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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065292 ID=TCONS_00065292|Name=TCONS_00065292|organism=Clytia hemisphaerica|type=transcript|length=3270bpRun BLAST on NCBI protein sequence of TCONS_00065292-protein >TCONS_00065292-protein ID=TCONS_00065292-protein|Name=TCONS_00065292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp SEMITGVDLVELQLRAAAGERLPFTQEDLEIKGHSFEARIYAEDPDSDFLRun BLAST on NCBI transcript from alignment at scaffold_435:299149..306703- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065292 ID=TCONS_00065292|Name=TCONS_00065292|organism=Clytia hemisphaerica|type=transcript|length=7555bp|location=Sequence derived from alignment at scaffold_435:299149..306703- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_435:299149..306703- >TCONS_00065292 ID=TCONS_00065292|Name=TCONS_00065292|organism=Clytia hemisphaerica|type=CDS|length=12342bp|location=Sequence derived from alignment at scaffold_435:299149..306703- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065292 vs. Swiss-Prot (Human)
Match: MCCA (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3) HSP 1 Score: 315.849 bits (808), Expect = 6.004e-93 Identity = 160/373 (42.90%), Postives = 240/373 (64.34%), Query Frame = 1
Query: 1 SEMITGVDLVELQLRAAAGERLPFTQEDLEIKGHSFEARIYAEDPDSDFLPGTGKLHYLSTPLPSSDVRIETGVRQGDEVSQYYDPMIAKLVVWDEDRATALKKLYRKLSEYHVVGLSTNLKFLKDLASHPAFVTADVHTDFIQEHNDELFPKRGGLNGHQLAQAGFALILDEQ---NTLAQKSRLSDTHSPMNNFSSYRVNVNEHQSIQIKDGDQDLTLDVTYS-DGHVSIKVGDEEFVCSGNLETSENQTIANVTINGQRERYSFVTHDGGLHVFTKDTHFQVQKQRPKFVLETIEAALPQGGIIAPMTGTIMEVRAKVGEEVKAGDTVAVIYAMKLEHNIVAPHDGVVEEVFVDASQMVNQNDEVLKIKE 1107
+EMITG DLVE QLR AAGE++P +QE++ ++GH+FEARIYAEDP ++F+P G L +LSTP RIETGVRQGDEVS +YDPMIAKLVVW DR AL KL L +Y++VGL TN+ FL +L+ HP F +VHTDFI +H+ +L R L QA LIL E+ +T ++ D SP ++ S R+N++ +++ +KDG ++ + VTY+ DG S+++ D+ F GNL + + T ++NG + + + +++F+K+ ++ PK+ L ++ + QGG +APMTGTI +V K G++VKAGD++ V+ AMK+EH I +P DG V++VF N++ +++ +E
Sbjct: 347 TEMITGTDLVEWQLRIAAGEKIPLSQEEITLQGHAFEARIYAEDPSNNFMPVAGPLVHLSTPRADPSTRIETGVRQGDEVSVHYDPMIAKLVVWAADRQAALTKLRYSLRQYNIVGLHTNIDFLLNLSGHPEFEAGNVHTDFIPQHHKQLLLSRKAAAKESLCQAALGLILKEKAMTDTFTLQAH--DQFSPFSSSSGRRLNISYTRNMTLKDGKNNVAIAVTYNHDGSYSMQIEDKTFQVLGNLYSEGDCTYLKCSVNGVASKAKLIILENTIYLFSKEGSIEIDIPVPKY-LSSVSSQETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEE 716 The following BLAST results are available for this feature:
BLAST of TCONS_00065292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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