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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067896 ID=TCONS_00067896|Name=TCONS_00067896|organism=Clytia hemisphaerica|type=transcript|length=1183bp
ATTTGTAGGCACTTTTAGCGTCGataccAGAAAAAGTATCAAGATTCCAA
TAATTGGAGGTTGTGCATATCACCAACATGTTACACCTACTCCGTCGAAG
AAGTTCAATCTTAATTTGCATTTGTCTTTTTGGTGCGCTCGCCTTCCGTA
GTTTGTTTGCGTCAATCAAAATACAAAGCTCGAAATTATCAGTAACTGAA
GATCCAAACAAGCTTAACTTAAACAACCTTCTTCATCCCAACGGTAAACA
TGTAAAACTGAACAGCTTAGAAAATGTCATCAATTCGGACATAAAGAACA
TGAACCTCAAACTCGAACGAATTGGTAAGAGCACTAACAGCCCTAAACTG
AAGATCTCTGCTAAGACCATCAACAAACTAAATGAGGAAATATCAATTGT
TCAAGGGCAAGAAATCGGCGAGAAAACATCCGAGGAAGAAGATCCTAGAT
TTAAGATAGTTCATCCAACGGTAAATACAACTACAGCAACATCTAGGAAA
CCTAAAATTGAACCAGTAAAGACACCGGTGAAACCTGTAAGTAAGGCACA
AATTCTAATGGAAGTTGGAAACCTTGTTGGGGACAAAACCTTACATTTCT
GTCCgttatttttcatcaatttcatGCGAAATAATGACCCAAAACTGAAT
GAACCAGAGCTTTCGAGCTATAAAAAAGTCATGTGCAAAATACAAAAAGG
AAAGCAATGCAAAACCGAAAATCTTCAAGGTCCCTTAAAAGTTAATAAGA
CAATTTTAAGTATGGAATGGAttcaaaaaaatgaactttcatttgTTAAC
AGAGGTGGGTGGTACATGCCCACAGGATGCAATAGTGGTACTCGTACGGC
TATTATAATTCCGTTTCGTAACCGCGAACAACATCTCCCCGTAATGTTAC
GTCAGTTACACGCCGTGTTACGCCGTCAACAAATTCATTACCGTATTTTT
GTGATCGAGCAATCGGACGAACATCCATTCAACCGTGGTAAAATACGTAA
TATTGGTTTCAAAGAAGCATTACGTTATTTCCCGTATACATGCTTTGTTT
TCCATGACGTAGATCTTGTTCCAGAGAATGATCGTATCTTTTACGACTGT
CGTCAATCTCCTGCGCATATGTCGGTAGCGGTGGACACGTTAGGTTATAT
GCCTCTTCAATATGAACATTTTGGAGGAGTTGT Run BLAST on NCBI transcript from alignment at scaffold_477:233731..238919- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067896 ID=TCONS_00067896|Name=TCONS_00067896|organism=Clytia hemisphaerica|type=transcript|length=5189bp|location=Sequence derived from alignment at scaffold_477:233731..238919- (Clytia hemisphaerica)
ATTTGTAGGCACTTTTAGCGTCGGTAAGTAATTCAAGTAATACTGTTATT
ACACCGATTCTTATGGTTGAATCTCTGACTCCGGAAAACTGGGGTCCTAA
GAATAGTACACGTTGTTTTTTGTTTTTAAGAAACACACTTTTAAGAAAGC
GCCTAGAAAATGCCTAAAATGCTCAGAATACCTAACAACTAAGAAACATC
TAAGAAACATGCTGAGGCTGAGAATGAGAAAATAATATTTTTTCATTCGT
ATTTTTTTAAGAACCTCCCTGATTCATCCTTCCATGAGGCTGAGTATGTG
AAAAAGTTTAGAAACATGTAAGAAACATTTAAGTGCCGAAATGGCCGAAA
AATTGATTTTATTATTTGAGAATAAAAGTAATGTTTTAAGTTCTTTGGGT
GGGTTTACATCTGTAAGAGAGAATCGATTAACACTCCCTTTGTCGATAAC
AATTCAGAACATAAACGAAACAAAAGCTCAAAATCACTTTTACGAATTCT
TTTATAAACATAATCGATCTTCCCCTTGTTATTACCATTGTTACAAGAGG
TAGGTTGGGGTACCTCTTAAGATGTAGGACGTAACGAGGAGAATATCCAT
TAAGACTTGAAAAGAAATCGTTTAAACGATTTTTCCAATTCATTTCAAAT
GCGTAAAAAATTGGAAAATGATTTCGATGATGATGATAACTACGCAAATG
ATATTTTTAAACAAGCTTTACTATACAGCGTGAACTTGTATGGTGTAGAT
ATGTATCAACGGTTGAATATAGAAAAACCATATTTGCATTCCGTGATAAA
ATTTTAACCAATGAGAAAGCTTAGGGAAAATCAATTAAGACTCAAAAGAG
GAATCGTGATGGAATCAAAAGAAATCGTGCCATTACTATTGTACTTCTTA
ATCGATTCTCTCCTAGATGTGAAGGGGGGGGGGGGGGGGCGTACGAGGTT
TGCGATTTCCGAAATATCAAATAAATTTGCCAACACTTCTGAAATTCCAT
AAAAAGATAGTTGCAATTCCGATACTGATTTTTTGGGGTATTTTTCTTCG
TTTTGACTAAGTTTTCATCAAATTTGATTTTTCATATATGAATTCCGAAA
AAGGGGGATAAAAACTTTATAATACCGAAGAAATTTCGAAGCAAAAATTC
ATGGATTTCCGATACCAAAACAATTTCAGAATTCCGAAATACCGAAGGAA
TTTTTCCCGACTTCCGAAATTCCGAAGAAAAAAGGGTCGATTTCCGCAAT
TCCGAAATACCGTACGTCACCCACTGTAAGCCCACCCTTTAGCACTTTTA
ACAAAGAATTGCCATTATGAATTGATTTTTAATCAAATCCCTAAAGAGTA
ATCAAGAATTTAATTGCAGAAATGATGCTTTGAACTTTAAAAAGACGTTA
ATAGTATTTGGCATCACCTTCTTTTATAAAAAGTGCTAAGTTTTAATGGT
TAATTAACCTTTTGTTTCGAAAATTCTTAATGAATCCATCAAAAGCTATG
GTTGTTTTTCTATGAAAAATTGGAATGAAAAATTGGTCAGAAAGCACTAT
TTTCAAGATTTTGAGACAGAAAATTTTCCGAAAATTTATTTTTAGTTGGG
TAAAAGATACACCATCTACTGCAACAAAATGCTCAAAATGTTTTTTTCTT
CGCAGAAACTAAGCTCTTCAAAGTTTAAATACTCTTCTTCGTAAAAGTCT
TCATTTTCTTCTCCATCAAATTTTTTCATTGTGAATCAGAAAATGTATAC
AACATGTCACAGTTTTGTGTGCTACATCAAGAAGAAATTTATATATTTTG
TTTGGCAAATATTAAAAGTTCACTATGGTCAGAGCCCTTAAGGCTCGATA
GGCCGATTTCTTAAAAGAAACATTGAGGCTGCTTGGTAAAACTAGTTTCT
TAAAAAGAAACGTGTAGTCAGTATACATGATAGTCAGTATATATCGTCAT
GATAAAACATAACACATTTTCCTCAACGATTGATTTTATTAAAAACAGAT
CCCGGGGGAACGGGGCAAAAAGAGCTACGGGGATCCTTTTTTCACCTCCA
CGAGTCCCAGACAGGATTGCAGAAACATCAAAGTTGAAAAACCCTATACA
TGGTATTTTTTTCGCATTTTGGGAAGATTTTCAAAAAAACCGAGTCCCAC
GGTCCATTTTTTGAACCTCAGTGGTGCATCCCTGTCTGGCAGTAAGGGTA
GTATCCCCGGGAATAAATTACTACTTAAACCTTAAAACCAAACCTTCGAG
CCAGAACCAAATCTTCATTATTCACACCTCGAAAGTACAATGCAATAGAG
GATCTTTCCTTTTTACCCGAGGGGCAAATCACTAAAATAAATCTCCTACA
CAATTTTATAAATCAAAAATAAATCAAAAATAAATCATAAATAAAAAATA
AATCAAAAATAAATCATAAATAAAAAATAAATCAGAAATAAATCATAAAT
AAAAAATAAATCAGAAATAAATCAATAAATGAAAAATAAATCAGAAATAA
ATAAAAATAAATAAAAAATCTTTCGAAAAAAAAGTGACTTTTCAACTTTT
TTTATTTTTTTGACAAAGATTTTGAGTATCAGTTCGTTATAATTTGAAAA
ATTTTTTCCATAACATTACTCCTATTCATAAATTAGAAATAAATCAAAAA
TAATTAAAAAATAAATCAAAAATAAATCATAAATCAAAAATAAATCAAAA
ATAAATCATAAATAAATCATAAATCAAAAATAAATCAGAAATAAATCAGA
AATAAATCATAAATAAAAAATAAATCAAAAATAAATCATAAATCAAAAAT
AAATCAGAAATAAATCAGAAATAAATCATAAATAAAAAATAAATCAAAAA
TAAATCATAAATCAAAAATAAATCAAAAATAAATCAAAAATAAATCAAAA
ATAAATCAAAAATAAATCATAAATCAAAAATAAATCATAAATCAAAAATA
AATCATAAATCTCGTACACCATTTTCGAGTGATTTGCCCCTCGTTTTTAT
CCTCTAACATCAGCAGTTTGGGCCAAAAATGCAATTATCCAAATAGTTTT
CCATACATATTCCAACAATATTTTGCTTAANATCCTCTAACATCAGCAGT
TTGGGCCAAAAATGCAATTATCCAAATGGTTTTCCATACATATTCCAATA
ATATTTTGCTTAGTACGAGGCGAGGGGGGAGGAAAAAATACCGATTTTGG
AAAATTGCTTCCCCACGTTGTTCTAATTATAGAGGACCCACCTCCTGTGG
GGTTTTGACTCGAAGAAAACTAAAATTGAGGTGTTTTTTGGTTGACATTT
TTAGGATTCTTAACTTTTCCATCCCTTAAATCTTATAAAGTTTATCCTAA
CAAGAAACGTTTACAATATTTCTAGCCAAGATTTAGCTTTTGCTTTTTCT
GTGACTTCTGTGTTTTTATCTCACGAAAATGTGTTTTTTCGTTGCAATTT
TCTTCCCTTAATTTATTCCATCTTGATTCTTAAAATTCTATGCAAAAGAA
TTTTGATTTGTGCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAGTGGAAAACGCATACTTTGTCCCATAGAGTGGTTCA
CCCCAGGGTAATACACTCGCTCAGCCATATGTCAGTATCTCGCAAGCTGT
AGGGTAATATAAACAACAAATCTAACGAGACGACCTCCTAAAACACTAAA
TAAAGGACTGTTCATTCCTTATCAAGCGAGGTCAGTCATAATAAAATCAA
TAAGACATTTTTTCCTTTTTTTTTTTTAGATACCAGAAAAAGTATCAAGA
TTCCAATAATTGGAGGTTGTGCATATCACCAACATGTTACACCTACTCCG
TCGAAGAAGTTCAATCTTAATTTGCATTTGTCTTTTTGGTGCGCTCGCCT
TCCGTAGTTTGTTTGCGTCAATCAAAATACAAAGCTCGAAATTATCAGTA
ACTGAAGATCCAAACAAGCTTAACTTAAACAACCTTCTTCATCCCAACGG
TAAACATGTAAAACTGAACAGCTTAGAAAATGTCATCAATTCGGACATAA
AGAACATGAACCTCAAACTCGAACGAATTGGTAAGAGCACTAACAGCCCT
AAACTGAAGATCTCTGCTAAGACCATCAACAAACTAAATGAGGAAATATC
AATTGTTCAAGGGCAAGAAATCGGCGAGAAAACATCCGAGGAAGAAGATC
CTAGATTTAAGATAGTTCATCCAACGGTAAATACAACTACAGCAACATCT
AGGAAACCTAAAATTGAACCAGTAAAGACACCGGTGAAACCTGTAAGTAA
GGCACAAATTCTAATGGAAGTTGGAAACCTTGTTGGGGACAAAACCTTAC
ATTTCTGTCCGTTATTTTTCATCAATTTCATGCGAAATAATGACCCAAAA
CTGAATGAACCAGAGCTTTCGAGCTATAAAAAAGTCATGTGCAAAATACA
AAAAGGAAAGCAATGCAAAACCGAAAATCTTCAAGGTCCCTTAAAAGTTA
ATAAGACAATTTTAAGTATGGAATGGATTCAAAAAAATGAACTTTCATTT
GTTAACAGAGGTGGGTGGTACATGCCCACAGGATGCAATAGTGGTACTCG
TACGGCTATTATAATTCCGTTTCGTAACCGCGAACAACATCTCCCCGTAA
TGTTACGTCAGTTACACGCCGTGTTACGCCGTCAACAAATTCATTACCGT
ATTTTTGTGATCGAGCAATCGGACGAACATCCATTCAACCGTGGTAAAAT
ACGTAATATTGGTTTCAAAGAAGCATTACGTTATTTCCCGTATACATGCT
TTGTTTTCCATGACGTAGATCTTGTTCCAGAGAATGATCGTATCTTTTAC
GACTGTCGTCAATCTCCTGCGCATATGTCGGTAGCGGTGGACACGTTAGG
TTATATGCCTCTTCAATATGAACATTTTGGAGGAGTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067896-exon-scaffold_477-1575043694:238897..238919 | TCONS_00067896-exon-scaffold_477-1575043694:238897..238919 | Clytia hemisphaerica | exon |
| TCONS_00067896-exon-scaffold_477-1575043694:233731..234890 | TCONS_00067896-exon-scaffold_477-1575043694:233731..234890 | Clytia hemisphaerica | exon |
| TCONS_00067896-exon-scaffold_477-1510915933:238897..238919 | TCONS_00067896-exon-scaffold_477-1510915933:238897..238919 | Clytia hemisphaerica | exon |
| TCONS_00067896-exon-scaffold_477-1510915933:233731..234890 | TCONS_00067896-exon-scaffold_477-1510915933:233731..234890 | Clytia hemisphaerica | exon |
| TCONS_00067896-exon-scaffold_477-1491911889:238897..238919 | TCONS_00067896-exon-scaffold_477-1491911889:238897..238919 | Clytia hemisphaerica | exon |
| TCONS_00067896-exon-scaffold_477-1491911889:233731..234890 | TCONS_00067896-exon-scaffold_477-1491911889:233731..234890 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:233731..238919 - |
Blast
BLAST of TCONS_00067896 vs. Swiss-Prot (Human)
Match: B4GT1 (Beta-1,4-galactosyltransferase 1 OS=Homo sapiens GN=B4GALT1 PE=1 SV=5) HSP 1 Score: 141.354 bits (355), Expect = 2.139e-37 Identity = 74/161 (45.96%), Postives = 101/161 (62.73%), Query Frame = 3
Query: 708 CKTEN--LQGPLKVNKTI-LSMEWIQKNELSFVNRGGWYMPTGCNSGTRTAIIIPFRNREQHLPVMLRQLHAVLRRQQIHYRIFVIEQSDEHPFNRGKIRNIGFKEALRYFPYTCFVFHDVDLVPENDRIFYDCRQSPAHMSVAVDTLGYMPLQYEHFGGV 1181
C E+ L GP+ + + + +E + K + V GG Y P C S + AIIIPFRNR++HL L LH VL+RQQ+ Y I+VI Q+ + FNR K+ N+GF+EAL+ + YTCFVF DVDL+P ND Y C P H+SVA+D G+ ++FGGV
Sbjct: 130 CPEESPLLVGPMLIEFNMPVDLELVAKQNPN-VKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGV 289
The following BLAST results are available for this feature:
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