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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066578 ID=TCONS_00066578|Name=TCONS_00066578|organism=Clytia hemisphaerica|type=transcript|length=3663bpRun BLAST on NCBI protein sequence of TCONS_00066578-protein >TCONS_00066578-protein ID=TCONS_00066578-protein|Name=TCONS_00066578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=735bp MAGTGFDQSEVYFTDPFGTEDSGPDPNANVNEIKKHFRDFIREFHESNFVRun BLAST on NCBI transcript from alignment at scaffold_456:645974..673736- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066578 ID=TCONS_00066578|Name=TCONS_00066578|organism=Clytia hemisphaerica|type=transcript|length=27763bp|location=Sequence derived from alignment at scaffold_456:645974..673736- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_456:645974..673736- >TCONS_00066578 ID=TCONS_00066578|Name=TCONS_00066578|organism=Clytia hemisphaerica|type=CDS|length=35328bp|location=Sequence derived from alignment at scaffold_456:645974..673736- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066578 vs. Swiss-Prot (Human)
Match: MCM5 (DNA replication licensing factor MCM5 OS=Homo sapiens GN=MCM5 PE=1 SV=5) HSP 1 Score: 991.875 bits (2563), Expect = 0.000e+0 Identity = 496/727 (68.23%), Postives = 609/727 (83.77%), Query Frame = 2
Query: 947 TGFDQSEVYFTDPFGTEDSGPDPNANVNEIKKHFRDFIREFH----ESNFVFPYRDQLKRNYNLGQYYLEVSLDDLRSYDELLVDKLLKNPTXXXXXXXXXXXXXXXXVTKPRPLGDEEVQDIQVTLRSEANPVGLRDLKSENVSKLVKIPGIIISASTIRVKATKITIQCRGCKNTLPNIGLKPGLEGYAMPRSCPTDQTGKPAPCPLDPFFILPDKCKCVDFQVLKLQESPDAVPNGEMPRHLQLYCDRYLTENVVPGNRLTVTGIYSIKKTGPQKKKDNSGGGVGIRKPYIRVLGIHVETDGPGRS-SGSIHFTPQDEEEFRRLASRPDAFDVISRSIAPSIYGSEDIKKSIACLLFGGSRKRLPDGLTRRGDINVLLLGDPGTAKSQLLKFVEKVSPIGVYTSGKGSSAAGLTASVIRDPVSRNFIMEGGAMVLADGGVVCIDEFDKMRQDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGDQNIDFMPTILSRFDTIFIVKDEHDQQKDIRLAKHVMQVHLNAAQASSDGVEADLSLNFLKKYIDYCRRKCGPRLSQSAAEKLQNQYVLMRTGARTQEQQSNKRNSIPITVRQLEAIVRISESLAKMRLQPFALEADVDEALRLFQVXXXXXXXXXXXXXXEGFTPEEDIEEVRRLETLLKKRFAIGSQVSEQRIISDFQRQKFSEKAISTVIHIMLRRGELEHK 3112
+GFD ++++D FG + + A +++++ F++F+R++ + F F YRD+LKR+YNLG+Y++EV ++DL S+DE L D L K P EH+ + EEAAKE+ADEVT+PRP G+E +QDIQV L+S+A+P +R LKS+ +S LVKIPGIII+AS +R KAT+I+IQCR C+NTL NI ++PGLEGYA+PR C TDQ G+P CPLDP+FI+PDKCKCVDFQ LKLQE PDAVP+GEMPRH+QLYCDRYL + VVPGNR+T+ GIYSIKK G + GVGIR YIRVLGI V+TDG GRS +G++ +PQ+EEEFRRLA+ P+ ++VIS+SIAPSI+G D+KK+IACLLFGGSRKRLPDGLTRRGDIN+L+LGDPGTAKSQLLKFVEK SPIGVYTSGKGSSAAGLTASV+RDP SRNFIMEGGAMVLADGGVVCIDEFDKMR+DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWD+TKG+ NIDFMPTILSRFD IFIVKDEH++++D+ LAKHV+ +H++A + VE ++ L LKK+I YCR KCGPRLS AAEKL+N+Y++MR+GAR E+ S++R+SIPITVRQLEAIVRI+E+L+KM+LQPFA EADV+EALRLFQVSTLDAALSG LSG EGFT +ED E + R+E LK+RFAIGSQVSE II DF +QK+ E AI V+ +MLRRGE++H+
Sbjct: 2 SGFDDPGIFYSDSFGGDAQADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPSGEEVLQDIQVMLKSDASPSSIRSLKSDMMSHLVKIPGIIIAASAVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRP-KCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGLTTSRGRDRVGVGIRSSYIRVLGIQVDTDGSGRSFAGAV--SPQEEEEFRRLAALPNVYEVISKSIAPSIFGGTDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGLTASVMRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKGEDNIDFMPTILSRFDMIFIVKDEHNEERDVMLAKHVITLHVSAL-TQTQAVEGEIDLAKLKKFIAYCRVKCGPRLSAEAAEKLKNRYIIMRSGARQHERDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVSTLDAALSGTLSGVEGFTSQEDQEMLSRIEKQLKRRFAIGSQVSEHSIIKDFTKQKYPEHAIHKVLQLMLRRGEIQHR 724 The following BLAST results are available for this feature:
BLAST of TCONS_00066578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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