TCONS_00066588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066588
Unique NameTCONS_00066588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066588 ID=TCONS_00066588|Name=TCONS_00066588|organism=Clytia hemisphaerica|type=transcript|length=1139bp
TCAAGACATATTTCAGTACAATTTTAGCCGTTCAAGATTACTTCTCTTAG
TGATAAGTACGGTAAGCAATAATTTCTCTTTAGCAATGAAGATCTGTTTT
GCTGTGTTATTGATATTGGCTGTCTTGGCCATCGTTGAATCAAGGTGGCG
GAGACATAGACGTCATCACCATTCAAAACATCACCATTCAAAACATGGCT
CATCCAAACAGGTTTCTACAGGCAGTCAAGGAGGAAACCATGATATGAAT
AATTGGGATTTCTTCATGTTAGTGCAACAATGGCCTCTTTCATCATGCGA
GAAAGAAAATGTAACACATGAGCACACATGTGTCATCCCAAAGTATGTTG
ATGGCTGGACACTTCATGGTCTATGGCCTTCAACCAATGTCGAAAAGAAT
TACCCAACAGAGTGTACTAATGAAAAGTTTGATCCCGAGGAAGTCAGGGA
TCTGAAGCCTCGCATGTTGAAGTACTGGCCCAACATGTTTGTAGATTCGG
ACAAGAATCATTTTTGGGCACACGAATATGAAAAGCATGGCACATGCGCA
GAAAGTGTTCCAGGCTTTAAAACAGAGCACGAATTCTTTAATAGTGCATT
GAACTTACGTGACGAACATGATATTGGAAACATTCTTGCCAGTCAAGGAA
TCACACCACGAGATCAACCATACGAGggTTCTGATCTGAACGATGCATTG
AACAAAGGATTGGGGAAGACAGGATGTGTGCAATGTCAAAAAATTAACGA
AATTGGTTATGTCATTTCGGCTGCCGTAGTTTGTCTGAGTAAATCAAAAG
AAGTGATCGATTGTCCATATTGTGAACATAAATGTTTGGATGAAGAGAAA
GTTTACTATCAACCCATCCGGGGATAATATTTATAATTCtaatgaatttt
aatttttgctgctatacaccttttcgaccgcagccgccaattgccgccaA
TTCTGTccattttaccaccctaaaaccgtcccagtctttttttcgcgcct
aaagacaatataaaaaagtgtaaaaaaaggattagatcgagtttagggtg
gtcaattaaataataaagtggcacgcgcctgatcgcgcgactacggtcga
aaaggtataTTAACTAACCGTGGCATTGTTAGCTTTTTA
Run BLAST on NCBI

protein sequence of TCONS_00066588-protein

>TCONS_00066588-protein ID=TCONS_00066588-protein|Name=TCONS_00066588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
QDIFQYNFSRSRLLLLVISTVSNNFSLAMKICFAVLLILAVLAIVESRWR
RHRRHHHSKHHHSKHGSSKQVSTGSQGGNHDMNNWDFFMLVQQWPLSSCE
KENVTHEHTCVIPKYVDGWTLHGLWPSTNVEKNYPTECTNEKFDPEEVRD
LKPRMLKYWPNMFVDSDKNHFWAHEYEKHGTCAESVPGFKTEHEFFNSAL
NLRDEHDIGNILASQGITPRDQPYEGSDLNDALNKGLGKTGCVQCQKINE
IGYVISAAVVCLSKSKEVIDCPYCEHKCLDEEKVYYQPIRG
Run BLAST on NCBI

transcript from alignment at scaffold_456:765943..773193-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066588 ID=TCONS_00066588|Name=TCONS_00066588|organism=Clytia hemisphaerica|type=transcript|length=7251bp|location=Sequence derived from alignment at scaffold_456:765943..773193- (Clytia hemisphaerica)
TCAAGACATATTTCAGTACAATTTTAGCCGTTCAAGATTACTTCTCTTAG
TGATAAGTACGGTAAGGTAAGTACCATCTTTTAACTTACTAAGGCTTGCT
TCAGTAGAAATGAATTCTTCACCGTTTTACGAATCCTGTATTCGTGAATA
CTCCAAAAAGAAAATTTGCAACAGTTGTATACATTTTAGAAGCAGTTTTA
GCATTCGTCACACAGATGAACTTGTAACTCATTTTTCATCGAATAACAAA
TGATTATTTACTACACTCCTCACAGACCCACTGAAAAAAATTGTCAAAAT
ATCGTCCCCGGTGGCAAATTATCCTCCAATTTTCGTCCCCACTGAAAATA
ATCAAATAATCCTATCCTCACTGCAAAATATCATGCTATTGTTCCCATCC
CCACTGAATTATCTCTGACTTGAAAACAAAAGAATTGAAATCCCCAGCCA
TTAAAAATATTGGAATATCAATCCCCATCGAGTTTCACCAGTCTGTTATT
TTCATCCCCACTGGCTGAAAAAATCCTACCGGGTCTGTGAGAACGGGGTG
TTCATTTACTACACTTTACTTCCCACTGGAAAACCTTTTCAAAAAAGATT
TTCAGAGTTAGTATTGGTTTTGTATTTATGTATTAATTCTCTGTTTTTCA
GCAATAATTTCTCTTTAGCAATGAAGATCTGTTTTGCTGTGTTATTGATA
TTGGCTGTCTTGGCCATCGTTGAATCAAGGTGGCGGTAAGTGGTTCACTT
TTAAGCCTCAAAATGACCATGTCTTTACTTGTAGCAACTACTTTCTTGAA
TGTCGTTTAAAGTTAGTCTTTTCAAGGTTGAAGTTGCGTGAGAGCGTATA
CGACTAACAAGGGTATTAACAAAAGGTGTGACCAGTGTGATCAAACCAGA
TGGATGGTTTAACAATATGTAAAATCGGCATTTATAAATTCGATTGGGTC
AATAAACCTTGTCGGAGTTTTTGATTTTTCAAAAAGCGATGCATTGTGGG
ATTGTTTTGGGGGTATTACAATAGAAATCTCTTAGGAATTCCTCGAGGGA
ATTCTACTGTAATACTCCCGAAACAATCCCACAATGCATCGCTGTTTTAG
AAAAATAAAAAACTCCGATAAGGTCTATTGGCTTGATAGGACAGTTAAGA
TTCGAGATTTTCACTTATTTTCATCTCTACTAGGAGACATAGACGTCATC
ACCATTCAAAACATCACCATTCAAAACATGGCTCATCCAAACAGGTTTCT
ACAGGCAGTCAAGGAGGAAACCATGATATGAATAATTGGGATTTCTTCAT
GTTAGTGCAACAATGGCCTCTTTCATCATGCGAGAAAGAAAATGTAAGTT
ATTTTAGAACAAACCATTATAAAAATAAAAAGCTTTAATGACCAGAATTT
TAAGAATATTTTGCTTTGCGGACTTTAAAACACCGAGATTTGTTGGGAAA
ATGGACAAAATAAAACATTGTTAAGAACACCTTTAGCCTTAAAACTCAAA
AAGTTAAAAACATCCGAAGGCTTCAAAAATTAATGTGTTCTTATAAAAAA
ACGTGTATTTGCGTATTAAATCTATGTAGAGAGTACAGTATTAGCCATCA
AAAGTTATGCGTTAAAGAATCTTTCCTTTCCCGGCTAATAAAGAACCTTC
CTCTAAGATATCACAGGTTCTTGAGTTAGCTTTCTCACGAAACGTAATAG
TTATCGGACATTTGCGAGTACAATATGAGAAATATTTTACGAGTTCCGAG
ATTTTTCCGTACAATATTTTCCGAGCCTGTAGGCGAGGAAAATATACGGA
AAATCCGGAACGAGTAAAATATTTCCATATTGTACGAGCAAATGTCTGAT
AACTGGTCTATCGGTGACCCAAAAAATGCACTTTTTGTGTTGGAAAAAAG
CGCAGGGCACTTTCGTAGCAAAGTGACGTTAGATTGCTGCTACCGCTACA
ATGCAACAATATCTTTTCGTCAATTTATATTTTGTACATGTAAAATATAA
GATATATTGTACTCTTTTTAACCAATCAGATTGCAGATATTTTTTGGATC
GCCGATAAAGAATTTTAAGATTTAAAGAATTCAATAATAACATAGTCAAA
CTATTCAACATAAAATTGCACGATTCTACTCAAGTTCCACTCAAGATAGG
TGCCTGAAATATAACTCACTTCTTTCTAATCTAAATCGCAGATAATTACA
AAACTGCAGTATAAGGAGCATGAATCCGTTTTAGTAGATGCCTACAGCCT
AGCTGCTTTCTATACTTTTTCCCTACTTATACTACCTAAAATGATTCCTC
TCCACTTCTCCGTTTACCACATTCTAAATTACATTATTAGGTAACACATG
AGCACACATGTGTCATCCCAAAGTATGTTGATGGCTGGACACTTCATGGT
CTATGGCCTTCAACCAATGTCGAAAAGAATTACCCAACAGAGTGTACTAA
TGAAAAGTTTGATCCCGAGGAAGTCAGGGTATAATTCATTTCATATTTTG
ACTATATTGTTTTACTCTTTATGATTAGCAAAGTCGATTGAAACCCCCTC
ATAATACTGCTATTGTATATGTCACATATGTTATGCGACCGAGAAAGACT
TGGTAGCTTTAGGAGTACAGACTAATTTTGTTTTGTTTAGGGCTGTTTGT
AGTTCTTTTAATGGTCCAACGCAAGAAGGAGCCTGAATTATAACACGCTT
CTTTCTATTGCACGAATCCTTTAGTAGATGCCAGCGGCCTTTCTTCTTTC
TATTCTTTTGACCTACTATTCTTCACCTGAAATGATCCCTCCCCCTTACC
GTTTTAACACCCCTTCAAGAAGCTGTTTATGCTAAATGTGTGTCTTTTTT
CAGGATCTGAAGCCTCGCATGTTGAAGTACTGGCCCAACATGTTTGTAGA
TTCGGACAAGAATCATTTTTGGTAAGAATGTTGTCTGTTTTATTCGAGTG
TCTCCTTAATTCGATCAAGCTATTTTGTCTCTCTAACACGAATGTCTCCT
TAAAACTCGAACCAGTTATTTTGTCCCTTCAGTTAACAATGTCTTTTAAA
CCTTACACCGTAACTCGAGATTTCTTTAACTTTAACAAATTTGTGTTGCA
TGTGCGTGTTCGAGTTACGGTGACTCTACAACCTTTTCAAGACTAAATTA
ATACCCCTATGACACCATATTTGCAAGCTGACAATATATGCTGCAAAAAT
TCGCTTTTAAGGTCACGCAATTACAATGTAGCATTAGTGGCATAATAAAG
TCTAATTAAAGGAAATACCTCACTGGAAAGATGAATTTAAGGGGATAATT
TTGATAATATTAGCGGGCCGGCTACCATTTTTTCTACGGTGCAAATAATT
GTATATGACCATGAGAAATGTAAATATCTTTTTGGACCTATCATTTTTCA
ATGATACTAATTTTGGTAGCAGTAACTTTCTAAAAATTGTCAGAACAGCC
GAGAATCGCCGGAAAAACGGATTTTCTTGAATTTCTCGAGCTGTACTTGT
CTATTTGTCATGAAATTTTGCACACTGATGCAAAGTGGCAATACCTAAAA
TGTAAAGGAGCCCGATTTTCGAAAAACAATATCTTCCCTGCCAAAAATGC
TAGGAATATGCCAAAAAAAAACAGTTTTCATTATTAGTTTTTTCTGATAT
ATGTTACGATGTTATGTATTCATGTAACCATCTCATTTTCCGATCTGTGT
TCGCTCGTTCGTTCTTTTTCCACGATCTTTTCCATTATTGCACTTTAAAC
TGCAACTACTCAACTTTCCACAACTCGAACCTCCTCAACTCGATTATCTC
CGTAAACTCGAACGATTTTTCAGGTCTCTTGAGGAGATTCTTATGCTATT
CTTCCTCTCTATAACTCAAATTTCCGTAACACAAACAATTTTACTAACTA
TCCTCTTGGTGTTCCAGCACTTGACTATATTACACTTTCCTCTTTGCTCT
ACTCATGCCCTTTAAGTGGTTCTGAAACGAAAATTCTCTTTTCCCTCTTT
TCTAAGATCTCTTCGGTACAGTCTTAAAAACACCGAGAGAGTTGTATGTT
CAATGAAAAGGCCTCACGCATCAATCAAAACTTTAATCATCAGGTAGGTC
CAACCAGCGTTCCGTTTATGCTTATTACCTTTGAACTGGCATCTTGATAA
ATAACATGGTACAGGGCAATACAAAACTTAATCTGTTTGGTCGACAAATT
TATCCTTTTTCTTTAATTAGGGCACACGAATATGAAAAGCATGGCACATG
CGCAGAAAGTGTTCCAGGCTTTAAAACAGAGCACGAATTCTTTAATAGTG
CATTGAACTTACGTGACGAACATGATATTGGAAAGTAAGTAGTTGATTGA
TTATATATAGCCTGTACAAACCCGCCTGCGGGTGATTTTTTTTCTAATTT
TAATATCTTTTCGCGTTGTTTACTCCCCGTTATCTTTTTGGTACTAAACT
AATGTAATTATATCAGTGGGAATAGAAAATTTTCTCTTGAGAATACTTTG
TTTCTAACAACGATCAATGTTCAATACACGTCGCTAATGGGAACTCTCCC
AGGTTATGCAATTCTATTCTAGATGTATGGGCTACTCTTGGTACAATACG
TACTTAGGGTGATGTTAAGCATAATACCATCCTGCCCGTGTATCGAGAGA
AAAGGATTGGCAGAACCTGGTACTCTTAGGCTACAAATAAACGAGGGGGT
TCGAATAAACGGGGGGAGGGGGTTGGAAAATTTTCCAGATTTTGATAAAC
GGGGGGACCTAATTGCCGGTGAGGTTGGAAATTGTACTTCTAAAAACCAA
AAAATAAGATAAATATTATTAGTTACACGGTCTCTCGAGGTGGGATACGG
GATATACAGGGCCAGTAAAAACCGCATTGGTGGCGGGGCTTGCCGAGTTT
TTTCTCAATCAAATGTGAGGAAGACAGATACGGTTTATATCCCACCTCCA
CGTGATGTCTTTCGACCAATTTAATCGCGAGAATCTTAATGATGCGGGAT
AAAGGCTAAAATCAGGCTATTTAGAGCAAAATAAGGGGCCTTCTCTTTGA
CAGCTGAAAATATTCTTGAAAATTAATAAATGGGGAATCCTATAAGGCCC
GGGGGGTTGGAAAATTTTCAAATTAACAAGCGGGGGGCGTTTATTTGGAA
CCTAAGAGTAAGCACGCTACTCTGTTGGTTCTGTACAATGTAAGGTTTAA
TCTCTCTTACTTTCTCTTCGATAGCATTCTTGCCAGTCAAGGAATCACAC
CACGAGATCAACCATACGAGGTATTCTGAAATATTCTGTTTAAACTCTCT
GACCCCCCCTGTTTTCATTGTTAGCTACTCCTAAGAAGATGGGTTATTAG
TCCAAATACTGACTATACAGTAAAACCTCTAATTAACGGACACTCTAAAA
GGCAGACACCTCTGATTAGCGGACAATTTCATTTTCCCCGGCCGTTTCCT
AGTCAAATTCTCATAAAAAAGTTTCCAAAAGGTGGACACTCGATTAGTGG
ACCCTCTGATTAGCGGACAAATTTTTTCGCACGAAATGGCCAAACCCCCT
ATTTTAGCTCTCCAATTAGCGGACATTGAATATCAAACGGGTCACAGACG
TACAAAATCGAAATTTTTTTTAGATATTTTTATTTCAAGCACTTAGTAGT
CTTATTATTCAAATTATTTCTACAAATTTCCAGTTTTCCCTTAACCCATT
CAACGAATTTAGGTGGGCTAAAGAAATCATAAATCACTGGTACTTCAAGT
CCGTACTTACCACCTGGATTTAACCTCTTGCCAGTCACTCGAGCTCTGTT
TTAATAACCTTTCTCTTGTTCTTCTATGGCCTAGTGTCTGCAAATAAGTA
TTTTAGACCCCAATTTTGTATTTTCGACACCCTGGGATGGCCTAATTTCA
AAATTGGAGCTCAGAGATCAAAAGTTTCTAAAAGGCGGACACTTCTAATT
AGCGGACACTAACCCCTTTCCCCGATGGTGTCCGCTAATTAGAGGTTCCA
CTGTATGTTATATCACCAGAGGCTAACATTTTGCAATCTATTGCTAGTAC
GCGTCTTCATAAGGGAAAAGGTTTTTAACCCATCAAGTGCCACACTGCCA
TCGTATATGGGATCGCTCAATTTTTTCGGTCCTGTACCGGTATTTTTTAT
AGTTTTGTTAGATATGCGCATATTTGAAATCAATTTTTGTTTTGAAAATT
TGAAGTTACAAAAGCTCTAAAAGGGAAGGAAACGTATACTTCTGACATAC
CTATCGAAAACATACTTCTTCTAGCGTAAATTATGAAAAATATCTTTTGT
AATATTTTTTTTCTTTAGGGTTCTGATCTGAACGATGCATTGAACAAAGG
ATTGGGGAAGACAGGATGTGTGCAATGTCAAAAAATTAACGTAAGTTAAA
ACTATTCTGGTACTCCAGCTCTTTGAGTTGAGGGGGCAAGTTCGCCTAAA
CACTTGTAGTTGGCAGCTAATCAAATTTTCTGATATTTAATCTCACTTAT
TGAGGCAGATGATGTCCTTCATTTTTGACTAAAAAACCTACAAGCCTAAC
AGCTCAGTTGACTTTTGAATAGTCGGTATTGAATTTACAAGGAAAACTCG
AACCCAGTTCCCTCAAGCATTGTCAACAAAACATCCACCAAGCGCGTTGG
AAGGCCGAAATTTTCAAATCATTTTATATCATTCCCTTTTCCCACCTCCA
AACACCCCAAGTGACATATCAATTCCCATCGAGTTTCAGTCAATTATTTT
TATCACCACTGGCTGAAAAAATTATATCGAGTCTGTGAGAAGGGGGTTGT
TATGAAGGGTAACAGTGTTTTAAAAGGTAACATTAAAATTAAAAATCTTT
TTTATGACAGGAAATTGGTTATGTCATTTCGGCTGCCGTAGTTTGTCTGA
GTAAATCAAAAGAAGTGATCGATTGTCCATATTGTGAACATAAATGTTTG
GATGAAGAGAAAGTTTACTATCAACCCATCCGGGGATAATATTTATAATT
CTAATGAATTTTAATTTTTGCTGCTATACACCTTTTCGACCGCAGCCGCC
AATTGCCGCCAATTCTGTCCATTTTACCACCCTAAAACCGTCCCAGTCTT
TTTTTCGCGCCTAAAGACAATATAAAAAAGTGTAAAAAAAGGATTAGATC
GAGTTTAGGGTGGTCAATTAAATAATAAAGTGGCACGCGCCTGATCGCGC
GACTACGGTCGAAAAGGTATATTAACTAACCGTGGCATTGTTAGCTTTTT
A

Coding sequence (CDS) from alignment at scaffold_456:765943..773193-

>TCONS_00066588 ID=TCONS_00066588|Name=TCONS_00066588|organism=Clytia hemisphaerica|type=CDS|length=7884bp|location=Sequence derived from alignment at scaffold_456:765943..773193- (Clytia hemisphaerica)
GAAATTGGTTATGTCATTTCGGCTGCCGTAGTTTGTCTGAGTAAATCAAA
AGAAGTGATCGATTGTCCATATTGTGAACATAAATGTTTGGATGAAGAGA
AAGTTTACTATCAACCCATCCGGGGATAAGGTTCTGATCTGAACGATGCA
TTGAACAAAGGATTGGGGAAGACAGGATGTGTGCAATGTCAAAAAATTAA
CCATTCTTGCCAGTCAAGGAATCACACCACGAGATCAACCATACGAGGGC
ACACGAATATGAAAAGCATGGCACATGCGCAGAAAGTGTTCCAGGCTTTA
AAACAGAGCACGAATTCTTTAATAGTGCATTGAACTTACGTGACGAACAT
GATATTGGAAAGATCTGAAGCCTCGCATGTTGAAGTACTGGCCCAACATG
TTTGTAGATTCGGACAAGAATCATTTTTGGTAACACATGAGCACACATGT
GTCATCCCAAAGTATGTTGATGGCTGGACACTTCATGGTCTATGGCCTTC
AACCAATGTCGAAAAGAATTACCCAACAGAGTGTACTAATGAAAAGTTTG
ATCCCGAGGAAGTCAGGGAGACATAGACGTCATCACCATTCAAAACATCA
CCATTCAAAACATGGCTCATCCAAACAGGTTTCTACAGGCAGTCAAGGAG
GAAACCATGATATGAATAATTGGGATTTCTTCATGTTAGTGCAACAATGG
CCTCTTTCATCATGCGAGAAAGAAAATCAATAATTTCTCTTTAGCAATGA
AGATCTGTTTTGCTGTGTTATTGATATTGGCTGTCTTGGCCATCGTTGAA
TCAAGGTGGCGCAAGACATATTTCAGTACAATTTTAGCCGTTCAAGATTA
CTTCTCTTAGTGATAAGTACGGTAAGGAAATTGGTTATGTCATTTCGGCT
GCCGTAGTTTGTCTGAGTAAATCAAAAGAAGTGATCGATTGTCCATATTG
TGAACATAAATGTTTGGATGAAGAGAAAGTTTACTATCAACCCATCCGGG
GATAAGGTTCTGATCTGAACGATGCATTGAACAAAGGATTGGGGAAGACA
GGATGTGTGCAATGTCAAAAAATTAACCATTCTTGCCAGTCAAGGAATCA
CACCACGAGATCAACCATACGAGGGCACACGAATATGAAAAGCATGGCAC
ATGCGCAGAAAGTGTTCCAGGCTTTAAAACAGAGCACGAATTCTTTAATA
GTGCATTGAACTTACGTGACGAACATGATATTGGAAAGATCTGAAGCCTC
GCATGTTGAAGTACTGGCCCAACATGTTTGTAGATTCGGACAAGAATCAT
TTTTGGTAACACATGAGCACACATGTGTCATCCCAAAGTATGTTGATGGC
TGGACACTTCATGGTCTATGGCCTTCAACCAATGTCGAAAAGAATTACCC
AACAGAGTGTACTAATGAAAAGTTTGATCCCGAGGAAGTCAGGGAGACAT
AGACGTCATCACCATTCAAAACATCACCATTCAAAACATGGCTCATCCAA
ACAGGTTTCTACAGGCAGTCAAGGAGGAAACCATGATATGAATAATTGGG
ATTTCTTCATGTTAGTGCAACAATGGCCTCTTTCATCATGCGAGAAAGAA
AATCAATAATTTCTCTTTAGCAATGAAGATCTGTTTTGCTGTGTTATTGA
TATTGGCTGTCTTGGCCATCGTTGAATCAAGGTGGCGCAAGACATATTTC
AGTACAATTTTAGCCGTTCAAGATTACTTCTCTTAGTGATAAGTACGGTA
AGGAAATTGGTTATGTCATTTCGGCTGCCGTAGTTTGTCTGAGTAAATCA
AAAGAAGTGATCGATTGTCCATATTGTGAACATAAATGTTTGGATGAAGA
GAAAGTTTACTATCAACCCATCCGGGGATAAGGTTCTGATCTGAACGATG
CATTGAACAAAGGATTGGGGAAGACAGGATGTGTGCAATGTCAAAAAATT
AACCATTCTTGCCAGTCAAGGAATCACACCACGAGATCAACCATACGAGG
GCACACGAATATGAAAAGCATGGCACATGCGCAGAAAGTGTTCCAGGCTT
TAAAACAGAGCACGAATTCTTTAATAGTGCATTGAACTTACGTGACGAAC
ATGATATTGGAAAGATCTGAAGCCTCGCATGTTGAAGTACTGGCCCAACA
TGTTTGTAGATTCGGACAAGAATCATTTTTGGTAACACATGAGCACACAT
GTGTCATCCCAAAGTATGTTGATGGCTGGACACTTCATGGTCTATGGCCT
TCAACCAATGTCGAAAAGAATTACCCAACAGAGTGTACTAATGAAAAGTT
TGATCCCGAGGAAGTCAGGGAGACATAGACGTCATCACCATTCAAAACAT
CACCATTCAAAACATGGCTCATCCAAACAGGTTTCTACAGGCAGTCAAGG
AGGAAACCATGATATGAATAATTGGGATTTCTTCATGTTAGTGCAACAAT
GGCCTCTTTCATCATGCGAGAAAGAAAATCAATAATTTCTCTTTAGCAAT
GAAGATCTGTTTTGCTGTGTTATTGATATTGGCTGTCTTGGCCATCGTTG
AATCAAGGTGGCGCAAGACATATTTCAGTACAATTTTAGCCGTTCAAGAT
TACTTCTCTTAGTGATAAGTACGGTAAGGAAATTGGTTATGTCATTTCGG
CTGCCGTAGTTTGTCTGAGTAAATCAAAAGAAGTGATCGATTGTCCATAT
TGTGAACATAAATGTTTGGATGAAGAGAAAGTTTACTATCAACCCATCCG
GGGATAAGGTTCTGATCTGAACGATGCATTGAACAAAGGATTGGGGAAGA
CAGGATGTGTGCAATGTCAAAAAATTAACCATTCTTGCCAGTCAAGGAAT
CACACCACGAGATCAACCATACGAGGGCACACGAATATGAAAAGCATGGC
ACATGCGCAGAAAGTGTTCCAGGCTTTAAAACAGAGCACGAATTCTTTAA
TAGTGCATTGAACTTACGTGACGAACATGATATTGGAAAGATCTGAAGCC
TCGCATGTTGAAGTACTGGCCCAACATGTTTGTAGATTCGGACAAGAATC
ATTTTTGGTAACACATGAGCACACATGTGTCATCCCAAAGTATGTTGATG
GCTGGACACTTCATGGTCTATGGCCTTCAACCAATGTCGAAAAGAATTAC
CCAACAGAGTGTACTAATGAAAAGTTTGATCCCGAGGAAGTCAGGGAGAC
ATAGACGTCATCACCATTCAAAACATCACCATTCAAAACATGGCTCATCC
AAACAGGTTTCTACAGGCAGTCAAGGAGGAAACCATGATATGAATAATTG
GGATTTCTTCATGTTAGTGCAACAATGGCCTCTTTCATCATGCGAGAAAG
AAAATCAATAATTTCTCTTTAGCAATGAAGATCTGTTTTGCTGTGTTATT
GATATTGGCTGTCTTGGCCATCGTTGAATCAAGGTGGCGCAAGACATATT
TCAGTACAATTTTAGCCGTTCAAGATTACTTCTCTTAGTGATAAGTACGG
TAAGGAAATTGGTTATGTCATTTCGGCTGCCGTAGTTTGTCTGAGTAAAT
CAAAAGAAGTGATCGATTGTCCATATTGTGAACATAAATGTTTGGATGAA
GAGAAAGTTTACTATCAACCCATCCGGGGATAAGGTTCTGATCTGAACGA
TGCATTGAACAAAGGATTGGGGAAGACAGGATGTGTGCAATGTCAAAAAA
TTAACCATTCTTGCCAGTCAAGGAATCACACCACGAGATCAACCATACGA
GGGCACACGAATATGAAAAGCATGGCACATGCGCAGAAAGTGTTCCAGGC
TTTAAAACAGAGCACGAATTCTTTAATAGTGCATTGAACTTACGTGACGA
ACATGATATTGGAAAGATCTGAAGCCTCGCATGTTGAAGTACTGGCCCAA
CATGTTTGTAGATTCGGACAAGAATCATTTTTGGTAACACATGAGCACAC
ATGTGTCATCCCAAAGTATGTTGATGGCTGGACACTTCATGGTCTATGGC
CTTCAACCAATGTCGAAAAGAATTACCCAACAGAGTGTACTAATGAAAAG
TTTGATCCCGAGGAAGTCAGGGAGACATAGACGTCATCACCATTCAAAAC
ATCACCATTCAAAACATGGCTCATCCAAACAGGTTTCTACAGGCAGTCAA
GGAGGAAACCATGATATGAATAATTGGGATTTCTTCATGTTAGTGCAACA
ATGGCCTCTTTCATCATGCGAGAAAGAAAATCAATAATTTCTCTTTAGCA
ATGAAGATCTGTTTTGCTGTGTTATTGATATTGGCTGTCTTGGCCATCGT
TGAATCAAGGTGGCGCAAGACATATTTCAGTACAATTTTAGCCGTTCAAG
ATTACTTCTCTTAGTGATAAGTACGGTAAGGAAATTGGTTATGTCATTTC
GGCTGCCGTAGTTTGTCTGAGTAAATCAAAAGAAGTGATCGATTGTCCAT
ATTGTGAACATAAATGTTTGGATGAAGAGAAAGTTTACTATCAACCCATC
CGGGGATAAGGTTCTGATCTGAACGATGCATTGAACAAAGGATTGGGGAA
GACAGGATGTGTGCAATGTCAAAAAATTAACCATTCTTGCCAGTCAAGGA
ATCACACCACGAGATCAACCATACGAGGGCACACGAATATGAAAAGCATG
GCACATGCGCAGAAAGTGTTCCAGGCTTTAAAACAGAGCACGAATTCTTT
AATAGTGCATTGAACTTACGTGACGAACATGATATTGGAAAGATCTGAAG
CCTCGCATGTTGAAGTACTGGCCCAACATGTTTGTAGATTCGGACAAGAA
TCATTTTTGGTAACACATGAGCACACATGTGTCATCCCAAAGTATGTTGA
TGGCTGGACACTTCATGGTCTATGGCCTTCAACCAATGTCGAAAAGAATT
ACCCAACAGAGTGTACTAATGAAAAGTTTGATCCCGAGGAAGTCAGGGAG
ACATAGACGTCATCACCATTCAAAACATCACCATTCAAAACATGGCTCAT
CCAAACAGGTTTCTACAGGCAGTCAAGGAGGAAACCATGATATGAATAAT
TGGGATTTCTTCATGTTAGTGCAACAATGGCCTCTTTCATCATGCGAGAA
AGAAAATCAATAATTTCTCTTTAGCAATGAAGATCTGTTTTGCTGTGTTA
TTGATATTGGCTGTCTTGGCCATCGTTGAATCAAGGTGGCGCAAGACATA
TTTCAGTACAATTTTAGCCGTTCAAGATTACTTCTCTTAGTGATAAGTAC
GGTAAGGAAATTGGTTATGTCATTTCGGCTGCCGTAGTTTGTCTGAGTAA
ATCAAAAGAAGTGATCGATTGTCCATATTGTGAACATAAATGTTTGGATG
AAGAGAAAGTTTACTATCAACCCATCCGGGGATAAGGTTCTGATCTGAAC
GATGCATTGAACAAAGGATTGGGGAAGACAGGATGTGTGCAATGTCAAAA
AATTAACCATTCTTGCCAGTCAAGGAATCACACCACGAGATCAACCATAC
GAGGGCACACGAATATGAAAAGCATGGCACATGCGCAGAAAGTGTTCCAG
GCTTTAAAACAGAGCACGAATTCTTTAATAGTGCATTGAACTTACGTGAC
GAACATGATATTGGAAAGATCTGAAGCCTCGCATGTTGAAGTACTGGCCC
AACATGTTTGTAGATTCGGACAAGAATCATTTTTGGTAACACATGAGCAC
ACATGTGTCATCCCAAAGTATGTTGATGGCTGGACACTTCATGGTCTATG
GCCTTCAACCAATGTCGAAAAGAATTACCCAACAGAGTGTACTAATGAAA
AGTTTGATCCCGAGGAAGTCAGGGAGACATAGACGTCATCACCATTCAAA
ACATCACCATTCAAAACATGGCTCATCCAAACAGGTTTCTACAGGCAGTC
AAGGAGGAAACCATGATATGAATAATTGGGATTTCTTCATGTTAGTGCAA
CAATGGCCTCTTTCATCATGCGAGAAAGAAAATCAATAATTTCTCTTTAG
CAATGAAGATCTGTTTTGCTGTGTTATTGATATTGGCTGTCTTGGCCATC
GTTGAATCAAGGTGGCGCAAGACATATTTCAGTACAATTTTAGCCGTTCA
AGATTACTTCTCTTAGTGATAAGTACGGTAAGGAAATTGGTTATGTCATT
TCGGCTGCCGTAGTTTGTCTGAGTAAATCAAAAGAAGTGATCGATTGTCC
ATATTGTGAACATAAATGTTTGGATGAAGAGAAAGTTTACTATCAACCCA
TCCGGGGATAAGGTTCTGATCTGAACGATGCATTGAACAAAGGATTGGGG
AAGACAGGATGTGTGCAATGTCAAAAAATTAACCATTCTTGCCAGTCAAG
GAATCACACCACGAGATCAACCATACGAGGGCACACGAATATGAAAAGCA
TGGCACATGCGCAGAAAGTGTTCCAGGCTTTAAAACAGAGCACGAATTCT
TTAATAGTGCATTGAACTTACGTGACGAACATGATATTGGAAAGATCTGA
AGCCTCGCATGTTGAAGTACTGGCCCAACATGTTTGTAGATTCGGACAAG
AATCATTTTTGGTAACACATGAGCACACATGTGTCATCCCAAAGTATGTT
GATGGCTGGACACTTCATGGTCTATGGCCTTCAACCAATGTCGAAAAGAA
TTACCCAACAGAGTGTACTAATGAAAAGTTTGATCCCGAGGAAGTCAGGG
AGACATAGACGTCATCACCATTCAAAACATCACCATTCAAAACATGGCTC
ATCCAAACAGGTTTCTACAGGCAGTCAAGGAGGAAACCATGATATGAATA
ATTGGGATTTCTTCATGTTAGTGCAACAATGGCCTCTTTCATCATGCGAG
AAAGAAAATCAATAATTTCTCTTTAGCAATGAAGATCTGTTTTGCTGTGT
TATTGATATTGGCTGTCTTGGCCATCGTTGAATCAAGGTGGCGCAAGACA
TATTTCAGTACAATTTTAGCCGTTCAAGATTACTTCTCTTAGTGATAAGT
ACGGTAAGGAAATTGGTTATGTCATTTCGGCTGCCGTAGTTTGTCTGAGT
AAATCAAAAGAAGTGATCGATTGTCCATATTGTGAACATAAATGTTTGGA
TGAAGAGAAAGTTTACTATCAACCCATCCGGGGATAAGGTTCTGATCTGA
ACGATGCATTGAACAAAGGATTGGGGAAGACAGGATGTGTGCAATGTCAA
AAAATTAACCATTCTTGCCAGTCAAGGAATCACACCACGAGATCAACCAT
ACGAGGGCACACGAATATGAAAAGCATGGCACATGCGCAGAAAGTGTTCC
AGGCTTTAAAACAGAGCACGAATTCTTTAATAGTGCATTGAACTTACGTG
ACGAACATGATATTGGAAAGATCTGAAGCCTCGCATGTTGAAGTACTGGC
CCAACATGTTTGTAGATTCGGACAAGAATCATTTTTGGTAACACATGAGC
ACACATGTGTCATCCCAAAGTATGTTGATGGCTGGACACTTCATGGTCTA
TGGCCTTCAACCAATGTCGAAAAGAATTACCCAACAGAGTGTACTAATGA
AAAGTTTGATCCCGAGGAAGTCAGGGAGACATAGACGTCATCACCATTCA
AAACATCACCATTCAAAACATGGCTCATCCAAACAGGTTTCTACAGGCAG
TCAAGGAGGAAACCATGATATGAATAATTGGGATTTCTTCATGTTAGTGC
AACAATGGCCTCTTTCATCATGCGAGAAAGAAAATCAATAATTTCTCTTT
AGCAATGAAGATCTGTTTTGCTGTGTTATTGATATTGGCTGTCTTGGCCA
TCGTTGAATCAAGGTGGCGCAAGACATATTTCAGTACAATTTTAGCCGTT
CAAGATTACTTCTCTTAGTGATAAGTACGGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041640XLOC_041640Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066588-exon-scaffold_456-1575043694:773128..773193TCONS_00066588-exon-scaffold_456-1575043694:773128..773193Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1575043694:772459..772542TCONS_00066588-exon-scaffold_456-1575043694:772459..772542Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1575043694:771851..772010TCONS_00066588-exon-scaffold_456-1575043694:771851..772010Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1575043694:770716..770853TCONS_00066588-exon-scaffold_456-1575043694:770716..770853Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1575043694:770273..770340TCONS_00066588-exon-scaffold_456-1575043694:770273..770340Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1575043694:768860..768973TCONS_00066588-exon-scaffold_456-1575043694:768860..768973Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1575043694:767924..767969TCONS_00066588-exon-scaffold_456-1575043694:767924..767969Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1575043694:766804..766875TCONS_00066588-exon-scaffold_456-1575043694:766804..766875Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1575043694:765943..766333TCONS_00066588-exon-scaffold_456-1575043694:765943..766333Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1510915933:773128..773193TCONS_00066588-exon-scaffold_456-1510915933:773128..773193Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1510915933:772459..772542TCONS_00066588-exon-scaffold_456-1510915933:772459..772542Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1510915933:771851..772010TCONS_00066588-exon-scaffold_456-1510915933:771851..772010Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1510915933:770716..770853TCONS_00066588-exon-scaffold_456-1510915933:770716..770853Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1510915933:770273..770340TCONS_00066588-exon-scaffold_456-1510915933:770273..770340Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1510915933:768860..768973TCONS_00066588-exon-scaffold_456-1510915933:768860..768973Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1510915933:767924..767969TCONS_00066588-exon-scaffold_456-1510915933:767924..767969Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1510915933:766804..766875TCONS_00066588-exon-scaffold_456-1510915933:766804..766875Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1510915933:765943..766333TCONS_00066588-exon-scaffold_456-1510915933:765943..766333Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1491911889:773128..773193TCONS_00066588-exon-scaffold_456-1491911889:773128..773193Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1491911889:772459..772542TCONS_00066588-exon-scaffold_456-1491911889:772459..772542Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1491911889:771851..772010TCONS_00066588-exon-scaffold_456-1491911889:771851..772010Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1491911889:770716..770853TCONS_00066588-exon-scaffold_456-1491911889:770716..770853Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1491911889:770273..770340TCONS_00066588-exon-scaffold_456-1491911889:770273..770340Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1491911889:768860..768973TCONS_00066588-exon-scaffold_456-1491911889:768860..768973Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1491911889:767924..767969TCONS_00066588-exon-scaffold_456-1491911889:767924..767969Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1491911889:766804..766875TCONS_00066588-exon-scaffold_456-1491911889:766804..766875Clytia hemisphaericaexon
TCONS_00066588-exon-scaffold_456-1491911889:765943..766333TCONS_00066588-exon-scaffold_456-1491911889:765943..766333Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066588-proteinTCONS_00066588-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:765943..773193 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.114444	0.111729	0.346698	0.381162	0.0515147	0.326133	3.58032	3.40832	8.99199	4.22345	4.97143	3.56775	0.762167	0.501276	46.3562	46.31	1.83281	1.05705	0.407106	0.638086	0.258286	0.162388	0.13122	0.0795318	0.122874	0.255878	0.314196	0.446827	0.211707	0.129418
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001568RNase_T2-like
IPR018188RNase_T2_His_AS_1
IPR033130RNase_T2_His_AS_2
IPR033697Ribonuclease_T2_eukaryotic
Vocabulary: Molecular Function
TermDefinition
GO:0033897ribonuclease T2 activity
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0033897 ribonuclease T2 activity
molecular_function GO:0003723 RNA binding
Blast
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BLAST of TCONS_00066588 vs. Swiss-Prot (Human)
Match: RNT2 (Ribonuclease T2 OS=Homo sapiens GN=RNASET2 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.845e-28
Identity = 65/195 (33.33%), Postives = 101/195 (51.79%), Query Frame = 2 
Query:  239 HDMNNWDFFMLVQQWPLSSCEKENVTHEHTCVIPKYVDGWTLHGLWP--STNVEKNYPTECTNEKFDPEEVRDLKPRMLKYWPNMFVD-SDKNHFWAHEYEKHGTCAESVPGFKTEHEFFNSALNLRDEHDIGNILASQGITPRDQPYEGSDLNDALNKGLGKTGCVQC--QKINEIGYVISAAVVCLSKSKEVI 808
             D + W   ++VQ WP + CEK     ++ C  P   D WT+HGLWP  S    +++P       F+ EE++DL P M  YWP++     +++ FW HE+EKHGTCA  V    ++ ++F  +L L  E D+ ++L   GI P    Y+ +D  DAL +  G    +QC     +E    I    +CL+K  + +
Sbjct:   29 RDNHEWKKLIMVQHWPETVCEK----IQNDCRDPP--DYWTIHGLWPDKSEGCNRSWP-------FNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPSQDEEVQTIGQIELCLTKQDQQL 210
The following BLAST results are available for this feature:
BLAST of TCONS_00066588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNT27.845e-2833.33Ribonuclease T2 OS=Homo sapiens GN=RNASET2 PE=1 SV... [more]
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