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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066517 ID=TCONS_00066517|Name=TCONS_00066517|organism=Clytia hemisphaerica|type=transcript|length=2580bp
ATGAAAGCACAACAGCGTTGCTTAGCTCTGGAgtggtttatttttgtttt
ttgaataaactTTTACTTGATTTCTAATCTGGCTTTAtgttctttttata
tatttttagacGTACTATAAAACACAAGAGAGAGTACTATAGATTGGAAA
CATTATAAATCGTCGGTTTAATGAACTTACTCAACATGGCTGACGTCTTG
GAGAATAATGTGTTTTCAACGCGTAAAAGATCACATACAGAAAGTACaga
gacaaatgaaaatgacagACCGCGATCAAAGAGACAGAGTCCAACAAGCT
CGACTgAAGCGCTACCATTACTGAAGATTTTGATCCCGAATTACGCTGCG
GGCGCCATCATTGGAAAAGGAGGCACAAACATAGGTGATTTACAGTCTCA
ATATGGTGCCAAAATCAGGTTGTCGCCGAGCAGAGAGTTTTATCCCGGCA
CTGAGGAAAGAATTGTCGTTTTAACTGGCGAAGTCAATCAAATTATCGAC
CTGAATAACTACATTATTGATAAAGTGCACATTGACGCGACCGAGGGGCC
TGGGGCTAAATTACGGGATGAAGAACGCggacaaaaagtcaaaatagtcG
TTCCGAATGCCACAGCTGGACTTGTGATCGGCCGAGGTGGGTCCACCATC
AAGGCCCTGCAGGAAGAAACGGGAGCTAAAATAATGATTTCCGGACGTGA
CGAAGCTAAAGTACCGGGCGAACGGATTATCACGATAAGTGGAAATACGG
ATCAACGGATCGAGGCTGCGCAGAAAGTTGTTGCCAAGGTAGCAGCCGAC
GCTGAAAATATGGCAAATAAGAATTTGACGTATTCTTCGACGCAAGTACG
TAACGGATACGGTAATAAACATTTGGAAATGGGTCCAGTCACCCTTGGTG
GTGTCTCATCACTTCAATCAGTTATCGGAAGTTTGCAAAGTCAACATTCG
ATGAAAACAAGTCAAAATATCTTATCGTCAATTGCTCAAAATCCTATTTC
TGCATTGCAACAAAGCGGACTTGCCAACCAATTAGGTTTAAGTAGCACCA
TGTCAGGACTAACAGCTGGGATACCAGGCACTACATCTCTAGCTGCTTTA
ACAGGTGCCACCACTATGGGTAGCCTAGTAGCAAGTATTAAAACTCAAGT
CACAATACAAATGGAAATCCCTGACATCCTAGTCGGTGCTATACTCGGCA
AGCAAGGAAAAACTGTACACGAATTTATCCAGTTCAGTGGTGCTAAAATC
CAGTTTTCAGCCAAGAACGATTTTGCACCGGGAACTACAGATCGTATTTT
GACCATTCAAGGCGATGTAAATCAAACTCAGATTGCATACTTTCTTATAA
ATCAGAAGATAGTTCAAGCGGAGAGTGAGCTCGCTTCAGGAATACAAAGG
CATTGATTTCTCTTGTCTTTAGTTCCCTTACCCCTCTCGTTGTTATTCTT
GTATATTCCTTTTTTTGAGACAAACTATCCATCATACCTGTCATGTCGCT
CGCTACCTTTCATTTTCTCCACTGTTTCTTCTTCATATTTTGTTCACTCG
TTTACGTCATCGTTGTTGCCGTCACGTGACTTGAACGTCATcaatcaaca
aaacaaaactatcaaaaaaactatatttcataaaaacgattttttttatt
atatttcttCATATCGTGTCATGATGCTAGTCAAATATACACCCTCGAAG
TTAAAGAATTGAACTCCAAAAACTATACATCTTGCAATTTCCTTTTCCTC
ATGAGGTCTCGCGTCGACATATCTTCatgtaaataaaattatttgacTAG
CATCATGCCTGTTTCATTATAGtaacattttttattcataaaaaaccttt
atttgttcatatttttacgcatttttagaatttgtgtTCATGCAGTACAC
gctaaactgaaaaaaaaaattcagctttcaaaaagcatttcaCATTAAAA
TGCTCCCATCCTCCTACCATCTTACCTACCTCTATCACACAAATCCAATG
AACCATCACCACGACATCACGTGACCTGTAAATGCACCGTCATTTTGCAC
TACGTAACCATTACGTAACCAAATCAAACATTGCATGAATGTTATATTTT
GTTGCATGCGTGAAAGCACATTCTATTATAACAAAAAACATTACATTATT
GTGTTTTTCTCCATATTTTCATTAGTATATTAACAGTTCATTTCATATAT
CATTTAAAAGagaaccattcaaaaagtacgtctCCGAACAAACTATTCAA
ATGGCATGTTCAGTGCCCAGGGCCCTTCAGCCCCAAGTCATTTATTTAAA
GGCAGGCACGACCCACCGATTGCGGCagattttttctaaacattCTCAAA
CTCCCTTCGTCGTCGGTAAAATTGCCGTCATTAATGGAGTCGGATtcaaa
aagcttccgtcgtgtcTAAGAAGTGGACCCCACCCAACTTAAAAGGGGTA
TACTTCTTTTTGAATGGTTTCCAAATATCGTGTTTTTCATCGAAgtcatt
ttttttcgatttcttcATTATTATaatcaacatttttttctcaaacgaca
aaaatattattaaccAATCATATTCGTGAC Run BLAST on NCBI protein sequence of TCONS_00066517-protein >TCONS_00066517-protein ID=TCONS_00066517-protein|Name=TCONS_00066517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
MNLLNMADVLENNVFSTRKRSHTESTETNENDRPRSKRQSPTSSTEALPL
LKILIPNYAAGAIIGKGGTNIGDLQSQYGAKIRLSPSREFYPGTEERIVV
LTGEVNQIIDLNNYIIDKVHIDATEGPGAKLRDEERGQKVKIVVPNATAG
LVIGRGGSTIKALQEETGAKIMISGRDEAKVPGERIITISGNTDQRIEAA
QKVVAKVAADAENMANKNLTYSSTQVRNGYGNKHLEMGPVTLGGVSSLQS
VIGSLQSQHSMKTSQNILSSIAQNPISALQQSGLANQLGLSSTMSGLTAG
IPGTTSLAALTGATTMGSLVASIKTQVTIQMEIPDILVGAILGKQGKTVH
EFIQFSGAKIQFSAKNDFAPGTTDRILTIQGDVNQTQIAYFLINQKIVQA
ESELASGIQRH Run BLAST on NCBI transcript from alignment at scaffold_456:601474..605256+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066517 ID=TCONS_00066517|Name=TCONS_00066517|organism=Clytia hemisphaerica|type=transcript|length=3783bp|location=Sequence derived from alignment at scaffold_456:601474..605256+ (Clytia hemisphaerica)
ATGAAAGCACAACAGCGTTGCTTAGCTCTGGAgtggtttatttttgtttt
ttgaataaactTTTACTTGATTTCTAATCTGGCTTTAtgttctttttata
tatttttagacGTACTATAAAACACAAGAGAGAGTACTATAGATTGGAAA
CATTATAAATCGTCGGTTTAATGAACTTACTCAACATGGCTGACGTCTTG
GAGAATAATGTGTTTTCAACGCGTAAAAGATCACATACAGAAAGTACaga
gacaaatgaaaatgacagACCGCGATCAAAGAGACAGAGTCCAACAAGCT
CGACTggtatttatattttattcttCTTTAACTTGGGAAAACTATTTGGA
AACTATAGTTTGGTCTATTTGTAGCTGCCACTGCATATGTCAGCTATTTT
TTCCTAGTCGATTCCTCCTACAAGCTTCTATTGTTTCTTGTTCACGTTCA
AGATTTGGCAAGGTTTTTAGTTTGAACTAAATTCATCTAAGAAGCATGAA
TATGAACGAGTAAAACAATCTTGACCTCAGATAAGGTCAGGAAATATAGT
CACAGTTCAAGGTCTGTGTCTACATAAAAGTCAGCAAGATGATCTTATAA
CTGATTACAGAAGTTATGAATGCTGCGTTAATTGAATTATCTGGATAATG
GGTACCTAATCCAATAAAATTATGTCTTTGATTCCGTATTAAAACCTATT
AGAATTGTCATGTTGACCATCAAAGTATAAAATCAAACTTTAAATTGATA
GATTTAAActtaattttctcaaattttgctcAACTTTTCCGAATTACTTG
AAATCATCGATATGCTAACAATAACAAGGGaaggaaaatattcttatttc
tcACTGAATTACGAATTCTAGGTGCGGCCTGTAGGGCAGCTTTTATCTTT
GAATAGCAGATTGAACAATAAGCTAAATTCTTTGGCAGTAAGAGGTTTTC
TGATCAATGTTTTGAAGCTTAAAGAGAATTATTGCTCTCNTTTGAGAGTA
AGAGGTTTTCTGATCAATGTTTTGAAGCTTTAAGAgaattattgctcttt
ttttttcattttggttaGAAAATAGTGTCTTTCTCTCAATCAAAtcattc
aaaaattgaataaaatcacaaaatcgTGCAATTATATTTTACATCATGCA
ATTTTATGTGGACAGGTTTTTATGCACGGCATAAATTAAAGGATAATTTA
CAGGTCATTCTATGTAGGCTCATCTACCTAGATGGAATGATCATCAATGA
ACCTTATAAAACGATATTAACTTCCGTCACTCATTCTAATTTATTTGCAT
TAGTTGTCTTGATTTGTCACTTTCTATTAAATCCTAGTCAAAATTGGTCG
CTGCTAAGTTGAAACCTTGTCGTAACAGGATATTAGGCCTTCCACAATAT
TTATCTTAACTGTTTCAATAACTTTTTCATCCCAATAACTTGTTTTTCCT
ACTTAACTTCAATTCCTTCAATAAATAAAcatcattcttttgttttcttt
cctttacAGAAGCGCTACCATTACTGAAGATTTTGATCCCGAATTACGCT
GCGGGCGCCATCATTGGAAAAGGAGGCACAAACATAGGTGATTTACAGTC
TCAATATGGTGCCAAAATCAGGTTGTCGCCGAGCAGAGAGTTTTATCCCG
GCACTGAGGAAAGAATTGTCGTTTTAACTGGCGAAGTCAATCAAATTATC
GACCTGAATAACTACATTATTGATAAAGTGCACATTGACGCGACCGAGGG
GCCTGGGGCTAAATTACGGGATGAAGAACGCggacaaaaagtcaaaatag
tcGTTCCGAATGCCACAGCTGGACTTGTGATCGGCCGAGGTGGGTCCACC
ATCAAGGCCCTGCAGGAAGAAACGGGAGCTAAAATAATGATTTCCGGACG
TGACGAAGCTAAAGTACCGGGCGAACGGATTATCACGATAAGTGGAAATA
CGGATCAACGGATCGAGGCTGCGCAGAAAGTTGTTGCCAAGGTAGCAGCC
GACGCTGAAAATATGGCAAATAAGAATTTGACGTATTCTTCGACGCAAGT
ACGTAACGGATACGGTAATAAACATTTGGAAATGGGTCCAGTCACCCTTG
GTGGTGTCTCATCACTTCAATCAGTTATCGGAAGTTTGCAAAGTCAACAT
TCGATGAAAACAAGTCAAAATATCTTATCGTCAATTGCTCAAAATCCTAT
TTCTGCATTGCAACAAAGCGGACTTGCCAACCAATTAGGTTTAAGTAGCA
CCATGTCAGGACTAACAGCTGGGATACCAGGCACTACATCTCTAGCTGCT
TTAACAGGTGCCACCACTATGGGTAGCCTAGTAGCAAGTATTAAAACTCA
AGTCACAATACAAATGGAAATCCCTGACATCCTAGTCGGTGCTATACTCG
GCAAGCAAGGAAAAACTGTACACGAATTTATCCAGTTCAGTGGTGCTAAA
ATCCAGTTTTCAGCCAAGAACGATTTTGCACCGGGAACTACAGATCGTAT
TTTGACCATTCAAGGCGATGTAAATCAAACTCAGATTGCATACTTTCTTA
TAAATCAGAAGATAGTTCAAGCGGAGAGTGAGCTCGCTTCAGGAATACAA
AGGCATTGATTTCTCTTGTCTTTAGTTCCCTTACCCCTCTCGTTGTTATT
CTTGTATATTCCTTTTTTTGAGACAAACTATCCATCATACCTGTCATGTC
GCTCGCTACCTTTCATTTTCTCCACTGTTTCTTCTTCATATTTTGTTCAC
TCGTTTACGTCATCGTTGTTGCCGTCACGTGACTTGAACGTCATcaatca
acaaaacaaaactatcaaaaaaactatatttcataaaaacgatttttttt
attatatttcttCATATCGTGTCATGATGCTAGTCAAATATACACCCTCG
AAGTTAAAGAATTGAACTCCAAAAACTATACATCTTGCAATTTCCTTTTC
CTCATGAGGTCTCGCGTCGACATATCTTCatgtaaataaaattatttgac
TAGCATCATGCCTGTTTCATTATAGtaacattttttattcataaaaaacc
tttatttgttcatatttttacgcatttttagaatttgtgtTCATGCAGTA
CACgctaaactgaaaaaaaaaattcagctttcaaaaagcatttcaCATTA
AAATGCTCCCATCCTCCTACCATCTTACCTACCTCTATCACACAAATCCA
ATGAACCATCACCACGACATCACGTGACCTGTAAATGCACCGTCATTTTG
CACTACGTAACCATTACGTAACCAAATCAAACATTGCATGAATGTTATAT
TTTGTTGCATGCGTGAAAGCACATTCTATTATAACAAAAAACATTACATT
ATTGTGTTTTTCTCCATATTTTCATTAGTATATTAACAGTTCATTTCATA
TATCATTTAAAAGagaaccattcaaaaagtacgtctCCGAACAAACTATT
CAAATGGCATGTTCAGTGCCCAGGGCCCTTCAGCCCCAAGTCATTTATTT
AAAGGCAGGCACGACCCACCGATTGCGGCagattttttctaaacattCTC
AAACTCCCTTCGTCGTCGGTAAAATTGCCGTCATTAATGGAGTCGGATtc
aaaaagcttccgtcgtgtcTAAGAAGTGGACCCCACCCAACTTAAAAGGG
GTATACTTCTTTTTGAATGGTTTCCAAATATCGTGTTTTTCATCGAAgtc
attttttttcgatttcttcATTATTATaatcaacatttttttctcaaacg
acaaaaatattattaaccAATCATATTCGTGAC Coding sequence (CDS) from alignment at scaffold_456:601474..605256+ >TCONS_00066517 ID=TCONS_00066517|Name=TCONS_00066517|organism=Clytia hemisphaerica|type=CDS|length=2472bp|location=Sequence derived from alignment at scaffold_456:601474..605256+ (Clytia hemisphaerica)
ATGAACTTACTCAACATGGCTGACGTCTTGGAGAATAATGTGTTTTCAAC
GCGTAAAAGATCACATACAGAAAGTACagagacaaatgaaaatgacagAC
CGCGATCAAAGAGACAGAGTCCAACAAGCTCGACTgAAGCGCTACCATTA
CTGAAGATTTTGATCCCGAATTACGCTGCGGGCGCCATCATTGGAAAAGG
AGGCACAAACATAGGTGATTTACAGTCTCAATATGGTGCCAAAATCAGGT
TGTCGCCGAGCAGAGAGTTTTATCCCGGCACTGAGGAAAGAATTGTCGTT
TTAACTGGCGAAGTCAATCAAATTATCGACCTGAATAACTACATTATTGA
TAAAGTGCACATTGACGCGACCGAGGGGCCTGGGGCTAAATTACGGGATG
AAGAACGCggacaaaaagtcaaaatagtcGTTCCGAATGCCACAGCTGGA
CTTGTGATCGGCCGAGGTGGGTCCACCATCAAGGCCCTGCAGGAAGAAAC
GGGAGCTAAAATAATGATTTCCGGACGTGACGAAGCTAAAGTACCGGGCG
AACGGATTATCACGATAAGTGGAAATACGGATCAACGGATCGAGGCTGCG
CAGAAAGTTGTTGCCAAGGTAGCAGCCGACGCTGAAAATATGGCAAATAA
GAATTTGACGTATTCTTCGACGCAAGTACGTAACGGATACGGTAATAAAC
ATTTGGAAATGGGTCCAGTCACCCTTGGTGGTGTCTCATCACTTCAATCA
GTTATCGGAAGTTTGCAAAGTCAACATTCGATGAAAACAAGTCAAAATAT
CTTATCGTCAATTGCTCAAAATCCTATTTCTGCATTGCAACAAAGCGGAC
TTGCCAACCAATTAGGTTTAAGTAGCACCATGTCAGGACTAACAGCTGGG
ATACCAGGCACTACATCTCTAGCTGCTTTAACAGGTGCCACCACTATGGG
TAGCCTAGTAGCAAGTATTAAAACTCAAGTCACAATACAAATGGAAATCC
CTGACATCCTAGTCGGTGCTATACTCGGCAAGCAAGGAAAAACTGTACAC
GAATTTATCCAGTTCAGTGGTGCTAAAATCCAGTTTTCAGCCAAGAACGA
TTTTGCACCGGGAACTACAGATCGTATTTTGACCATTCAAGGCGATGTAA
ATCAAACTCAGATTGCATACTTTCTTATAAATCAGAAGATAGTTCAAGCG
GAGAGTGAGCTCGCTTCAGGAATACAAAGGCATTGAATGAACTTACTCAA
CATGGCTGACGTCTTGGAGAATAATGTGTTTTCAACGCGTAAAAGATCAC
ATACAGAAAGTACagagacaaatgaaaatgacagACCGCGATCAAAGAGA
CAGAGTCCAACAAGCTCGACTgAAGCGCTACCATTACTGAAGATTTTGAT
CCCGAATTACGCTGCGGGCGCCATCATTGGAAAAGGAGGCACAAACATAG
GTGATTTACAGTCTCAATATGGTGCCAAAATCAGGTTGTCGCCGAGCAGA
GAGTTTTATCCCGGCACTGAGGAAAGAATTGTCGTTTTAACTGGCGAAGT
CAATCAAATTATCGACCTGAATAACTACATTATTGATAAAGTGCACATTG
ACGCGACCGAGGGGCCTGGGGCTAAATTACGGGATGAAGAACGCggacaa
aaagtcaaaatagtcGTTCCGAATGCCACAGCTGGACTTGTGATCGGCCG
AGGTGGGTCCACCATCAAGGCCCTGCAGGAAGAAACGGGAGCTAAAATAA
TGATTTCCGGACGTGACGAAGCTAAAGTACCGGGCGAACGGATTATCACG
ATAAGTGGAAATACGGATCAACGGATCGAGGCTGCGCAGAAAGTTGTTGC
CAAGGTAGCAGCCGACGCTGAAAATATGGCAAATAAGAATTTGACGTATT
CTTCGACGCAAGTACGTAACGGATACGGTAATAAACATTTGGAAATGGGT
CCAGTCACCCTTGGTGGTGTCTCATCACTTCAATCAGTTATCGGAAGTTT
GCAAAGTCAACATTCGATGAAAACAAGTCAAAATATCTTATCGTCAATTG
CTCAAAATCCTATTTCTGCATTGCAACAAAGCGGACTTGCCAACCAATTA
GGTTTAAGTAGCACCATGTCAGGACTAACAGCTGGGATACCAGGCACTAC
ATCTCTAGCTGCTTTAACAGGTGCCACCACTATGGGTAGCCTAGTAGCAA
GTATTAAAACTCAAGTCACAATACAAATGGAAATCCCTGACATCCTAGTC
GGTGCTATACTCGGCAAGCAAGGAAAAACTGTACACGAATTTATCCAGTT
CAGTGGTGCTAAAATCCAGTTTTCAGCCAAGAACGATTTTGCACCGGGAA
CTACAGATCGTATTTTGACCATTCAAGGCGATGTAAATCAAACTCAGATT
GCATACTTTCTTATAAATCAGAAGATAGTTCAAGCGGAGAGTGAGCTCGC
TTCAGGAATACAAAGGCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066517-exon-scaffold_456-1491911889:601474..601779 | TCONS_00066517-exon-scaffold_456-1491911889:601474..601779 | Clytia hemisphaerica | exon |
| TCONS_00066517-exon-scaffold_456-1510915933:601474..601779 | TCONS_00066517-exon-scaffold_456-1510915933:601474..601779 | Clytia hemisphaerica | exon |
| TCONS_00066517-exon-scaffold_456-1575043694:601474..601779 | TCONS_00066517-exon-scaffold_456-1575043694:601474..601779 | Clytia hemisphaerica | exon |
| TCONS_00066517-exon-scaffold_456-1491911889:602983..605256 | TCONS_00066517-exon-scaffold_456-1491911889:602983..605256 | Clytia hemisphaerica | exon |
| TCONS_00066517-exon-scaffold_456-1510915933:602983..605256 | TCONS_00066517-exon-scaffold_456-1510915933:602983..605256 | Clytia hemisphaerica | exon |
| TCONS_00066517-exon-scaffold_456-1575043694:602983..605256 | TCONS_00066517-exon-scaffold_456-1575043694:602983..605256 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:601474..605256 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0003723 | RNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0003723 |
RNA binding |
Blast
BLAST of TCONS_00066517 vs. Swiss-Prot (Human)
Match: NOVA2 (RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 6.383e-31 Identity = 66/159 (41.51%), Postives = 103/159 (64.78%), Query Frame = 3
Query: 318 LLKILIPNYAAGAIIGKGGTNIGDLQSQYGAKIRLSPSREFYPGTEERIVVLTGEVNQIIDLNNYIIDKVHIDATEGPGAKLRDE-------------ERGQKVKIVVPNATAGLVIGRGGSTIKALQEETGAKIMISGRDEAKVPGERIITISGNTDQ 755
LK+LIP+YAAG+IIGKGG I LQ + GA I+LS S++FYPGT ER+ ++ G + ++++I +KV E P A + E +R ++ K++VPN+TAGL+IG+GG+T+KA+ E++GA + +S + E ER++T+SG +Q
Sbjct: 34 FLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVR----EIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQ 188
The following BLAST results are available for this feature:
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