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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066003 ID=TCONS_00066003|Name=TCONS_00066003|organism=Clytia hemisphaerica|type=transcript|length=3219bpRun BLAST on NCBI protein sequence of TCONS_00066003-protein >TCONS_00066003-protein ID=TCONS_00066003-protein|Name=TCONS_00066003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=722bp MCLLSITHLSSFTSLPESLYKEFLNLNPNRLVNCLSEMQQKYEIDSFLQLRun BLAST on NCBI transcript from alignment at scaffold_448:696447..704290- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066003 ID=TCONS_00066003|Name=TCONS_00066003|organism=Clytia hemisphaerica|type=transcript|length=7844bp|location=Sequence derived from alignment at scaffold_448:696447..704290- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_448:696447..704290- >TCONS_00066003 ID=TCONS_00066003|Name=TCONS_00066003|organism=Clytia hemisphaerica|type=CDS|length=19521bp|location=Sequence derived from alignment at scaffold_448:696447..704290- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066003 vs. Swiss-Prot (Human)
Match: HEAT1 (HEAT repeat-containing protein 1 OS=Homo sapiens GN=HEATR1 PE=1 SV=3) HSP 1 Score: 199.904 bits (507), Expect = 9.117e-52 Identity = 108/306 (35.29%), Postives = 188/306 (61.44%), Query Frame = 2
Query: 14 MTSLATQLKQLQIPGLQQTVGKVSHV-SILFDKEVAATLDMESIYNIGTSGFQQIVSVDPIFQDYEDILFSQKSLHLQRTMESKDINNRIHKAVDEFLVFLSPYLQLQAAKKCLEWLIWRFQIHNFERDSLIRCILPYHETQIFSRIIQLVHMTNYGTIWEHLLPKLKQGGTINTTTLLKHCRSNLNLLSFIFDMAQQASHLLKKEPKSG--LQVVFSFYSRTIC-GVISEEKLNIEVIERVMSMVEVGMNSNSSDFICSTYMVITMFVSNNRQLKSKAKASLMIRILKSMG--IANYEYGLMCLL 913
MTSLA QL++L +P ++ V S+LFD + AAT+D ++ + IG +G ++++ +DP F+ +E LFSQ + L+R++++K +N ++ + + FL+ LSPY L+ A+KCLEWLI RF IH + +DSLI C+LPYHET+IF R+IQL+ + N W LLP + G + TL+ HC +L + FI + ++ + + P S L+V+ +FY+ TI +++ E ++ +I ++ ++ G+ S+ D+ +TYM+I +S +++ SL +I+K++ + + GL CL+
Sbjct: 1 MTSLAQQLQRLALPQSDASLLSRDEVASLLFDPKEAATIDRDTAFAIGCTGLEELLGIDPSFEQFEAPLFSQLAKTLERSVQTKAVNKQLDENISLFLIHLSPYFLLKPAQKCLEWLIHRFHIHLYNQDSLIACVLPYHETRIFVRVIQLLKINNSKHRWFWLLPVKQSGVPLAKGTLITHCYKDLGFMDFICSLVTKSVKVFAEYPGSSAQLRVLLAFYASTIVSALVAAEDVSDNIIAKLFPYIQKGLKSSLPDYRAATYMIICQ-ISVKVTMENTFVNSLASQIIKTLTKIPSLIKDGLSCLI 305 The following BLAST results are available for this feature:
BLAST of TCONS_00066003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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