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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066518 ID=TCONS_00066518|Name=TCONS_00066518|organism=Clytia hemisphaerica|type=transcript|length=1938bp
CAAAAATCTTTATAATTTTTCCTTAGATTTTTTAGTTTACAGcttgattt
ttgataattttttttcttgttgatGCATAggcaaatattttttcttactc
ttttaggtaaaaaatgtttatttacaTCTTACTAGCAATCCCAAGTCTGT
TCTTACTATGGGTGTTAATCACTTATGTGGAACATTTAATCAATTCGAGG
AAATATCCAAAAGGACCATTCCCGCTTCCTCTGattggaaatttgaattt
gctgagCAAAGATTTACACTTGAATTTCTTGGAGATTGGAAAAACGTATG
GTGACGTGTTCAGTATTAGCATAGGTATGAAAAGATACGTCATCGTTAAT
TCTTACGAGAACGTCAAAGAGGGTCTTATCACCAAAGGGCACGAGATGGC
TGGACGCTCGCCAAGACTTAGTCTACTGGTAGCAACTAAAGGACGAAGAA
CATTCGGTGCTATGGATTATTCCAAGTCATGGGCTTTCATCAGAAAATTA
GCGTACAAAAGTTTACATTTATATGGAAGCGGCATGACGAATATTGAAGA
TATTGTGACCGATGACGTAGATAAATTGTGTTCGATTATCTCTGACGAAC
TTGACAAACCTGTTCCTATACAACCATATTTAGGCAACACATTGGTCAAT
ACAATCTGTCGAAGATGTTTTTCCACAAACTATGAGATCGATGATCCTGA
ATTTCAACATATTCTTGAATTCACCGCAAATATTGGCAAAGGAGTTGGTC
TGGATATGTGGTTGGCCATGTTACCTTGGCTTGTTTATCTCCCAACTTTC
ACCTCGACTGCACAATTCAAAATGCTGGTCACAGCAGTGAATCAAAGAAG
CGTTATGACTCATCGAATGTTCGAGGAACACAAGACAACCTTGAATCCAG
ACAACCTTCGAGATGTAACTGATCAACTTCTCTTTCTATCCTCAAACAAA
GAAGCATGGAAAGATGCCGGCTTCGAAGAAGTTTCTCAAGACCATCTCGA
AAATACagtcaatattttgttttttgccGGCATTGAAACTTCTCTTACAA
CACTTCGTTGGTTTTTCCTGTATTGCCTACACCACCCAGAATACCAAAAG
AAAATGCATGACGAAATTGTGGAGACATTTGGTTTGAGACACCGTCTAAC
TTATTCAGATCTGGACTCTTTGCCGTTCACCCAAGCAATGCTGTTTGAAA
CCAATCGAAAATCTTCAATTGCTAGAATCAATGTTGCACATAAAGCCATG
GTGGATACATCAATCAATGGAATCAACATTCCAAAAGGAGCTCCAATACT
GTTTAACCTATACAGTCTTCACTATGACGAGAATCATTGGGAAAAACCGC
ACGAGTTCAACCCCCACCGCTGGTTAAATGCTGATGGAAGTCTAAAGAAG
GAAAGAGCAACACACTATCTGCCTTTCTCAGCTGGAACTCGAGTCTGCCT
TGGTGAGAAAATGGCTAAAGTTCAAATGTTTTTGATCACGACGAAATTGA
TTCGGTCTTACGAGATATGTCCATATCTTGAAGAGAAGCTACCAGGGTTG
GACGAACGAGGACCAGGAGGACCGTATTCACCCGCTACAGACTATAAAGT
GATCTTCAAGAGACGAATACAATCATAAAACAAACCATAGCGAGCCAACG
AACTCTGTTTTATAAGTTGAACTTCACAATAAAGCTCGAATCTCAAGGAT
TCAGTAAAACTTTTGCTGCTAATTTATCAGacttgtaaaaaaatgttttc
atattTAGAGCAGTAGAAGCTCCAAAGATCCAACCTCATTTACTTAACAT
CCTTATGATTTTGGTGGcactgtaaatatttcttctttttttaaggCAAA
ATTATGTTAGGCTTTATATCCGCTTTCACTACTTTGACTCTTAAACTACT
TGAAATTCCAAAATCAACACTGTACTTAGCTTAATCTT Run BLAST on NCBI transcript from alignment at scaffold_456:685746..688659+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066518 ID=TCONS_00066518|Name=TCONS_00066518|organism=Clytia hemisphaerica|type=transcript|length=2914bp|location=Sequence derived from alignment at scaffold_456:685746..688659+ (Clytia hemisphaerica)
CAAAAATCTTTATAATTTTTCCTTAGATTTTTTAGTTTACAGcttgattt
ttgataattttttttcttgttgatGCATAggcaaatattttttcttactc
ttttaggtaaaaaatgtttatttacaTCTTACTAGCAATCCCAAGTCTGT
TCTTACTATGGGTGTTAATCACTTATGTGGAACATTTAATCAATTCGAGG
AAATATCCAAAAGGACCATTCCCGCTTCCTCTGattggaaatttgaattt
gctgagCAAAGATTTACACTTGAATTTCTTGGAGATTGGAAAAACGTATG
GTGACGTGTTCAGTATTAGCATAGGTAAGAGCATTTTTCGGTGACAAATA
ATTTGCCCGTGGATAAATGCCCCCGGGAAATTGAAGCAGTAAAGGCCCCC
GGGAAGCCCCCTTGTAAATATGACCGACATTGAGattaaaaatattgcaa
atttccggggatatttttcaaaatgaggGGCCCTTCCATTTCTAGAGTTT
ATTGTTATGAAAGtataaaaagaataaaagaacaGCACAAGGGAAAATAT
AAACCACCTTGTATCTCCACGGAATGAATCTCACAGTCTCTTTGTTTTCG
AGTTGTTCATTTCTTGAGCCATTTCACGCGCCACATAACTTATGAAAGAC
TACTCAAGAATTTCCAAGTTCCAGGAGGAGATAAAGAGCTCAAACATGTT
AATTTCAAATCCAGTTACAGTTTATCCTTTCAAACACAGGTATGAAAAGA
TACGTCATCGTTAATTCTTACGAGAACGTCAAAGAGGGTCTTATCACCAA
AGGGCACGAGATGGCTGGACGCTCGCCAAGACTTAGTCTACTGGTAGCAA
CTAAAGGACGAAGAACATTCGGTGCTATGGATTATTCCAAGTCATGGGCT
TTCATCAGAAAATTAGCGTACAAAAGTTTACATTTATATGGAAGCGGCAT
GACGAATATTGAAGATATTGTGACCGATGACGTAGATAAATTGTGTTCGA
TTATCTCTGACGAACTTGACAAACCTGTTCCTATACAACCATATTTAGGT
AACGTCTTGAAAATTGTCTCTCGTTGAATTCTACCTTTAAGATTTAAGAA
ATTTCAGCTGATGAGCCTACCACGGTTTTATGAAAACAAAGTACATATGT
ACTACTAGACGGTTCCTGTCGTCGCAATCATCGGCTAAGTGTTGCTGAAC
GTACACAATGTTCCTGTactaacgcactttgtaataacgccacactttgt
aatacctaacacactttgtaataattAACCTACCTCACTTTGTAATAAAA
TTCACCAGACTTTGTAATACActccacactttgtaatacaccTTGCCAAA
CTTTGTAATACCTAACACACTTTGTAATAGAACTTGACATACTTTGTAAT
ACCTAACACACTTTGTGATAGAactgacacactttgtaatacgaAAAGCT
GACAAACTTTATAATAAAACCTGAAAGTCAAATTGTGCAACCTTGCGAGC
ATATCTACAGGGCCCTTTTGTATTGCTCGAAGAACAATCATTACATATCA
ATCATTATATAGGCAAAGGCTACTTTTCCTTCTAATACTTGATATTATTA
CCTTTTCAGGCAACACATTGGTCAATACAATCTGTCGAAGATGTTTTTCC
ACAAACTATGAGATCGATGATCCTGAATTTCAACATATTCTTGAATTCAC
CGCAAATATTGGCAAAGGAGTTGGTCTGGATATGTGGTTGGCCATGTTAC
CTTGGCTTGTTTATCTCCCAACTTTCACCTCGACTGCACAATTCAAAATG
CTGGTCACAGCAGTGAATCAAAGAAGCGTTATGACTCATCGAATGTTCGA
GGAACACAAGACAACCTTGAATCCAGACAACCTTCGAGATGTAACTGATC
AACTTCTCTTTCTATCCTCAAACAAAGAAGCATGGAAAGATGCCGGCTTC
GAAGAAGTTTCTCAAGACCATCTCGAAAATACagtcaatattttgttttt
tgccGGCATTGAAACTTCTCTTACAACACTTCGTTGGTTTTTCCTGTATT
GCCTACACCACCCAGAATACCAAAAGAAAATGCATGACGAAATTGTGGAG
ACATTTGGTTTGAGACACCGTCTAACTTATTCAGATCTGGACTCTTTGCC
GTTCACCCAAGCAATGCTGTTTGAAACCAATCGAAAATCTTCAATTGCTA
GAATCAATGTTGCACATAAAGCCATGGTGGATACATCAATCAATGGAATC
AACATTCCAAAAGGAGCTCCAATACTGTTTAACCTATACAGTCTTCACTA
TGACGAGAATCATTGGGAAAAACCGCACGAGTTCAACCCCCACCGCTGGT
TAAATGCTGATGGAAGTCTAAAGAAGGAAAGAGCAACACACTATCTGCCT
TTCTCAGCTGGAACTCGAGTCTGCCTTGGTGAGAAAATGGCTAAAGTTCA
AATGTTTTTGATCACGACGAAATTGATTCGGTCTTACGAGATATGTCCAT
ATCTTGAAGAGAAGCTACCAGGGTTGGACGAACGAGGACCAGGAGGACCG
TATTCACCCGCTACAGACTATAAAGTGATCTTCAAGAGACGAATACAATC
ATAAAACAAACCATAGCGAGCCAACGAACTCTGTTTTATAAGTTGAACTT
CACAATAAAGCTCGAATCTCAAGGATTCAGTAAAACTTTTGCTGCTAATT
TATCAGacttgtaaaaaaatgttttcatattTAGAGCAGTAGAAGCTCCA
AAGATCCAACCTCATTTACTTAACATCCTTATGATTTTGGTGGcactgta
aatatttcttctttttttaaggCAAAATTATGTTAGGCTTTATATCCGCT
TTCACTACTTTGACTCTTAAACTACTTGAAATTCCAAAATCAACACTGTA
CTTAGCTTAATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066518-exon-scaffold_456-1491911889:685746..686069 | TCONS_00066518-exon-scaffold_456-1491911889:685746..686069 | Clytia hemisphaerica | exon |
| TCONS_00066518-exon-scaffold_456-1510915933:685746..686069 | TCONS_00066518-exon-scaffold_456-1510915933:685746..686069 | Clytia hemisphaerica | exon |
| TCONS_00066518-exon-scaffold_456-1575043694:685746..686069 | TCONS_00066518-exon-scaffold_456-1575043694:685746..686069 | Clytia hemisphaerica | exon |
| TCONS_00066518-exon-scaffold_456-1491911889:686485..686793 | TCONS_00066518-exon-scaffold_456-1491911889:686485..686793 | Clytia hemisphaerica | exon |
| TCONS_00066518-exon-scaffold_456-1510915933:686485..686793 | TCONS_00066518-exon-scaffold_456-1510915933:686485..686793 | Clytia hemisphaerica | exon |
| TCONS_00066518-exon-scaffold_456-1575043694:686485..686793 | TCONS_00066518-exon-scaffold_456-1575043694:686485..686793 | Clytia hemisphaerica | exon |
| TCONS_00066518-exon-scaffold_456-1491911889:687355..688659 | TCONS_00066518-exon-scaffold_456-1491911889:687355..688659 | Clytia hemisphaerica | exon |
| TCONS_00066518-exon-scaffold_456-1510915933:687355..688659 | TCONS_00066518-exon-scaffold_456-1510915933:687355..688659 | Clytia hemisphaerica | exon |
| TCONS_00066518-exon-scaffold_456-1575043694:687355..688659 | TCONS_00066518-exon-scaffold_456-1575043694:687355..688659 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:685746..688659 + |
Blast
BLAST of TCONS_00066518 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 2.175e-76 Identity = 140/456 (30.70%), Postives = 243/456 (53.29%), Query Frame = 3
Query: 201 KYPKGPFPLPLIGNLNLLSKDLHL--NFLEIGKTYGDVFSISIGMKRYVIVNSYENVKEGLITKGHEMAGRSPRLSLLVATKGRRTFGAMDYSKSWAFIRKLAYKSLHLYGSGMTNIEDIVTDDVDKLCSIISDELDKPVPIQPYLGNTLVNTICRRCFSTNYEIDDPEFQHILEFTANIGKGVGLDMWLAMLPWLVYLPTFTSTAQFKMLVTAVNQRSVMTHRMFEEHKTTLNPDNLRDVTDQLL---FLSSNKEAWKDAGFEEVSQDHLENTVNILFFAGIETSLTTLRWFFLYCLHHPEYQKKMHDEIVETFGLRHRLTYSDLDSLPFTQAMLFETNRKSSIARINVAHKAMVDTSINGINIPKGAPILFNLYSLHYDENHWEKPHEFNPHRWLNADGSLKKERATHYLPFSAGTRVCLGEKMAKVQMFLITTKLIRSYEICPYLEEKLPGLD 1553
KYPK LPL+G+L L + H+ NF ++ K YG ++S+ +G K VIV ++ KE LI KG + +GR +L +A+ R+ D W R+LA + L+ G +E I+ ++ LC +++ + + I + + N I CF+T+Y+ DPE I + I + D + ++PWL P T + L + V R+ + +++ E +K D++ ++ D L+ S N A D E +S +H+ T+ +F AG+ET+ + ++W + LH+P+ +KK+++EI + G T SD + L +A + E R +A + + HKA VD+SI + KG ++ NL++LH++E W +P +F P R+LN G+ + YLPF AG R C+GE +A+ ++FLI L++ +++ + +LP L+
Sbjct: 26 KYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKT----LEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLE 477
The following BLAST results are available for this feature:
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