|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067005 ID=TCONS_00067005|Name=TCONS_00067005|organism=Clytia hemisphaerica|type=transcript|length=1098bp
aataaattaaaaaattaaatcttgaaatcaaaatgaaagCTTTTTATCTC
GTTGTTGCTCTAATTTACATTGAATCTCTTTGCATGGAAAACGATGCTGC
ACCTTCACCCAAAGAACAATACAACATACAAACAGCTGAAATTCTCAATA
TAGGTCAAGGGAATTGTCGACATTCACTTTGCGATGACCGAACGAGTGGA
ATACATAGATTTGGCAGTATATTCATGTTTGAATGTGAGAAAAAGGGTGT
GGCAAAAAGAtgtttcaaatgtaaacattgtccaAAAGGAGGCTTGATCA
AGTTGTATGATCATGGCAAGACGCCACTGTGTGAAATCAAAGTATAAGAT
TCTGCTGGAACCCTATAGTAAAGTCATCAACTAACAAATTCATGTACCCA
AGCTACTTTTATAGAGGTATGCGGTTAAGGCTACTGAAACCCTTGAAGTA
ATGATTGATGGAGGCTTTCTGAGCATGACGAATTTATAAAGAAGAGACAT
TTTGGAAGGCTTGATTTANTATTTTTATTAACTGTCATTTTCAATCGTTT
GTTTACGGGCGTTCCAAAAAGTAAACATCCTCCAGCCTTCTGTAATATAC
ATCCTTGGAATATTTAAGTCTTTTTCACAGAaaatagaacattttttttt
tagcaCTATGAAACTCCACATTCCAAACATCcttactactttaatgggat
aaattttcgcggggatcaaatttcgcggttgagactatccgcgaaattaa
aaaatttcgcggggacttaatttcgcgggttgcactattgggtggcaata
ttttcacgattttgtgacttttactctCAGaacatgcatgttggttgttg
aaatacacattatttgcgcctctttgatgcaagtaaccattcaaatagta
tttatttgacatattttgagttttgtttagaaatatttcgcggatgaggc
ccttccaaattcccattgggacttaatttcgcggatgacacccaaatccg
tgaaatttaatccccgcgaaagtttatcccattaaagtagaagcagtttt
tttatttcaaaacatgAAATTTAACTCTGTAAGAAATATTTGTAGGAC Run BLAST on NCBI protein sequence of TCONS_00067005-protein >TCONS_00067005-protein ID=TCONS_00067005-protein|Name=TCONS_00067005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MKAFYLVVALIYIESLCMENDAAPSPKEQYNIQTAEILNIGQGNCRHSLC
DDRTSGIHRFGSIFMFECEKKGVAKRCFKCKHCPKGGLIKLYDHGKTPLC
EIKV Run BLAST on NCBI transcript from alignment at scaffold_462:807340..808546- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067005 ID=TCONS_00067005|Name=TCONS_00067005|organism=Clytia hemisphaerica|type=transcript|length=1207bp|location=Sequence derived from alignment at scaffold_462:807340..808546- (Clytia hemisphaerica)
AATAAATTAAAAAATTAAATCTTGAAATCAAAATGAAAGCTTTTTATCTC
GTTGTTGCTCTAATTTACATTGGTAAGAAGGAATTACATTTTCTACTACA
TCTGTCATTTTTCACCTAAGACTGTAAGAAAGAGAACTAGTCTGGAGTTT
AGGTATAATATTTCGATTTTCTAACTTTCAGAATCTCTTTGCATGGAAAA
CGATGCTGCACCTTCACCCAAAGAACAATACAACATACAAACAGCTGAAA
TTCTCAATATAGGTCAAGGGAATTGTCGACATTCACTTTGCGATGACCGA
ACGAGTGGAATACATAGATTTGGCAGTATATTCATGTTTGAATGTGAGAA
AAAGGGTGTGGCAAAAAGATGTTTCAAATGTAAACATTGTCCAAAAGGAG
GCTTGATCAAGTTGTATGATCATGGCAAGACGCCACTGTGTGAAATCAAA
GTATAAGATTCTGCTGGAACCCTATAGTAAAGTCATCAACTAACAAATTC
ATGTACCCAAGCTACTTTTATAGAGGTATGCGGTTAAGGCTACTGAAACC
CTTGAAGTAATGATTGATGGAGGCTTTCTGAGCATGACGAATTTATAAAG
AAGAGACATTTTGGAAGGCTTGATTTANTATTTTTATTAACTGTCATTTT
CAATCGTTTGTTTACGGGCGTTCCAAAAAGTAAACATCCTCCAGCCTTCT
GTAATATACATCCTTGGAATATTTAAGTCTTTTTCACAGAAAATAGAACA
TTTTTTTTTTAGCACTATGAAACTCCACATTCCAAACATCCTTACTACTT
TAATGGGATAAATTTTCGCGGGGATCAAATTTCGCGGTTGAGACTATCCG
CGAAATTAAAAAATTTCGCGGGGACTTAATTTCGCGGGTTGCACTATTGG
GTGGCAATATTTTCACGATTTTGTGACTTTTACTCTCAGAACATGCATGT
TGGTTGTTGAAATACACATTATTTGCGCCTCTTTGATGCAAGTAACCATT
CAAATAGTATTTATTTGACATATTTTGAGTTTTGTTTAGAAATATTTCGC
GGATGAGGCCCTTCCAAATTCCCATTGGGACTTAATTTCGCGGATGACAC
CCAAATCCGTGAAATTTAATCCCCGCGAAAGTTTATCCCATTAAAGTAGA
AGCAGTTTTTTTATTTCAAAACATGAAATTTAACTCTGTAAGAAATATTT
GTAGGAC Coding sequence (CDS) from alignment at scaffold_462:807340..808546- >TCONS_00067005 ID=TCONS_00067005|Name=TCONS_00067005|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_462:807340..808546- (Clytia hemisphaerica)
AATCTCTTTGCATGGAAAACGATGCTGCACCTTCACCCAAAGAACAATAC
AACATACAAACAGCTGAAATTCTCAATATAGGTCAAGGGAATTGTCGACA
TTCACTTTGCGATGACCGAACGAGTGGAATACATAGATTTGGCAGTATAT
TCATGTTTGAATGTGAGAAAAAGGGTGTGGCAAAAAGATGTTTCAAATGT
AAACATTGTCCAAAAGGAGGCTTGATCAAGTTGTATGATCATGGCAAGAC
GCCACTGTGTGAAATCAAAGTATAAATGAAAGCTTTTTATCTCGTTGTTG
CTCTAATTTACATTGAATCTCTTTGCATGGAAAACGATGCTGCACCTTCA
CCCAAAGAACAATACAACATACAAACAGCTGAAATTCTCAATATAGGTCA
AGGGAATTGTCGACATTCACTTTGCGATGACCGAACGAGTGGAATACATA
GATTTGGCAGTATATTCATGTTTGAATGTGAGAAAAAGGGTGTGGCAAAA
AGATGTTTCAAATGTAAACATTGTCCAAAAGGAGGCTTGATCAAGTTGTA
TGATCATGGCAAGACGCCACTGTGTGAAATCAAAGTATAAATGAAAGCTT
TTTATCTCGTTGTTGCTCTAATTTACATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067005-exon-scaffold_462-1575043694:808475..808546 | TCONS_00067005-exon-scaffold_462-1575043694:808475..808546 | Clytia hemisphaerica | exon |
| TCONS_00067005-exon-scaffold_462-1575043694:807340..808365 | TCONS_00067005-exon-scaffold_462-1575043694:807340..808365 | Clytia hemisphaerica | exon |
| TCONS_00067005-exon-scaffold_462-1510915933:808475..808546 | TCONS_00067005-exon-scaffold_462-1510915933:808475..808546 | Clytia hemisphaerica | exon |
| TCONS_00067005-exon-scaffold_462-1510915933:807340..808365 | TCONS_00067005-exon-scaffold_462-1510915933:807340..808365 | Clytia hemisphaerica | exon |
| TCONS_00067005-exon-scaffold_462-1491911889:808475..808546 | TCONS_00067005-exon-scaffold_462-1491911889:808475..808546 | Clytia hemisphaerica | exon |
| TCONS_00067005-exon-scaffold_462-1491911889:807340..808365 | TCONS_00067005-exon-scaffold_462-1491911889:807340..808365 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:807340..808546 - |
Blast
The following BLAST results are available for this feature:
|
