TCONS_00066939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066939
Unique NameTCONS_00066939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1142

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066939 ID=TCONS_00066939|Name=TCONS_00066939|organism=Clytia hemisphaerica|type=transcript|length=1142bp
CGAAGCTTTTCGGTACCGTAAACTTTACCCGACGCTTTCAGCAGCGCGTG
CgcaattaaaaatttattttgataagcGAGATCTCTCCTCTAGACGCCTG
AAGAAATGGTTGTTGTTGAAGCTTGAAGGGAGTTTTCATCCATTAGCATC
GTCTGAAATTTTACTGAAAAGGCTTGGTTTATAACGTTATTGCAAATATG
ACAGCTGAAGTCGAAACTGCACAGACAGAAACTGTCACTTCCCCTATGGA
AGAAACTCCAGCTGAGGACCCTTCTGCCACCTCTGAAACAGAAAGTGATA
GTGATGATGAAGTCCCCATGTTGGAAGATGTAGAAGATGATGCAACTAAC
AAATCAGATGCTTTTGCTGCTGCTGGAATCCAAGAAGAACCTGTCAGTAA
ATCTAAACAAAGTAGAAGTGAAAAAAAGGCACGAAAAGCCATTCAGAGAC
TCGGACTTAAACAAGTTACTGGTGTTACACGAGTAACGATACGTAAAacg
aaaaatatattgtttgttataaaaaaacCAGATGTATATAAAAGCCCAAC
TGGAGACACGTATATTGTTTTTGGAGAAGCCAAGATTGAAGACTTATCAC
AACAAGCACAAGTACAGGCTGCTGAAAAATTCAAGGAACCAGAACCAGTG
AACCCAGCTGTGTCAGATACCAAAGTTGAAGCTGCTGATGCAGAAGAATC
TGACGATGAAGAAGTTGACGAAACTGGAGTCGAAGAAAAAGATATTGAAC
TCGTTATTCAACAATCGAACGTTTCTCGTAAGAAGGCCATAAAAGCACTG
AAAAAGAATGATGGTGATATTGTTAATGCTATCATGGAACTGACGATGTA
AATGGCAAAACTATCAAAACCTTCAAGCATTCTGACATCTACGCAAATCA
ATACACAGGGATTGTGTTTGATGAGTGGGGCATACAACCTCATGTACAAA
ACCACCAAACTTTGTATACAGACCTCtttgtaataaaatataaataaacc
aCACCTCGTTCATTCGTTCTTCAGTATTCTCCGTGTGGTTCCAGTTCCCA
TTGTGATTAGCTCCTTGTCCCGGGGAGAAAGGGATGCtgtgagccataag
ggtaccctTATTTATACCGAAAAAATCTCTTTtcgaaataat
Run BLAST on NCBI

protein sequence of TCONS_00066939-protein

>TCONS_00066939-protein ID=TCONS_00066939-protein|Name=TCONS_00066939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MTAEVETAQTETVTSPMEETPAEDPSATSETESDSDDEVPMLEDVEDDAT
NKSDAFAAAGIQEEPVSKSKQSRSEKKARKAIQRLGLKQVTGVTRVTIRK
TKNILFVIKKPDVYKSPTGDTYIVFGEAKIEDLSQQAQVQAAEKFKEPEP
VNPAVSDTKVEAADAEESDDEEVDETGVEEKDIELVIQQSNVSRKKAIKA
LKKNDGDIVNAIMELTM
Run BLAST on NCBI

transcript from alignment at scaffold_462:7179..15838-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066939 ID=TCONS_00066939|Name=TCONS_00066939|organism=Clytia hemisphaerica|type=transcript|length=8660bp|location=Sequence derived from alignment at scaffold_462:7179..15838- (Clytia hemisphaerica)
CGAAGCTTTTCGGTACCGTAAACTTTACCCGACGCTTTCAGCAGCGCGTG
CGCAATTAAAAATTTATTTTGATAAGCGAGATCTCTCCTCTAGACGCCTG
AAGAAATGGTTGTTGTTGAAGCTTGAAGGGAGTTTTCATCCATTAGCATC
GTCTGAAATTTTACTGAAAAGGCTTGGTTTATAACGTTATTGCAAAGTAA
GGGTTTTGAAGTTTGCTCTTTGGATTCTATTTTTCCAGTAGGAGATTGCA
CAGCTCTTATATTGTCTATTTTTTCGCATTTCAGTATGACAGCTGAAGTC
GAAACTGCACAGACAGAAACTGTCACTTCCCCTATGGAAGAAACTCCAGC
TGAGGACCCTTGTAAGTAGAAATTTACGTAGAGCTAGAAGTTGCCAACCT
CTGTCAAATGTTAGGGTAATTGATTGTATTTGCTTGTCAAATAGAACCAG
ACCTTAGTTTTGCATACTGGTAGATAATTTAGTCAAACCAAAAAGATTTC
TTTTGGGTCCATTAAAATGTTCATGAGGTGTAGGGATTTTTCCAATTCTT
TGAATTACTGAGGAGTCCAATGATGCAACAGAAGGTCATACCCAATCCAC
GTAATCTTGTCTAGTAGCGGTCAAATTTTTGTTTTGGATCAGCCTTTAGG
CTTTAGACCTTCCTTCTAGGAAATCTGATCTTGTTCAGTCCTGACAGGTA
CTGGCCACTCGTTAATGTTTAGGGGAGCCTTCCAAACTCGTACGGAAAAC
GTCAAATGGACGTTTAGGGGGTAGGGGTTTAATTTCTTGACATTCTTTTG
TGCCAAATAAATTTTCACCAGAAATATCAGGACCCTCCCAGTGCTCCAGA
AACTTCCGGAGTTTTCCAGAGCAGCTAAAAAACACTAAAGTTCCGGAGCT
TTTCCGGTGCTTCCGGAGCAAGCGATTTTTAACATGTTAAAACCGTTTAA
ACGTAGTTACAAAAAATATTCATCCCCAGGTGATGGACTTTGGTCATAAA
CAAGAAATTATCATGCGCGTCACTTGAGTTGATTGTGATTGATTATGAAA
ACATTGTTGATTACATTATATTGAATGCATTATATTCAAAGTATCCACTG
GTCATAATATCGAAAAAATTAAAAAGCGTGAGGTTGGCTGGTTTTTTAAA
AATGTTAGTTTTTACATGACCGGTTTTTTCTGTCGCTTTATATTATGGAG
TTGAAAATTCCGGGATTATTGGTGAACAAGTTTAGAAATTATCTCCGTTA
ATTCTTAAATGTAAACTATGCAAGCTGTAGCAAAAATAAAGATGGCTGAC
GAAACAACGATGGAATATTCACAGCGAGCAATGGGAGAAAGGCTGAATAT
TTCGAGATCAAGTTTGATTGCCACGGCTGACATTATTTGAAGGGGGTGGG
GTTCAAAATCAAAATCCATTTGACGTTTTCCGTGGCAAGTCTGAGTTTGG
AATGCTCTCCTTATTAGATACAACATTGTCAAAAAATTGTTAGGGGATAA
AGAGAACCCAAGGCATATAAAACAATGATGACCTGGATAAATAAATTGGA
AAAGTCAAACATTTTTAGAAAAGAGATGCATATTTTTTAATCGAATAAAG
ACAGACAAGTCACTCAAAGCTTTCAAAAAACTACAAAGAAGGTACTCTTA
TAGGAGGTTACTAGAGATTGAAAGTGTAAAATCGAAATGAAAAATTAACT
TGTTCTATGATTTAATTGCAAACTTTTGAGAATATCTACCTGGTTATGCC
TTTGTTTTCGAAATTTTATTTTCCTGATTGTAAACTCCCCAAAACTTTTG
CATGAATTAAATTTTGAAAATGGCCAAAATTCGTGAAAAATGGGAAAATT
TTTCCACTTTTAAGTTATAAAAGTATAAATTGTCTTCAATACTCCAGGCA
AACAGCAACAGTCTATTGTATAGCTAATTACACCATACCTCAGTGAATGC
AAGTAAATCCAGTGGGAAATTGATATAACCCAAAAATAAGAAGCTTACTT
CAAATTGGCATGCTAACATTCTCCCGAAGTAGCACGCAATAAGGCTGTAA
ATTTTCCTGCACAACATTCTACTAGGTATAGTCATCTGGGGTAATTACGG
GACGATTTTGACTTATTTGGGCATCACTCTGAAAGTATTAATCCTAGAGA
TCCGATCTTTTGATATTTTATTTGTCAAAGTATGACCTTTACATAAGATG
TATTACTCTTCCTTGAAATTTAGTAGATGTTCCTAAAATTTATTTTAAAG
GTGTCCTGTAATTACCCCGCATTTGGGGGTAATTACGGGACACCCTCGGG
GTAAATATGGGACAGGTATAAAATGTTATTGAAAAATCCAGATATCTTTC
CAAAAGGTCATGATATTTGAGGTTTTGCATTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT
TGAGGTTTTGCATTCACTTGATGACTTCAAATCCAAGTGCTATCATTTAA
AGGACTTTCAACAAAATTAGTGACAGTGTCCCGTTTTTACCCCAGCTTTT
TTTCCCATTTTGGGGTAATAACGGGACACTTTCAACAGTAATATTTGTAT
AGAGTAATCTAGACCAACTGAAGTAAATTTAGATGCAAACCTTTGAAGGT
TTTGAAAGACTTAGAGTGTCGTTATGATTCCATTAAACTAGGAAATCAAG
TTTGTACTTTTCTTATAAAAAATAAACACTTGAAACTCAAACTTTAGTGT
CCCATAATTACCCCAAAATTAAGATTTGACTACGGGGTAAGTATGGGACA
CACTTTTTAGAGATAAGGTGCTTTGTTTGACAATGAGACTATTATAACCT
CAAACCATAGTATCTTGGTGCCAGAATTCAGTCAAAATATAATCAAAGTG
ATTGCAGCTCTTCCTGACACTAAAGCTTTAAAAGTTCCTTCTAAAACTAC
GAAAATTGATTTTTATGGTGACATATGAAACTTTTGTTGAAACATCAAAA
GTATATGTTAGAATAATCTAACTAGACACTTTTCTAGCAGCTAGAATGAC
TCCAAAATCCTCCCCATCTGAATCCTAATTTATAACAATAACACCATCTT
TAGGGGTGTCCCATATTTACCCCTTAATTTTAACTGTCCCGTAATTACCC
CAGATGACTATATTAGGAATTTAATCAGTAAAACAGCAGATATTAAAAAT
TTCTCACCCAAATAGCTGGAGTAATTTAATATGTGAAACTGAGTTAATAG
GTCATTGCATTCTCCCAAAAAACTATTTGGTTAATTGTAAATATTACCAA
GGGCAATTAAGCCTACCCTGGAAGGGGTTTTGATCTCAGCAAATCCTTTT
AGGATTATATTAAGTTTTATCATCTTTCCAACATGTGCATATCTTTTTTT
GCAGCTGCCACCTCTGAAACAGAAAGTGATAGTGATGATGAAGTCCCCAT
GTTGGAAGATGTAGAAGATGATGCAACTAACAAATCAGATGCTTTTGCTG
CTGCTGGAATCCAAGAAGAACCTGTCAGTAAATCTAAACAAAGTAGAAGT
GAAAAAAAGGCACGAAAAGCCATTCAGAGACTCGGACTTAAACAAGTTAC
TGGTGTTACACGAGTAACGATACGTAAAACGAAAAATATATTGTTTGTTA
TAAAAAAACCAGATGTATATAAAAGCCCAACTGGAGACACGTATATTGTT
TTTGGAGAAGCCAAGGTAGNTTGTTATAAAAAAGCCAGATGTATATAAAA
GCCCAACTGGAGACACGTATATTGTTTTTGGAGAAGCCAAGGTAGGTACA
ACCATGGATGTTTGTTTCAATATTGGTTGTCGTGATTGCATGTCACCTTA
CAAGGTGTCTTAAAGAAAACTACTACACTTTTTTTACAAGCAACCCCGAT
TTTCGGCTCAGGGTTGGAGTTGCTATGGATTTAAGCCAAAATGTTGCTTA
TGGAATTTCAGTCTAAAATGCCTAGCAACTTCAAAAAACTTTGCTTTTTA
TCTCATTTTGTGTCCAAAATACCTCGTACACATTTTAATGAAGAATAATG
CGAGAATTTTGAGGCTTTTTGGTTGCTTTTTTCAGTTCAAGCTCAGTTTC
AGGGCTCGGTTGTTAAGACCAAGTTGCTTATTTGGCCATTCTCAGGCTGA
ACCATTAGCAAATGGGTTGCTTATAAAAAAATTTGTAGTTATTTAAAATG
TGCACAATAGAGGAGATATGGTCCCTCATTTTGCACTATGTAATGGTATA
TCTTTACCCCCTGGTGACTAGGGTGCGTCATTTATATTACATTCTGTTCC
TTTTCACCAGACCAATGTATGATCTCTCCTTTCATGGGGGAGGGGGGTGG
ATAAAATGACACAGAAATTTTTAAGTCGAAAGAAATTGTGATTGCTCCAA
ACAAAATTACTTCTTGTCATTCAATTAGTTCCCTTTAGTTGGAAGCTTCT
TTGAAATTTTAGCTGTAANTGGATAAAATGACACAGAAATTTTCAAGTCG
AAAAAAATTGTGATTGCTCCAAACAAAATTACTTCTTGTCATTCAATTTA
GTTCCCTTTAGTTGGAAGCTTCTTTGAAATTTTAGCTGTAATTTTTAATT
TTAGATTAAAAACATGTAGATTCAAAAAGTTCCTATGATCCAATAAGGGA
TCTGAGTACAATTTGGAGGTTTCTTTTGTCATAACATGGTTTTTGAAGTA
CAACCTTGTCCCCACCCTGCCAAAAGTGTCCACAACTCCTGGGGTAAACA
AGAAATTATATTTAAAATGATAATTGGGAAAGTGGACTTGTGTAGGCTTT
TAGTACTGTGTTATACTTTGCCGCTTTGTAATTTTGAAATGTATTCTCCA
AAATTTAGATTGAAGACTTATCACAACAAGNTTACTTTACCGCTTTGTAA
TTTTGAAATGTATTCTCCAAAATTTAGATTGAAGACTTATCACAACAAGC
ACAAGTACAGGTATAACTAACTTTTCACCCTGTATACTGCATCAATGTTT
CAACCTGTTTTTCATATTTTAAAACTAGGAATTTATAAGAACATAAATTC
TCTACTCGCATTGCTAATGTTAATGCTAATTTTATCAATTTATCATAATA
ATTTTGTTTAGTTATTGTTAAGTGAAATTATTTTAAAGGGCTAGGTCCTA
ATTAATTCAACAACCGTTCAACTAACAGAAAAAATAATTAAAATGGTACA
TCTCCATTTTCAGGCTGCTGAAAAATTCAAGGAACCAGAACCAGTGAACC
CAGCTGTGTCAGATACCAAAGTTGAAGCTGCTGATGCAGAAGAATCTGAC
GATGAAGAAGTAAGAAATTCCTTTTGAAAAATAGTATCACTTTGATTCTG
ATTCGAGGGGACAGATGTAAATTTTTTAAATCGTGCTTGGGACTTTAACT
GCCCTTTAAAGATTGAATAATACACAATTGAATGGCTTCATGAATCAAAT
CTGTTGACAATGGATAAAACCAGTGTCATAAAACGTACAAAATCTAGCTG
GAAGCGATTCGGGAGGCCAGCTTCAGCCCATCAACACAACAAAATATTAT
TAGAGACGAATGCCTAAAAAGTCACAGGAAAAAATTATTGATTCCCTAGC
CTAGGGATTGTTCATTTTCAGATGTGTTTTTTTATTCGGTCACATTAGTC
TAAAATTTTAAGTTCGGGAAAGTAAGGAAACTAGGGAAACCTATTCTCCC
ATGTTGGAAGTGTATTACCAATGTGTTAGTGAAAACGGATTTCCACATGT
GGAAAACTAATATTTTTAACTTTCTAGTTGCCCATTCAGAATTGCATCGG
GAAATTAAAAGTCCCAAGTTTTTCTAAACTGATTATGGATGAGTCGGGAA
AAGAGAGATCACGAGTTTTTAAAATGATTACTTTCTACAGGCTAGGGAAA
GGAAATATCACGAATTGTGACCTTGCTTGCTTTATTCTATTCTTTCTCTG
GATTGGGAAATGTGATTTCTTGAATTAGGGAAATAAAATTTCCCACATTG
GGAAATTCGATTTCCCGAACTCTTTAATTTGAGTGCATCCTTTAAACAAT
TAATTAAATCAGAACTTATTTTTTAAACTGTCACAAATTAGAGCCTAAGT
TCGGAAAAATTATTTTCAGGTTAGGGAAAATTGATTTCCCACCACGAGTG
ATTTTTCACTCAAAAGTGTTCGAGTCGTATGTAAAGCAAACCATTATAAG
GGTGTATTCGATCAGTGTGTAACACAACGCTAAAGATGAAGCGTCCCGCC
AGGGCGGCCTCATTCGTTCGCAATGGACTTGCGTCGCAAGGGCTTAGTGG
ATCGGTGAGACGGGTTTGAGGTCATTAAGTTGGCTCTCTAGTGCAGCTCC
ACTGTTGTGACAAAAGTGCTGGGATTCTCAAAGTAGCACAAGTACATGTC
AGAACGAATGAGAACTATCGAACCAATGCTCACAGAATGATCGAATACAT
TTACAGTATGTGGCCCCCAAAACGGCGATCAAATTTGAAATTTCTCTCAA
ATCTAGAGGAAAAGAGATTTTACAAAAATTTTTGCTGCATGAAAACNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAAATCGTTTAATTCT
GATAAATCTACAAGTCAGAATCTTCATTTTAATGAAAACCTCCGTTTTGG
GGGCCGTCTCCGTTTTGGGGGCCGTATACTGTATTTATTTTACCAGCTTT
CTATAAATCAGGATTTAATTCGTGAATATGGGTAACCCTATGGGGTTTTA
TTGGGGTTCGCTCAAGAAAAGCACTTTTTAATAATAGGGAAATTTAACAT
CTATAGATAGTCATAAGATTGGGAAATTTCATTTCCATAACTAGGGAGCT
GTTGCATCTTCCCTATCTAGGGATTGGTTAGGGAAAAATCTAGATTTCCA
GATCTGGAAACATGCATTTCCATAGCCTAGGAAATCAAAAAAATTTTCCT
TTGAGTAAAGCGTCTTCCCTAAGTAAAAAATTTCACCTTTTCATAGGTTG
ACGAAACTGGAGTCGAAGAAAAAGATATTGAACTCGTTATTCAACAATCG
AACGTTTCTCGTAAGAAGGCCATAAAAGCACTGAAAAAGAATGATGGTGA
TATTGTTAATGCTATCATGGTAAGTGGTCCACATCTTTGCTTTTCTCTTT
TTCTATGTATGATGGAAATCTTTCTTTCTGAGCTGGGAATTTATAAATAA
TTTCGGGTTTTAATAAGAATTCCTTACAATGACTTCTCTCTTACTTTACC
ACAGGAACTGACGATGTAAATGGCAAAACTATCAAAACCTTCAAGCATTC
TGACATCTACGCAAATCAATACACAGGGATTGTGTTTGATGAGTGGGGCA
TACAACCTCATGTACAAAACCACCAAACTTTGTATACAGACCTCTTTGTA
ATAAAATATAAATAAACCACACCTCGTTCATTCGTTCTTCAGTATTCTCC
GTGTGGTTCCAGTTCCCATTGTGATTAGCTCCTTGTCCCGGGGAGAAAGG
GATGCTGTGAGCCATAAGGGTACCCTTATTTATACCGAAAAAATCTCTTT
TCGAAATAAT

Coding sequence (CDS) from alignment at scaffold_462:7179..15838-

>TCONS_00066939 ID=TCONS_00066939|Name=TCONS_00066939|organism=Clytia hemisphaerica|type=CDS|length=3924bp|location=Sequence derived from alignment at scaffold_462:7179..15838- (Clytia hemisphaerica)
GAACTGACGATGTAAGTTGACGAAACTGGAGTCGAAGAAAAAGATATTGA
ACTCGTTATTCAACAATCGAACGTTTCTCGTAAGAAGGCCATAAAAGCAC
TGAAAAAGAATGATGGTGATATTGTTAATGCTATCATGGCTGCTGAAAAA
TTCAAGGAACCAGAACCAGTGAACCCAGCTGTGTCAGATACCAAAGTTGA
AGCTGCTGATGCAGAAGAATCTGACGATGAAGAAATTGAAGACTTATCAC
AACAAGCACAAGTACAGCTGCCACCTCTGAAACAGAAAGTGATAGTGATG
ATGAAGTCCCCATGTTGGAAGATGTAGAAGATGATGCAACTAACAAATCA
GATGCTTTTGCTGCTGCTGGAATCCAAGAAGAACCTGTCAGTAAATCTAA
ACAAAGTAGAAGTGAAAAAAAGGCACGAAAAGCCATTCAGAGACTCGGAC
TTAAACAAGTTACTGGTGTTACACGAGTAACGATACGTAAAACGAAAAAT
ATATTGTTTGTTATAAAAAAACCAGATGTATATAAAAGCCCAACTGGAGA
CACGTATATTGTTTTTGGAGAAGCCAAGATGACAGCTGAAGTCGAAACTG
CACAGACAGAAACTGTCACTTCCCCTATGGAAGAAACTCCAGCTGAGGAC
CCTTGAACTGACGATGTAAGTTGACGAAACTGGAGTCGAAGAAAAAGATA
TTGAACTCGTTATTCAACAATCGAACGTTTCTCGTAAGAAGGCCATAAAA
GCACTGAAAAAGAATGATGGTGATATTGTTAATGCTATCATGGCTGCTGA
AAAATTCAAGGAACCAGAACCAGTGAACCCAGCTGTGTCAGATACCAAAG
TTGAAGCTGCTGATGCAGAAGAATCTGACGATGAAGAAATTGAAGACTTA
TCACAACAAGCACAAGTACAGCTGCCACCTCTGAAACAGAAAGTGATAGT
GATGATGAAGTCCCCATGTTGGAAGATGTAGAAGATGATGCAACTAACAA
ATCAGATGCTTTTGCTGCTGCTGGAATCCAAGAAGAACCTGTCAGTAAAT
CTAAACAAAGTAGAAGTGAAAAAAAGGCACGAAAAGCCATTCAGAGACTC
GGACTTAAACAAGTTACTGGTGTTACACGAGTAACGATACGTAAAACGAA
AAATATATTGTTTGTTATAAAAAAACCAGATGTATATAAAAGCCCAACTG
GAGACACGTATATTGTTTTTGGAGAAGCCAAGATGACAGCTGAAGTCGAA
ACTGCACAGACAGAAACTGTCACTTCCCCTATGGAAGAAACTCCAGCTGA
GGACCCTTGAACTGACGATGTAAGTTGACGAAACTGGAGTCGAAGAAAAA
GATATTGAACTCGTTATTCAACAATCGAACGTTTCTCGTAAGAAGGCCAT
AAAAGCACTGAAAAAGAATGATGGTGATATTGTTAATGCTATCATGGCTG
CTGAAAAATTCAAGGAACCAGAACCAGTGAACCCAGCTGTGTCAGATACC
AAAGTTGAAGCTGCTGATGCAGAAGAATCTGACGATGAAGAAATTGAAGA
CTTATCACAACAAGCACAAGTACAGCTGCCACCTCTGAAACAGAAAGTGA
TAGTGATGATGAAGTCCCCATGTTGGAAGATGTAGAAGATGATGCAACTA
ACAAATCAGATGCTTTTGCTGCTGCTGGAATCCAAGAAGAACCTGTCAGT
AAATCTAAACAAAGTAGAAGTGAAAAAAAGGCACGAAAAGCCATTCAGAG
ACTCGGACTTAAACAAGTTACTGGTGTTACACGAGTAACGATACGTAAAA
CGAAAAATATATTGTTTGTTATAAAAAAACCAGATGTATATAAAAGCCCA
ACTGGAGACACGTATATTGTTTTTGGAGAAGCCAAGATGACAGCTGAAGT
CGAAACTGCACAGACAGAAACTGTCACTTCCCCTATGGAAGAAACTCCAG
CTGAGGACCCTTGAACTGACGATGTAAGTTGACGAAACTGGAGTCGAAGA
AAAAGATATTGAACTCGTTATTCAACAATCGAACGTTTCTCGTAAGAAGG
CCATAAAAGCACTGAAAAAGAATGATGGTGATATTGTTAATGCTATCATG
GCTGCTGAAAAATTCAAGGAACCAGAACCAGTGAACCCAGCTGTGTCAGA
TACCAAAGTTGAAGCTGCTGATGCAGAAGAATCTGACGATGAAGAAATTG
AAGACTTATCACAACAAGCACAAGTACAGCTGCCACCTCTGAAACAGAAA
GTGATAGTGATGATGAAGTCCCCATGTTGGAAGATGTAGAAGATGATGCA
ACTAACAAATCAGATGCTTTTGCTGCTGCTGGAATCCAAGAAGAACCTGT
CAGTAAATCTAAACAAAGTAGAAGTGAAAAAAAGGCACGAAAAGCCATTC
AGAGACTCGGACTTAAACAAGTTACTGGTGTTACACGAGTAACGATACGT
AAAACGAAAAATATATTGTTTGTTATAAAAAAACCAGATGTATATAAAAG
CCCAACTGGAGACACGTATATTGTTTTTGGAGAAGCCAAGATGACAGCTG
AAGTCGAAACTGCACAGACAGAAACTGTCACTTCCCCTATGGAAGAAACT
CCAGCTGAGGACCCTTGAACTGACGATGTAAGTTGACGAAACTGGAGTCG
AAGAAAAAGATATTGAACTCGTTATTCAACAATCGAACGTTTCTCGTAAG
AAGGCCATAAAAGCACTGAAAAAGAATGATGGTGATATTGTTAATGCTAT
CATGGCTGCTGAAAAATTCAAGGAACCAGAACCAGTGAACCCAGCTGTGT
CAGATACCAAAGTTGAAGCTGCTGATGCAGAAGAATCTGACGATGAAGAA
ATTGAAGACTTATCACAACAAGCACAAGTACAGCTGCCACCTCTGAAACA
GAAAGTGATAGTGATGATGAAGTCCCCATGTTGGAAGATGTAGAAGATGA
TGCAACTAACAAATCAGATGCTTTTGCTGCTGCTGGAATCCAAGAAGAAC
CTGTCAGTAAATCTAAACAAAGTAGAAGTGAAAAAAAGGCACGAAAAGCC
ATTCAGAGACTCGGACTTAAACAAGTTACTGGTGTTACACGAGTAACGAT
ACGTAAAACGAAAAATATATTGTTTGTTATAAAAAAACCAGATGTATATA
AAAGCCCAACTGGAGACACGTATATTGTTTTTGGAGAAGCCAAGATGACA
GCTGAAGTCGAAACTGCACAGACAGAAACTGTCACTTCCCCTATGGAAGA
AACTCCAGCTGAGGACCCTTGAACTGACGATGTAAGTTGACGAAACTGGA
GTCGAAGAAAAAGATATTGAACTCGTTATTCAACAATCGAACGTTTCTCG
TAAGAAGGCCATAAAAGCACTGAAAAAGAATGATGGTGATATTGTTAATG
CTATCATGGCTGCTGAAAAATTCAAGGAACCAGAACCAGTGAACCCAGCT
GTGTCAGATACCAAAGTTGAAGCTGCTGATGCAGAAGAATCTGACGATGA
AGAAATTGAAGACTTATCACAACAAGCACAAGTACAGCTGCCACCTCTGA
AACAGAAAGTGATAGTGATGATGAAGTCCCCATGTTGGAAGATGTAGAAG
ATGATGCAACTAACAAATCAGATGCTTTTGCTGCTGCTGGAATCCAAGAA
GAACCTGTCAGTAAATCTAAACAAAGTAGAAGTGAAAAAAAGGCACGAAA
AGCCATTCAGAGACTCGGACTTAAACAAGTTACTGGTGTTACACGAGTAA
CGATACGTAAAACGAAAAATATATTGTTTGTTATAAAAAAACCAGATGTA
TATAAAAGCCCAACTGGAGACACGTATATTGTTTTTGGAGAAGCCAAGAT
GACAGCTGAAGTCGAAACTGCACAGACAGAAACTGTCACTTCCCCTATGG
AAGAAACTCCAGCTGAGGACCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041836XLOC_041836Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066939-proteinTCONS_00066939-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066939-exon-scaffold_462-1575043694:15643..15838TCONS_00066939-exon-scaffold_462-1575043694:15643..15838Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1575043694:15478..15554TCONS_00066939-exon-scaffold_462-1575043694:15478..15554Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1575043694:12074..12384TCONS_00066939-exon-scaffold_462-1575043694:12074..12384Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1575043694:10829..10861TCONS_00066939-exon-scaffold_462-1575043694:10829..10861Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1575043694:10480..10575TCONS_00066939-exon-scaffold_462-1575043694:10480..10575Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1575043694:7620..7742TCONS_00066939-exon-scaffold_462-1575043694:7620..7742Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1575043694:7179..7484TCONS_00066939-exon-scaffold_462-1575043694:7179..7484Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1510915933:15643..15838TCONS_00066939-exon-scaffold_462-1510915933:15643..15838Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1510915933:15478..15554TCONS_00066939-exon-scaffold_462-1510915933:15478..15554Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1510915933:12074..12384TCONS_00066939-exon-scaffold_462-1510915933:12074..12384Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1510915933:10829..10861TCONS_00066939-exon-scaffold_462-1510915933:10829..10861Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1510915933:10480..10575TCONS_00066939-exon-scaffold_462-1510915933:10480..10575Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1510915933:7620..7742TCONS_00066939-exon-scaffold_462-1510915933:7620..7742Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1510915933:7179..7484TCONS_00066939-exon-scaffold_462-1510915933:7179..7484Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1491911889:15643..15838TCONS_00066939-exon-scaffold_462-1491911889:15643..15838Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1491911889:15478..15554TCONS_00066939-exon-scaffold_462-1491911889:15478..15554Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1491911889:12074..12384TCONS_00066939-exon-scaffold_462-1491911889:12074..12384Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1491911889:10829..10861TCONS_00066939-exon-scaffold_462-1491911889:10829..10861Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1491911889:10480..10575TCONS_00066939-exon-scaffold_462-1491911889:10480..10575Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1491911889:7620..7742TCONS_00066939-exon-scaffold_462-1491911889:7620..7742Clytia hemisphaericaexon
TCONS_00066939-exon-scaffold_462-1491911889:7179..7484TCONS_00066939-exon-scaffold_462-1491911889:7179..7484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:7179..15838 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1525.72	1545.85	1600.93	1519.26	1040.91	830.791	1043.45	1092.8	1448.65	1069.28	1509.06	1648.25	2085.37	2038.38	1958.77	1827.2	1848.69	2110.31	1007.51	1109.86	1934.83	1866.06	1833.87	1763.79	1507.22	1667.4	1854.17	1957.89	1101.8	1187.34
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002715Nas_poly-pep-assoc_cplx_dom
IPR016641EGD2/NACA
Vocabulary: Cellular Component
TermDefinition
GO:0005854nascent polypeptide-associated complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005854 nascent polypeptide-associated complex
Blast
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BLAST of TCONS_00066939 vs. Swiss-Prot (Human)
Match: NACA (Nascent polypeptide-associated complex subunit alpha OS=Homo sapiens GN=NACA PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.744e-57
Identity = 114/157 (72.61%), Postives = 128/157 (81.53%), Query Frame = 3 
Query:  378 IQEEPVSKSKQSRSEKKARKAIQRLGLKQVTGVTRVTIRKTKNILFVIKKPDVYKSPTGDTYIVFGEAKIEDLSQQAQVQAAEKFKEPEPVNPAVSDTKXXXXXXXXXXXXXXXXXXXXXXXIELVIQQSNVSRKKAIKALKKNDGDIVNAIMELTM 848
            I EEPVSK+KQSRSEKKARKA+ +LGL+QVTGVTRVTIRK+KNILFVI KPDVYKSP  DTYIVFGEAKIEDLSQQAQ+ AAEKFK        + +        EES++EEVDETGVE KDIELV+ Q+NVSR KA++ALK N  DIVNAIMELTM
Sbjct:   59 IDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM 215
The following BLAST results are available for this feature:
BLAST of TCONS_00066939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NACA2.744e-5772.61Nascent polypeptide-associated complex subunit alp... [more]
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