TCONS_00067005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067005
Unique NameTCONS_00067005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1098

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067005 ID=TCONS_00067005|Name=TCONS_00067005|organism=Clytia hemisphaerica|type=transcript|length=1098bp
aataaattaaaaaattaaatcttgaaatcaaaatgaaagCTTTTTATCTC
GTTGTTGCTCTAATTTACATTGAATCTCTTTGCATGGAAAACGATGCTGC
ACCTTCACCCAAAGAACAATACAACATACAAACAGCTGAAATTCTCAATA
TAGGTCAAGGGAATTGTCGACATTCACTTTGCGATGACCGAACGAGTGGA
ATACATAGATTTGGCAGTATATTCATGTTTGAATGTGAGAAAAAGGGTGT
GGCAAAAAGAtgtttcaaatgtaaacattgtccaAAAGGAGGCTTGATCA
AGTTGTATGATCATGGCAAGACGCCACTGTGTGAAATCAAAGTATAAGAT
TCTGCTGGAACCCTATAGTAAAGTCATCAACTAACAAATTCATGTACCCA
AGCTACTTTTATAGAGGTATGCGGTTAAGGCTACTGAAACCCTTGAAGTA
ATGATTGATGGAGGCTTTCTGAGCATGACGAATTTATAAAGAAGAGACAT
TTTGGAAGGCTTGATTTANTATTTTTATTAACTGTCATTTTCAATCGTTT
GTTTACGGGCGTTCCAAAAAGTAAACATCCTCCAGCCTTCTGTAATATAC
ATCCTTGGAATATTTAAGTCTTTTTCACAGAaaatagaacattttttttt
tagcaCTATGAAACTCCACATTCCAAACATCcttactactttaatgggat
aaattttcgcggggatcaaatttcgcggttgagactatccgcgaaattaa
aaaatttcgcggggacttaatttcgcgggttgcactattgggtggcaata
ttttcacgattttgtgacttttactctCAGaacatgcatgttggttgttg
aaatacacattatttgcgcctctttgatgcaagtaaccattcaaatagta
tttatttgacatattttgagttttgtttagaaatatttcgcggatgaggc
ccttccaaattcccattgggacttaatttcgcggatgacacccaaatccg
tgaaatttaatccccgcgaaagtttatcccattaaagtagaagcagtttt
tttatttcaaaacatgAAATTTAACTCTGTAAGAAATATTTGTAGGAC
Run BLAST on NCBI

protein sequence of TCONS_00067005-protein

>TCONS_00067005-protein ID=TCONS_00067005-protein|Name=TCONS_00067005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MKAFYLVVALIYIESLCMENDAAPSPKEQYNIQTAEILNIGQGNCRHSLC
DDRTSGIHRFGSIFMFECEKKGVAKRCFKCKHCPKGGLIKLYDHGKTPLC
EIKV
Run BLAST on NCBI

transcript from alignment at scaffold_462:807340..808546-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067005 ID=TCONS_00067005|Name=TCONS_00067005|organism=Clytia hemisphaerica|type=transcript|length=1207bp|location=Sequence derived from alignment at scaffold_462:807340..808546- (Clytia hemisphaerica)
AATAAATTAAAAAATTAAATCTTGAAATCAAAATGAAAGCTTTTTATCTC GTTGTTGCTCTAATTTACATTGGTAAGAAGGAATTACATTTTCTACTACA TCTGTCATTTTTCACCTAAGACTGTAAGAAAGAGAACTAGTCTGGAGTTT AGGTATAATATTTCGATTTTCTAACTTTCAGAATCTCTTTGCATGGAAAA CGATGCTGCACCTTCACCCAAAGAACAATACAACATACAAACAGCTGAAA TTCTCAATATAGGTCAAGGGAATTGTCGACATTCACTTTGCGATGACCGA ACGAGTGGAATACATAGATTTGGCAGTATATTCATGTTTGAATGTGAGAA AAAGGGTGTGGCAAAAAGATGTTTCAAATGTAAACATTGTCCAAAAGGAG GCTTGATCAAGTTGTATGATCATGGCAAGACGCCACTGTGTGAAATCAAA GTATAAGATTCTGCTGGAACCCTATAGTAAAGTCATCAACTAACAAATTC ATGTACCCAAGCTACTTTTATAGAGGTATGCGGTTAAGGCTACTGAAACC CTTGAAGTAATGATTGATGGAGGCTTTCTGAGCATGACGAATTTATAAAG AAGAGACATTTTGGAAGGCTTGATTTANTATTTTTATTAACTGTCATTTT CAATCGTTTGTTTACGGGCGTTCCAAAAAGTAAACATCCTCCAGCCTTCT GTAATATACATCCTTGGAATATTTAAGTCTTTTTCACAGAAAATAGAACA TTTTTTTTTTAGCACTATGAAACTCCACATTCCAAACATCCTTACTACTT TAATGGGATAAATTTTCGCGGGGATCAAATTTCGCGGTTGAGACTATCCG CGAAATTAAAAAATTTCGCGGGGACTTAATTTCGCGGGTTGCACTATTGG GTGGCAATATTTTCACGATTTTGTGACTTTTACTCTCAGAACATGCATGT TGGTTGTTGAAATACACATTATTTGCGCCTCTTTGATGCAAGTAACCATT CAAATAGTATTTATTTGACATATTTTGAGTTTTGTTTAGAAATATTTCGC GGATGAGGCCCTTCCAAATTCCCATTGGGACTTAATTTCGCGGATGACAC CCAAATCCGTGAAATTTAATCCCCGCGAAAGTTTATCCCATTAAAGTAGA AGCAGTTTTTTTATTTCAAAACATGAAATTTAACTCTGTAAGAAATATTT GTAGGAC

Coding sequence (CDS) from alignment at scaffold_462:807340..808546-

>TCONS_00067005 ID=TCONS_00067005|Name=TCONS_00067005|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_462:807340..808546- (Clytia hemisphaerica)
AATCTCTTTGCATGGAAAACGATGCTGCACCTTCACCCAAAGAACAATAC
AACATACAAACAGCTGAAATTCTCAATATAGGTCAAGGGAATTGTCGACA
TTCACTTTGCGATGACCGAACGAGTGGAATACATAGATTTGGCAGTATAT
TCATGTTTGAATGTGAGAAAAAGGGTGTGGCAAAAAGATGTTTCAAATGT
AAACATTGTCCAAAAGGAGGCTTGATCAAGTTGTATGATCATGGCAAGAC
GCCACTGTGTGAAATCAAAGTATAAATGAAAGCTTTTTATCTCGTTGTTG
CTCTAATTTACATTGAATCTCTTTGCATGGAAAACGATGCTGCACCTTCA
CCCAAAGAACAATACAACATACAAACAGCTGAAATTCTCAATATAGGTCA
AGGGAATTGTCGACATTCACTTTGCGATGACCGAACGAGTGGAATACATA
GATTTGGCAGTATATTCATGTTTGAATGTGAGAAAAAGGGTGTGGCAAAA
AGATGTTTCAAATGTAAACATTGTCCAAAAGGAGGCTTGATCAAGTTGTA
TGATCATGGCAAGACGCCACTGTGTGAAATCAAAGTATAAATGAAAGCTT
TTTATCTCGTTGTTGCTCTAATTTACATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041858XLOC_041858Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067005-proteinTCONS_00067005-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067005-exon-scaffold_462-1575043694:808475..808546TCONS_00067005-exon-scaffold_462-1575043694:808475..808546Clytia hemisphaericaexon
TCONS_00067005-exon-scaffold_462-1575043694:807340..808365TCONS_00067005-exon-scaffold_462-1575043694:807340..808365Clytia hemisphaericaexon
TCONS_00067005-exon-scaffold_462-1510915933:808475..808546TCONS_00067005-exon-scaffold_462-1510915933:808475..808546Clytia hemisphaericaexon
TCONS_00067005-exon-scaffold_462-1510915933:807340..808365TCONS_00067005-exon-scaffold_462-1510915933:807340..808365Clytia hemisphaericaexon
TCONS_00067005-exon-scaffold_462-1491911889:808475..808546TCONS_00067005-exon-scaffold_462-1491911889:808475..808546Clytia hemisphaericaexon
TCONS_00067005-exon-scaffold_462-1491911889:807340..808365TCONS_00067005-exon-scaffold_462-1491911889:807340..808365Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:807340..808546 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.122127 0.161361 0.26543 0.356912 0.550653 0.735692 0.271026 0.719621 0.688123 0.510768 0.540302 0.420123 1.70124 1.09112 13.0241 1.62882 0.303123 0.342005 2.47977 2.39708 0.886053 0.764901 0.269331 0.479332 0.482124 0.796284 18.7839 9.19683 0.047499 0.0930804
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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