TCONS_00067008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067008
Unique NameTCONS_00067008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3069

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067008 ID=TCONS_00067008|Name=TCONS_00067008|organism=Clytia hemisphaerica|type=transcript|length=3069bp
gctgtatcaaaattttgacgaaaatcttttatttttgaatacaattttat
cgttttgttttgatttttaagagAATTGACATTTAATCGGAGAAAAGGGA
GCATATACATTTTCCAGCATGAAAGCTCTTCACGTGGGAGTGATGTTACT
CCTACTTGTGGCTTTGATCGATTGTCGGGCTATCAAAAAAGgtCATAAAG
GCAAAAAGAAAGAAGTCACGCCAGATACATCTTCAGAGGACCAAAGTAAA
CGACATGTCCAAAGTTATAATGATCCTTTAGCTGAGCAAAACCCTGATGA
AGATGAAGCTCATCCAATGCCACAACCAGGCCATGTTCCACAAAACTTAA
ATGGGATTATCCAAAAATATAAACCAAAGAAAGTTCAAGAtgataagaaa
aacaaaaacaaaaacaaacaagacAATAAGCAGTCATATGCTGCAGGAAC
TTCCGATTCAGAAAATTCAGAGGAAGCACCTGATGAAGCTGAGGCACCAC
CACCAGGAGGTGCCCCACCCGCAGGTGGTAACCCACCACCTCCAGGAGGT
GCTCAGCCACCTCCTGCTGGAGGGCAGCCCACAACTACTCCAGCACCACC
TCCTGCTGGTGATGATGATGACAGTGATGATAGCGATGATGATGCTCAGC
CACCTGAACAAAAACCAGCCCCAGGAGGCGGCTCTCCTCCTCCTCCAGGT
GGTGCTCCTCCACCACCAGGAGGTGCCCCACCCCCTCCAGGCGGTGCCCC
TCCACCACCAGGTGGTGTCCCACCCCCTCCAGGTGGTGCTCCCCCACCAC
CAGCAGGAAAGAAACCACCAACAGAAGCCAAATCTGACGGAGATGATCAA
GAAGATTTGAAAGCCTTACTAGATGAAAGTATTGgaTCATCTAGTGGACC
CTCTCCATCTGGAGGTGCTCCCCCACCCGGTGGTGCTCCTCCTCCTCCAG
GCGGTGCCCCTCCACCCCCAGGCGGTGCCCCTCCACCAGGTGGTGCTCCT
CCTCCAGGCGGTGCCCCTCCACCACCAGGTGGCGCCCCTCCCACTGAGGC
TAAACCAGATGAGGCTGCTGGTGCTCCTCCCCCTCCTGGTGGTGCCGGTG
GCGCTCCTGGAGCAGCAGGTGGCAAAGGTGGAGACTGCACTGGTTGCGAA
AACCCATACTGCTGTGCCGAACCCTTTGGAGCTAGCTCAACTGTCATTCA
TTTCCCAGCACCGCCATGTGCATGTGCTCCCCCACCACCACCTTGTATGG
CAATGCCATGTCCACCACCCCCTCCTCCATGCCCTNNNNNNNNNNNNNNN
NNNNNNACCATGTCCTGCACCTTGTCCAGTAGCATGTGCacctccaccac
caccacctTGTGCACCAGCCTGTATGCCCCCAGCTTGTGGACCAACCTGC
AGTCGCGATTGTTGTGAGTGGGATCAAGTCGTACCATCAGGTGCATTGGC
AGGGGCCCTCGCTAACTATGCTAAAGATCATGGCAAATAAATTGGACGAA
ACAGACATTCTTTAATATTCCTATCCTAAACACAATGTACATTAATATTT
TCCTTTCACACTTGCATGTTTATATTTTatgacaaagttttttttctgtt
tataaTTTGACCGAAATGAATAATTTTAGAGACGAAACCAAAAAAGGTTA
ATGGTGATAGTGGGTGCAGTGGTGTGTTTTCTACTTTCGTATAATTTGTC
TATGATCGCTAACTGAATCACAATGACACACAAACACACACGCTTAAACC
AAGCAAATGTTTATTTTGTCATTTAGGTTTACCACTGCCTCCACTATCAC
CATTTCCATGCAGTACTTGTACTATAATATGTTTACCTGGCTGTGATACA
ACTTGTTGTCATGGGGgtaacaagaaaaataaaactttcaatGCTAAACT
ACATCATCGTAAAAAGACACGGCATCATGATAGAAAATCTCATAAAGGAT
ATATTTCCGATGATGATAAAAGACATAACGATAATAACAATATGGTTGCC
CCTACCATGCCTTCATTGCCTTTATCCAGATTTGTAGTGGCCCCAACAAT
GCCTGCACCACCGACTGTATGTTGTGACAAAGACCATCCTGTAATCTTGA
ACTGTGATATCCCACCATGCCAACCGACCAATTGCATCTATTGTTATAAT
CCTGGTTCACCGGTCGTCGGGAATAGCCTAATTATACCGAATGCAGGCTG
AAAGAGGATAATTTGTACATGGGATATTTACGTAGAGGAGCTGATGTATA
TTCATGTATAACTAACATTATAACTGATGCATGTCCATCATATCCAACCT
TATGTCGTCATGGAGACGAACCGTTCGTTCTGAGCATGCGCACATGAACG
TGAATTGTGACTCTATGGATAACTATCTACGGATGAACTAACTACAACAT
AATTATCGTATATCATAGTTTTGTTATCGAATCTTTTGCTAAATGGCCAG
TTAGTTCTATAGTTGGCGCATATATTACTTTTAAGCAAAGTAGGGCCTAG
TTGGTGACATAAAGGCTTTTCTTTAGAACACGTTGACtacacagatatct
gtaaagcccgaagggctagataggcaactttaagctttctccacagcaaa
aaaaagtgaagcaaaaatttgactttttaaatttcgtgccgatggatagg
atctagcattttaattgtttttggagcgcgagatcaaaaaagtaggcggc
aaacgctatttcacatctctcaaaccggtggaATTGCATATTTTactcac
gtgactttggtaggaaatccttccaaatctaggcttcacttttcgataaa
agctgcgaatctagcccttcgggctttacagatctgtggttgACTActga
ttttttattgaaaaattgacaaGAAATCTTTAAGAACAAGCTTTGTACTT
AAGGAAAGCCTTCTAGTTAAAGACTTTGCTCAGCGAAAATTTAGTATAGT
TTTGTTACTAGATAATGACACTTTTAGGACAATTTTCATATTTATAAAAG
ATACAAATATAAGGCATTTACACTTATGtcttgaatgaaaatttaacata
atttttggataaaatattc
Run BLAST on NCBI

transcript from alignment at scaffold_462:878768..884817-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067008 ID=TCONS_00067008|Name=TCONS_00067008|organism=Clytia hemisphaerica|type=transcript|length=6050bp|location=Sequence derived from alignment at scaffold_462:878768..884817- (Clytia hemisphaerica)
GCTGTATCAAAATTTTGACGAAAATCTTTTATTTTTGAATACAATTTTAT CGTTTTGTTTTGATTTTTAAGAGAATTGACATTTAATCGGAGAAAAGGGA GCATATACATTTTCCAGGTGAGTAAACCATTTACTACCAATTTGATAGAT TTTGTTCTTTTGATAAATTGGACTCGTATTTTAATCATTATTTGGCTTTG CTTGATTGAAAAAGTGATTTTTTCAGGAGCATCTTAAGAAATATTATTGC AATCGTTAAAAGATAATGATATGTTTTGTTTGTTTAATGATATTTTGAAT TGGATATTTGCTATTGAGCACCTGGCTGACTGCTTTCTCGCTATTCAAAT TGTTACAAATTAAAAAAAGAATCATTAGAAACCCCATAACTCGAACACGC AACCTAAATATTTTATTTGAGTGATACACGGTGAATCTACCATTGAGTTT AAAGCCCCGAAGAAATTAAAATTGAAACTTTTGGATGGGAAATGAAGTCA CTTAGTGTCTATCTGAAACGTGTAACCTGCGTGGTTTTCACATAAACGCC AGAGTGAAAGAAATATTCATCGCTAGATTTCGAAAAATACGCCACGTGAA AACAAAGAAAGCACTAGATTCAATCCGTTATTCTGAATACGCAAATCTTT AATGCTTTACTTTTTCTTGCTTGAGAAGGGCTGAAGATTTTTCTTAGAGC CCTTTGAGCCTTAAACTCAATGTACCCATTGTACTCTGTCACATATTCTT GTCGCTATTAAATTTTAATTGTCTTTCTTTCTTTTCATTCAGCATGAAAG CTCTTCACGTGGGAGTGATGTTACTCCTACTTGTGGCTTTGATCGATTGT CGGGCTATCAAAAAAGGTATACTTTTATTCAATGTTTTTTACCTAGCTAA GGAATCTTCCTGAATTTTCAATGCAATGAAAGTAGAAAGAGCATCCCTTC TCGGTTACCTTTTCATGTTGTAATGATCCTTCTTTGTTATGTTTTTCGCT AAATTCGTCTTCACTGTCGATGCATAAAATTTCATTTACCTTATGGGGAG GAAAATAGTCATGATTTATCTATTTATTTCGGTCTCGATTATTTGGCCCC GATTCTTTGGCGCCTTTTCATAAATTATCTTGAGTGCAACGACTGCCTCG TTTTGAAACCATTGTCAAGGTGACTAAATTCCTTGGGTCTTCGAGTGCTA CTTTCTATAAGTAGAGTAAACTTCTTATGAACTCCTCTGGGAATCAATTA CCACAGTAATATTTTGAAAACGAGGAGTTGCTAGTGACGTAATTTATGGA AAGGTTTTATAAAAGTAAATATTTTCTGTGTTTGCATGATTTTAAGACAA ATTCTACAGCTTGATTTTGTTTTGGCTAGGTGTTATTTTCTTCTCTCCTA ATACTGTATATGATTATATGTACGGCCTTGCCCCCCATTCTTTGCTTACA ATATATGCACGACCTAATCATCCAAGTTAAAACTGCAATGCATGAGACAG TATCAAATTAAAATAGTCTAGAGTAATCTTAGACCAATTCTAGTCAGGCG TGATGTGTGAACTTAAGGGATTTTTCGAAATAAAGAATAAAGCAATTTCG GAACAAATTTTGAAAAAAAACTTTTTTGAAATTTTTGAATAATTCCCTTT ACTTTTTTAGGGAAAGATCACAAAAAGTCTTCAAAGTTATCACATCATGC TCGTAAATTTGCTACCGAAGCCTCGAAAAGTATTTATCAGCATGCGCTAG ACGAAACTAAAAAAGACTTGGGAGAGGCGATAGATAGTGCAGTTCAAGCA TATACTGAACAGACTATTGGAGGTAGGATACATACAAGGCTAACAAAGTG AACTTCGCCATATTTTAGAATACCTGCGACTCACAACCCCAACCCCCCGG TCACGAGTCCCTGATGTAACTCACTGGAAATAAATGGAACCTTTTCCCAA TTATTACAATAGATAACATCCTGTTCAAAGAATGAATGTTCTATCCCATT TCATAATGTGCTTCTCATTGTAAATCCACTCTCCATACATTTAACGAGAT GTACATACCCCTAGACTCGTCATTTTTGAGCATTTTCACAAAGACAATTT TTACATAGAGATGACCTAGAATAGATTTGCATGTCTTACAACAACAACAA CACATCTACTGTAGAAAAATGCCAAAAATAACTTGTATCGCGCATGTATC GTCATTTAACCAAACGCATTATAAACAGGATTTAGCTGAACAATCTAAAA AAGCAAACACTTTCTTACACCATCAACTCCATTATTCGACCAAACTTCTT CATTTTTCAAAGGTCATAAAGGCAAAAAGAAAGAAGTCACGCCAGATACA TCTTCAGAGGACCAAAGTAAACGACATGTCCAAAGTTATAATGATCCTTT AGCTGAGCAAAACCCTGATGAAGATGAAGCTCATCCAATGCCACAACCAG GCCATGTTCCACAAAACTTAAATGGGATTATCCAAAAATATAAACCAAAG AAAGTTCAAGATGATAAGAAAAACAAAAACAAAAACAAACAAGACAATAA GCAGTCATATGCTGCAGGAACTTGTAAGTTAATAAAATTCCTTTCCTTCA GCAGTGTAACCCTTTCATAAATTTAAGTTTGGTTAAACCCTTCTTAAACT AATTTTTCAAGATTGTGCTTTTCTCAGATGCTTTTTTATACTTTGAGATA GTTCTGTTAGTTTTAAACTTCGTAGATTAAAGTGTTACGATTGATGAAAT TGAGATTCAGTGTAGTTTTGACATCTTTCATTCCCTTTAGCCGATTCAGA AAATTCAGAGGAAGCACCTGATGAAGCTGAGGCACCACCACCAGGAGGTG CCCCACCCGCAGGTGGTAACCCACCACCTCCAGGAGGTGCTCAGCCACCT CCTGCTGGAGGGCAGCCCACAACTACTCCAGCACCACCTCCTGCTGGTGA TGATGATGACAGTGATGATAGCGATGATGATGCTCAGCCACCTGAACAAA AACCAGCCCCAGGAGGCGGCTCTCCTCCTCCTCCAGGTGGTGCTCCTCCA CCACCAGGAGGTGCCCCACCCCCTCCAGGCGGTGCCCCTCCACCACCAGG TGGTGTCCCACCCCCTCCAGGTGGTGCTCCCCCACCACCAGCAGGAAAGA AACCACCAACAGAAGCCAAATCTGACGGAGATGATCAAGAAGATTTGAAA GCCTTACTAGATGAAAGTATTGGTAAGATGTCCAGCCATTCACAACGAAT TCTAAAATAAAGACTGGAATGGAAAAGGAAACGATCTAGAACGTTGAAGA TCCGAAAAACCGGATTTTCTTCAAGGTTGAAGAGATTCTTTCAGATGTCA AATAATGGCTGCTGCAGATATGGAAATTTGGAAACCTCGTTAAAAAATCA GATTCCCAATTCCAGTCTTAATTTTGGAGTTCGTTGATCAAATCAGTTAA ATCTAAAAGTTATTCAAAAATAAAATCTCGATGCATCAAAAGCTAATAGA TTCTAATTAGTCACTTTTGAGTATCACTTCAATATTCAAATAGGTCAAAA AACCTCCTTTTCTTTCTTTTCATCTATTTAGGAAACTTAGTCAAAGCAAA TCAAGCTGTAGAAACACTCTTATCTGCCAGCAGTGGAGGTAAGAGCTTTT TACCGTTTTCTTCTCATGCCAATACTGCACCCACTAAACCAGGAATTTCC TCATCTTATCTTTGTAATTATTTTTACTTTTAGGATCATCTAGTGGACCC TCTCCATCTGGAGGTGCTCCCCCACCCGGTGGTGCTCCTCCTCCTCCAGG CGGTGCCCCTCCACCCCCAGGTGGCGTTCCTCCTCCAGGCGGTGCCCCTC CTCCAGGCGGTGCTCCTCCTCCAGGCGGTGCCCCTCCTCCAGGTGGTGCC CCTCCACCCCCAGGTGGTGCCCCTCCACCCCCAGGCGGTGCCCCTCCTCC AGGCGGTGCCCCTCCACCAGGTGGTGCTCCTCCTCCAGGCGGTGCCCCTC CACCACCAGGTGGCGCCCCTCCCACTGAGGCTAAACCAGATGAGGCTGCT GGTGCTCCTCCCCCTCCTGGTGGTGCCGGTGGCGCTCCTGGAGCAGCAGG TGGCAAAGGTGGAGACTGCACTGGTTGCGAAAACCCATACTGCTGTGCCG AACCCTTTGGAGCTAGCTCAACTGTCATTCATTTCCCAGCACCGCCATGT GCATGTGCTCCCCCACCACCACCTTGTATGGCAATGCCATGTCCACCACC CCCTCCTCCATGCCCTNNNNNNNNNNNNNNNNNNNNNACCATGTCCTGCA CCTTGTCCAGTAGCATGTGCACCTCCACCACCACCACCTTGTGCACCAGC CTGTATGCCCCCAGCTTGTGGACCAACCTGCAGTCGCGATTGTTGTGAGT GGGATCAAGTCGTACCATCAGGTGCATTGGCAGGGGCCCTCGCTAACTAT GCTAAAGATCATGGCAAATAAATTGGACGAAACAGACATTCTTTAATATT CCTATCCTAAACACAATGTACATTAATATTTTCCTTTCACACTTGCATGT TTATATTTTATGACAAAGTTTTTTTTCTGTTTATAATTTGACCGAAATGA ATAATTTTAGAGACGAAACCAAAAAAGGTTAATGGTGATAGTGGGTGCAG TGGTGTGTTTTCTACTTTCGTATAATTTGTCTATGATCGCTAACTGAATC ACAATGACACACAAACACACACGCTTAAACCAAGCAAATGTTTATTTTGT CATTTAGGTTTACCACTGCCTCCACTATCACCATTTCCATGCAGTACTTG TACTATAATATGTTTACCTGGCTGTGATACAACTTGTTGTCATGGGGGTA ACAAGAAAAATAAAACTTTCAATGCTAAACTACATCATCGTAAAAAGACA CGGCATCATGATAGAAAATCTCATAAAGGATATATTTCCGATGATGATAA AAGACATAACGATAATAACAATATGGTTGCCCCTACCATGCCTTCATTGC CTTTATCCAGATTTGTAGTGGCCCCAACAATGCCTGCACCACCGACTGTA TGTTGTGACAAAGACCATCCTGTAATCTTGAACTGTGATATCCCACCATG CCAACCGACCAATTGCATCTATTGTTATAATCCTGGTTCACCGGTCGTCG GGAATAGCCTAATTATACCGAATGCAGGCTGAAAGAGGATAATTTGTACA TGGGATATTTACGTAGAGGAGCTGATGTATATTCATGTATAACTAACATT ATAACTGATGCATGTCCATCATATCCAACCTTATGTCGTCATGGAGACGA ACCGTTCGTTCTGAGCATGCGCACATGAACGTGAATTGTGACTCTATGGA TAACTATCTACGGATGAACTAACTACAACATAATTATCGTATATCATAGT TTTGTTATCGAATCTTTTGCTAAATGGCCAGTTAGTTCTATAGTTGGCGC ATATATTACTTTTAAGCAAAGTAGGGCCTAGTTGGTGACATAAAGGCTTT TCTTTAGAACACGTTGACTACACAGATATCTGTAAAGCCCGAAGGGCTAG ATAGGCAACTTTAAGCTTTCTCCACAGCAAAAAAAAGTGAAGCAAAAATT TGACTTTTTAAATTTCGTGCCGATGGATAGGATCTAGCATTTTAATTGTT TTTGGAGCGCGAGATCAAAAAAGTAGGCGGCAAACGCTATTTCACATCTC TCAAACCGGTGGAATTGCATATTTTACTCACGTGACTTTGGTAGGAAATC CTTCCAAATCTAGGCTTCACTTTTCGATAAAAGCTGCGAATCTAGCCCTT CGGGCTTTACAGATCTGTGGTTGACTACTGATTTTTTATTGAAAAATTGA CAAGAAATCTTTAAGAACAAGCTTTGTACTTAAGGAAAGCCTTCTAGTTA AAGACTTTGCTCAGCGAAAATTTAGTATAGTTTTGTTACTAGATAATGAC ACTTTTAGGACAATTTTCATATTTATAAAAGATACAAATATAAGGCATTT ACACTTATGTCTTGAATGAAAATTTAACATAATTTTTGGATAAAATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041859XLOC_041859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067008-exon-scaffold_462-1575043694:884701..884817TCONS_00067008-exon-scaffold_462-1575043694:884701..884817Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1575043694:883952..884025TCONS_00067008-exon-scaffold_462-1575043694:883952..884025Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1575043694:882245..882505TCONS_00067008-exon-scaffold_462-1575043694:882245..882505Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1575043694:881596..882027TCONS_00067008-exon-scaffold_462-1575043694:881596..882027Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1575043694:880998..881084TCONS_00067008-exon-scaffold_462-1575043694:880998..881084Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1575043694:878768..880865TCONS_00067008-exon-scaffold_462-1575043694:878768..880865Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1510915933:884701..884817TCONS_00067008-exon-scaffold_462-1510915933:884701..884817Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1510915933:883952..884025TCONS_00067008-exon-scaffold_462-1510915933:883952..884025Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1510915933:882245..882505TCONS_00067008-exon-scaffold_462-1510915933:882245..882505Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1510915933:881596..882027TCONS_00067008-exon-scaffold_462-1510915933:881596..882027Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1510915933:880998..881084TCONS_00067008-exon-scaffold_462-1510915933:880998..881084Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1510915933:878768..880865TCONS_00067008-exon-scaffold_462-1510915933:878768..880865Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1491911889:884701..884817TCONS_00067008-exon-scaffold_462-1491911889:884701..884817Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1491911889:883952..884025TCONS_00067008-exon-scaffold_462-1491911889:883952..884025Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1491911889:882245..882505TCONS_00067008-exon-scaffold_462-1491911889:882245..882505Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1491911889:881596..882027TCONS_00067008-exon-scaffold_462-1491911889:881596..882027Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1491911889:880998..881084TCONS_00067008-exon-scaffold_462-1491911889:880998..881084Clytia hemisphaericaexon
TCONS_00067008-exon-scaffold_462-1491911889:878768..880865TCONS_00067008-exon-scaffold_462-1491911889:878768..880865Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:878768..884817 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0259159 2.80652 20.7793 23.4889 1.96754 2.13178 13.5335 7.95626 10.9271 9.24454 8.40685 27.6924 14.2639 16.0066 0 0 9.05066 8.66405 6.7789 3.04614 1.77302 2.4851 1.4899 1.00567e-06 0 0.218972
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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