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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067008 ID=TCONS_00067008|Name=TCONS_00067008|organism=Clytia hemisphaerica|type=transcript|length=3069bp gctgtatcaaaattttgacgaaaatcttttatttttgaatacaattttat cgttttgttttgatttttaagagAATTGACATTTAATCGGAGAAAAGGGA GCATATACATTTTCCAGCATGAAAGCTCTTCACGTGGGAGTGATGTTACT CCTACTTGTGGCTTTGATCGATTGTCGGGCTATCAAAAAAGgtCATAAAG GCAAAAAGAAAGAAGTCACGCCAGATACATCTTCAGAGGACCAAAGTAAA CGACATGTCCAAAGTTATAATGATCCTTTAGCTGAGCAAAACCCTGATGA AGATGAAGCTCATCCAATGCCACAACCAGGCCATGTTCCACAAAACTTAA ATGGGATTATCCAAAAATATAAACCAAAGAAAGTTCAAGAtgataagaaa aacaaaaacaaaaacaaacaagacAATAAGCAGTCATATGCTGCAGGAAC TTCCGATTCAGAAAATTCAGAGGAAGCACCTGATGAAGCTGAGGCACCAC CACCAGGAGGTGCCCCACCCGCAGGTGGTAACCCACCACCTCCAGGAGGT GCTCAGCCACCTCCTGCTGGAGGGCAGCCCACAACTACTCCAGCACCACC TCCTGCTGGTGATGATGATGACAGTGATGATAGCGATGATGATGCTCAGC CACCTGAACAAAAACCAGCCCCAGGAGGCGGCTCTCCTCCTCCTCCAGGT GGTGCTCCTCCACCACCAGGAGGTGCCCCACCCCCTCCAGGCGGTGCCCC TCCACCACCAGGTGGTGTCCCACCCCCTCCAGGTGGTGCTCCCCCACCAC CAGCAGGAAAGAAACCACCAACAGAAGCCAAATCTGACGGAGATGATCAA GAAGATTTGAAAGCCTTACTAGATGAAAGTATTGgaTCATCTAGTGGACC CTCTCCATCTGGAGGTGCTCCCCCACCCGGTGGTGCTCCTCCTCCTCCAG GCGGTGCCCCTCCACCCCCAGGCGGTGCCCCTCCACCAGGTGGTGCTCCT CCTCCAGGCGGTGCCCCTCCACCACCAGGTGGCGCCCCTCCCACTGAGGC TAAACCAGATGAGGCTGCTGGTGCTCCTCCCCCTCCTGGTGGTGCCGGTG GCGCTCCTGGAGCAGCAGGTGGCAAAGGTGGAGACTGCACTGGTTGCGAA AACCCATACTGCTGTGCCGAACCCTTTGGAGCTAGCTCAACTGTCATTCA TTTCCCAGCACCGCCATGTGCATGTGCTCCCCCACCACCACCTTGTATGG CAATGCCATGTCCACCACCCCCTCCTCCATGCCCTNNNNNNNNNNNNNNN NNNNNNACCATGTCCTGCACCTTGTCCAGTAGCATGTGCacctccaccac caccacctTGTGCACCAGCCTGTATGCCCCCAGCTTGTGGACCAACCTGC AGTCGCGATTGTTGTGAGTGGGATCAAGTCGTACCATCAGGTGCATTGGC AGGGGCCCTCGCTAACTATGCTAAAGATCATGGCAAATAAATTGGACGAA ACAGACATTCTTTAATATTCCTATCCTAAACACAATGTACATTAATATTT TCCTTTCACACTTGCATGTTTATATTTTatgacaaagttttttttctgtt tataaTTTGACCGAAATGAATAATTTTAGAGACGAAACCAAAAAAGGTTA ATGGTGATAGTGGGTGCAGTGGTGTGTTTTCTACTTTCGTATAATTTGTC TATGATCGCTAACTGAATCACAATGACACACAAACACACACGCTTAAACC AAGCAAATGTTTATTTTGTCATTTAGGTTTACCACTGCCTCCACTATCAC CATTTCCATGCAGTACTTGTACTATAATATGTTTACCTGGCTGTGATACA ACTTGTTGTCATGGGGgtaacaagaaaaataaaactttcaatGCTAAACT ACATCATCGTAAAAAGACACGGCATCATGATAGAAAATCTCATAAAGGAT ATATTTCCGATGATGATAAAAGACATAACGATAATAACAATATGGTTGCC CCTACCATGCCTTCATTGCCTTTATCCAGATTTGTAGTGGCCCCAACAAT GCCTGCACCACCGACTGTATGTTGTGACAAAGACCATCCTGTAATCTTGA ACTGTGATATCCCACCATGCCAACCGACCAATTGCATCTATTGTTATAAT CCTGGTTCACCGGTCGTCGGGAATAGCCTAATTATACCGAATGCAGGCTG AAAGAGGATAATTTGTACATGGGATATTTACGTAGAGGAGCTGATGTATA TTCATGTATAACTAACATTATAACTGATGCATGTCCATCATATCCAACCT TATGTCGTCATGGAGACGAACCGTTCGTTCTGAGCATGCGCACATGAACG TGAATTGTGACTCTATGGATAACTATCTACGGATGAACTAACTACAACAT AATTATCGTATATCATAGTTTTGTTATCGAATCTTTTGCTAAATGGCCAG TTAGTTCTATAGTTGGCGCATATATTACTTTTAAGCAAAGTAGGGCCTAG TTGGTGACATAAAGGCTTTTCTTTAGAACACGTTGACtacacagatatct gtaaagcccgaagggctagataggcaactttaagctttctccacagcaaa aaaaagtgaagcaaaaatttgactttttaaatttcgtgccgatggatagg atctagcattttaattgtttttggagcgcgagatcaaaaaagtaggcggc aaacgctatttcacatctctcaaaccggtggaATTGCATATTTTactcac gtgactttggtaggaaatccttccaaatctaggcttcacttttcgataaa agctgcgaatctagcccttcgggctttacagatctgtggttgACTActga ttttttattgaaaaattgacaaGAAATCTTTAAGAACAAGCTTTGTACTT AAGGAAAGCCTTCTAGTTAAAGACTTTGCTCAGCGAAAATTTAGTATAGT TTTGTTACTAGATAATGACACTTTTAGGACAATTTTCATATTTATAAAAG ATACAAATATAAGGCATTTACACTTATGtcttgaatgaaaatttaacata atttttggataaaatattc Run BLAST on NCBI transcript from alignment at scaffold_462:878768..884817- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067008 ID=TCONS_00067008|Name=TCONS_00067008|organism=Clytia hemisphaerica|type=transcript|length=6050bp|location=Sequence derived from alignment at scaffold_462:878768..884817- (Clytia hemisphaerica) GCTGTATCAAAATTTTGACGAAAATCTTTTATTTTTGAATACAATTTTAT
CGTTTTGTTTTGATTTTTAAGAGAATTGACATTTAATCGGAGAAAAGGGA
GCATATACATTTTCCAGGTGAGTAAACCATTTACTACCAATTTGATAGAT
TTTGTTCTTTTGATAAATTGGACTCGTATTTTAATCATTATTTGGCTTTG
CTTGATTGAAAAAGTGATTTTTTCAGGAGCATCTTAAGAAATATTATTGC
AATCGTTAAAAGATAATGATATGTTTTGTTTGTTTAATGATATTTTGAAT
TGGATATTTGCTATTGAGCACCTGGCTGACTGCTTTCTCGCTATTCAAAT
TGTTACAAATTAAAAAAAGAATCATTAGAAACCCCATAACTCGAACACGC
AACCTAAATATTTTATTTGAGTGATACACGGTGAATCTACCATTGAGTTT
AAAGCCCCGAAGAAATTAAAATTGAAACTTTTGGATGGGAAATGAAGTCA
CTTAGTGTCTATCTGAAACGTGTAACCTGCGTGGTTTTCACATAAACGCC
AGAGTGAAAGAAATATTCATCGCTAGATTTCGAAAAATACGCCACGTGAA
AACAAAGAAAGCACTAGATTCAATCCGTTATTCTGAATACGCAAATCTTT
AATGCTTTACTTTTTCTTGCTTGAGAAGGGCTGAAGATTTTTCTTAGAGC
CCTTTGAGCCTTAAACTCAATGTACCCATTGTACTCTGTCACATATTCTT
GTCGCTATTAAATTTTAATTGTCTTTCTTTCTTTTCATTCAGCATGAAAG
CTCTTCACGTGGGAGTGATGTTACTCCTACTTGTGGCTTTGATCGATTGT
CGGGCTATCAAAAAAGGTATACTTTTATTCAATGTTTTTTACCTAGCTAA
GGAATCTTCCTGAATTTTCAATGCAATGAAAGTAGAAAGAGCATCCCTTC
TCGGTTACCTTTTCATGTTGTAATGATCCTTCTTTGTTATGTTTTTCGCT
AAATTCGTCTTCACTGTCGATGCATAAAATTTCATTTACCTTATGGGGAG
GAAAATAGTCATGATTTATCTATTTATTTCGGTCTCGATTATTTGGCCCC
GATTCTTTGGCGCCTTTTCATAAATTATCTTGAGTGCAACGACTGCCTCG
TTTTGAAACCATTGTCAAGGTGACTAAATTCCTTGGGTCTTCGAGTGCTA
CTTTCTATAAGTAGAGTAAACTTCTTATGAACTCCTCTGGGAATCAATTA
CCACAGTAATATTTTGAAAACGAGGAGTTGCTAGTGACGTAATTTATGGA
AAGGTTTTATAAAAGTAAATATTTTCTGTGTTTGCATGATTTTAAGACAA
ATTCTACAGCTTGATTTTGTTTTGGCTAGGTGTTATTTTCTTCTCTCCTA
ATACTGTATATGATTATATGTACGGCCTTGCCCCCCATTCTTTGCTTACA
ATATATGCACGACCTAATCATCCAAGTTAAAACTGCAATGCATGAGACAG
TATCAAATTAAAATAGTCTAGAGTAATCTTAGACCAATTCTAGTCAGGCG
TGATGTGTGAACTTAAGGGATTTTTCGAAATAAAGAATAAAGCAATTTCG
GAACAAATTTTGAAAAAAAACTTTTTTGAAATTTTTGAATAATTCCCTTT
ACTTTTTTAGGGAAAGATCACAAAAAGTCTTCAAAGTTATCACATCATGC
TCGTAAATTTGCTACCGAAGCCTCGAAAAGTATTTATCAGCATGCGCTAG
ACGAAACTAAAAAAGACTTGGGAGAGGCGATAGATAGTGCAGTTCAAGCA
TATACTGAACAGACTATTGGAGGTAGGATACATACAAGGCTAACAAAGTG
AACTTCGCCATATTTTAGAATACCTGCGACTCACAACCCCAACCCCCCGG
TCACGAGTCCCTGATGTAACTCACTGGAAATAAATGGAACCTTTTCCCAA
TTATTACAATAGATAACATCCTGTTCAAAGAATGAATGTTCTATCCCATT
TCATAATGTGCTTCTCATTGTAAATCCACTCTCCATACATTTAACGAGAT
GTACATACCCCTAGACTCGTCATTTTTGAGCATTTTCACAAAGACAATTT
TTACATAGAGATGACCTAGAATAGATTTGCATGTCTTACAACAACAACAA
CACATCTACTGTAGAAAAATGCCAAAAATAACTTGTATCGCGCATGTATC
GTCATTTAACCAAACGCATTATAAACAGGATTTAGCTGAACAATCTAAAA
AAGCAAACACTTTCTTACACCATCAACTCCATTATTCGACCAAACTTCTT
CATTTTTCAAAGGTCATAAAGGCAAAAAGAAAGAAGTCACGCCAGATACA
TCTTCAGAGGACCAAAGTAAACGACATGTCCAAAGTTATAATGATCCTTT
AGCTGAGCAAAACCCTGATGAAGATGAAGCTCATCCAATGCCACAACCAG
GCCATGTTCCACAAAACTTAAATGGGATTATCCAAAAATATAAACCAAAG
AAAGTTCAAGATGATAAGAAAAACAAAAACAAAAACAAACAAGACAATAA
GCAGTCATATGCTGCAGGAACTTGTAAGTTAATAAAATTCCTTTCCTTCA
GCAGTGTAACCCTTTCATAAATTTAAGTTTGGTTAAACCCTTCTTAAACT
AATTTTTCAAGATTGTGCTTTTCTCAGATGCTTTTTTATACTTTGAGATA
GTTCTGTTAGTTTTAAACTTCGTAGATTAAAGTGTTACGATTGATGAAAT
TGAGATTCAGTGTAGTTTTGACATCTTTCATTCCCTTTAGCCGATTCAGA
AAATTCAGAGGAAGCACCTGATGAAGCTGAGGCACCACCACCAGGAGGTG
CCCCACCCGCAGGTGGTAACCCACCACCTCCAGGAGGTGCTCAGCCACCT
CCTGCTGGAGGGCAGCCCACAACTACTCCAGCACCACCTCCTGCTGGTGA
TGATGATGACAGTGATGATAGCGATGATGATGCTCAGCCACCTGAACAAA
AACCAGCCCCAGGAGGCGGCTCTCCTCCTCCTCCAGGTGGTGCTCCTCCA
CCACCAGGAGGTGCCCCACCCCCTCCAGGCGGTGCCCCTCCACCACCAGG
TGGTGTCCCACCCCCTCCAGGTGGTGCTCCCCCACCACCAGCAGGAAAGA
AACCACCAACAGAAGCCAAATCTGACGGAGATGATCAAGAAGATTTGAAA
GCCTTACTAGATGAAAGTATTGGTAAGATGTCCAGCCATTCACAACGAAT
TCTAAAATAAAGACTGGAATGGAAAAGGAAACGATCTAGAACGTTGAAGA
TCCGAAAAACCGGATTTTCTTCAAGGTTGAAGAGATTCTTTCAGATGTCA
AATAATGGCTGCTGCAGATATGGAAATTTGGAAACCTCGTTAAAAAATCA
GATTCCCAATTCCAGTCTTAATTTTGGAGTTCGTTGATCAAATCAGTTAA
ATCTAAAAGTTATTCAAAAATAAAATCTCGATGCATCAAAAGCTAATAGA
TTCTAATTAGTCACTTTTGAGTATCACTTCAATATTCAAATAGGTCAAAA
AACCTCCTTTTCTTTCTTTTCATCTATTTAGGAAACTTAGTCAAAGCAAA
TCAAGCTGTAGAAACACTCTTATCTGCCAGCAGTGGAGGTAAGAGCTTTT
TACCGTTTTCTTCTCATGCCAATACTGCACCCACTAAACCAGGAATTTCC
TCATCTTATCTTTGTAATTATTTTTACTTTTAGGATCATCTAGTGGACCC
TCTCCATCTGGAGGTGCTCCCCCACCCGGTGGTGCTCCTCCTCCTCCAGG
CGGTGCCCCTCCACCCCCAGGTGGCGTTCCTCCTCCAGGCGGTGCCCCTC
CTCCAGGCGGTGCTCCTCCTCCAGGCGGTGCCCCTCCTCCAGGTGGTGCC
CCTCCACCCCCAGGTGGTGCCCCTCCACCCCCAGGCGGTGCCCCTCCTCC
AGGCGGTGCCCCTCCACCAGGTGGTGCTCCTCCTCCAGGCGGTGCCCCTC
CACCACCAGGTGGCGCCCCTCCCACTGAGGCTAAACCAGATGAGGCTGCT
GGTGCTCCTCCCCCTCCTGGTGGTGCCGGTGGCGCTCCTGGAGCAGCAGG
TGGCAAAGGTGGAGACTGCACTGGTTGCGAAAACCCATACTGCTGTGCCG
AACCCTTTGGAGCTAGCTCAACTGTCATTCATTTCCCAGCACCGCCATGT
GCATGTGCTCCCCCACCACCACCTTGTATGGCAATGCCATGTCCACCACC
CCCTCCTCCATGCCCTNNNNNNNNNNNNNNNNNNNNNACCATGTCCTGCA
CCTTGTCCAGTAGCATGTGCACCTCCACCACCACCACCTTGTGCACCAGC
CTGTATGCCCCCAGCTTGTGGACCAACCTGCAGTCGCGATTGTTGTGAGT
GGGATCAAGTCGTACCATCAGGTGCATTGGCAGGGGCCCTCGCTAACTAT
GCTAAAGATCATGGCAAATAAATTGGACGAAACAGACATTCTTTAATATT
CCTATCCTAAACACAATGTACATTAATATTTTCCTTTCACACTTGCATGT
TTATATTTTATGACAAAGTTTTTTTTCTGTTTATAATTTGACCGAAATGA
ATAATTTTAGAGACGAAACCAAAAAAGGTTAATGGTGATAGTGGGTGCAG
TGGTGTGTTTTCTACTTTCGTATAATTTGTCTATGATCGCTAACTGAATC
ACAATGACACACAAACACACACGCTTAAACCAAGCAAATGTTTATTTTGT
CATTTAGGTTTACCACTGCCTCCACTATCACCATTTCCATGCAGTACTTG
TACTATAATATGTTTACCTGGCTGTGATACAACTTGTTGTCATGGGGGTA
ACAAGAAAAATAAAACTTTCAATGCTAAACTACATCATCGTAAAAAGACA
CGGCATCATGATAGAAAATCTCATAAAGGATATATTTCCGATGATGATAA
AAGACATAACGATAATAACAATATGGTTGCCCCTACCATGCCTTCATTGC
CTTTATCCAGATTTGTAGTGGCCCCAACAATGCCTGCACCACCGACTGTA
TGTTGTGACAAAGACCATCCTGTAATCTTGAACTGTGATATCCCACCATG
CCAACCGACCAATTGCATCTATTGTTATAATCCTGGTTCACCGGTCGTCG
GGAATAGCCTAATTATACCGAATGCAGGCTGAAAGAGGATAATTTGTACA
TGGGATATTTACGTAGAGGAGCTGATGTATATTCATGTATAACTAACATT
ATAACTGATGCATGTCCATCATATCCAACCTTATGTCGTCATGGAGACGA
ACCGTTCGTTCTGAGCATGCGCACATGAACGTGAATTGTGACTCTATGGA
TAACTATCTACGGATGAACTAACTACAACATAATTATCGTATATCATAGT
TTTGTTATCGAATCTTTTGCTAAATGGCCAGTTAGTTCTATAGTTGGCGC
ATATATTACTTTTAAGCAAAGTAGGGCCTAGTTGGTGACATAAAGGCTTT
TCTTTAGAACACGTTGACTACACAGATATCTGTAAAGCCCGAAGGGCTAG
ATAGGCAACTTTAAGCTTTCTCCACAGCAAAAAAAAGTGAAGCAAAAATT
TGACTTTTTAAATTTCGTGCCGATGGATAGGATCTAGCATTTTAATTGTT
TTTGGAGCGCGAGATCAAAAAAGTAGGCGGCAAACGCTATTTCACATCTC
TCAAACCGGTGGAATTGCATATTTTACTCACGTGACTTTGGTAGGAAATC
CTTCCAAATCTAGGCTTCACTTTTCGATAAAAGCTGCGAATCTAGCCCTT
CGGGCTTTACAGATCTGTGGTTGACTACTGATTTTTTATTGAAAAATTGA
CAAGAAATCTTTAAGAACAAGCTTTGTACTTAAGGAAAGCCTTCTAGTTA
AAGACTTTGCTCAGCGAAAATTTAGTATAGTTTTGTTACTAGATAATGAC
ACTTTTAGGACAATTTTCATATTTATAAAAGATACAAATATAAGGCATTT
ACACTTATGTCTTGAATGAAAATTTAACATAATTTTTGGATAAAATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00067008-exon-scaffold_462-1575043694:884701..884817 | TCONS_00067008-exon-scaffold_462-1575043694:884701..884817 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1575043694:883952..884025 | TCONS_00067008-exon-scaffold_462-1575043694:883952..884025 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1575043694:882245..882505 | TCONS_00067008-exon-scaffold_462-1575043694:882245..882505 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1575043694:881596..882027 | TCONS_00067008-exon-scaffold_462-1575043694:881596..882027 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1575043694:880998..881084 | TCONS_00067008-exon-scaffold_462-1575043694:880998..881084 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1575043694:878768..880865 | TCONS_00067008-exon-scaffold_462-1575043694:878768..880865 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1510915933:884701..884817 | TCONS_00067008-exon-scaffold_462-1510915933:884701..884817 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1510915933:883952..884025 | TCONS_00067008-exon-scaffold_462-1510915933:883952..884025 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1510915933:882245..882505 | TCONS_00067008-exon-scaffold_462-1510915933:882245..882505 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1510915933:881596..882027 | TCONS_00067008-exon-scaffold_462-1510915933:881596..882027 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1510915933:880998..881084 | TCONS_00067008-exon-scaffold_462-1510915933:880998..881084 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1510915933:878768..880865 | TCONS_00067008-exon-scaffold_462-1510915933:878768..880865 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1491911889:884701..884817 | TCONS_00067008-exon-scaffold_462-1491911889:884701..884817 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1491911889:883952..884025 | TCONS_00067008-exon-scaffold_462-1491911889:883952..884025 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1491911889:882245..882505 | TCONS_00067008-exon-scaffold_462-1491911889:882245..882505 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1491911889:881596..882027 | TCONS_00067008-exon-scaffold_462-1491911889:881596..882027 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1491911889:880998..881084 | TCONS_00067008-exon-scaffold_462-1491911889:880998..881084 | Clytia hemisphaerica | exon |
TCONS_00067008-exon-scaffold_462-1491911889:878768..880865 | TCONS_00067008-exon-scaffold_462-1491911889:878768..880865 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_462 | supercontig | scaffold_462:878768..884817 - |
Blast
The following BLAST results are available for this feature:
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