TCONS_00067896 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067896
Unique NameTCONS_00067896
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1183

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067896 ID=TCONS_00067896|Name=TCONS_00067896|organism=Clytia hemisphaerica|type=transcript|length=1183bp
ATTTGTAGGCACTTTTAGCGTCGataccAGAAAAAGTATCAAGATTCCAA
TAATTGGAGGTTGTGCATATCACCAACATGTTACACCTACTCCGTCGAAG
AAGTTCAATCTTAATTTGCATTTGTCTTTTTGGTGCGCTCGCCTTCCGTA
GTTTGTTTGCGTCAATCAAAATACAAAGCTCGAAATTATCAGTAACTGAA
GATCCAAACAAGCTTAACTTAAACAACCTTCTTCATCCCAACGGTAAACA
TGTAAAACTGAACAGCTTAGAAAATGTCATCAATTCGGACATAAAGAACA
TGAACCTCAAACTCGAACGAATTGGTAAGAGCACTAACAGCCCTAAACTG
AAGATCTCTGCTAAGACCATCAACAAACTAAATGAGGAAATATCAATTGT
TCAAGGGCAAGAAATCGGCGAGAAAACATCCGAGGAAGAAGATCCTAGAT
TTAAGATAGTTCATCCAACGGTAAATACAACTACAGCAACATCTAGGAAA
CCTAAAATTGAACCAGTAAAGACACCGGTGAAACCTGTAAGTAAGGCACA
AATTCTAATGGAAGTTGGAAACCTTGTTGGGGACAAAACCTTACATTTCT
GTCCgttatttttcatcaatttcatGCGAAATAATGACCCAAAACTGAAT
GAACCAGAGCTTTCGAGCTATAAAAAAGTCATGTGCAAAATACAAAAAGG
AAAGCAATGCAAAACCGAAAATCTTCAAGGTCCCTTAAAAGTTAATAAGA
CAATTTTAAGTATGGAATGGAttcaaaaaaatgaactttcatttgTTAAC
AGAGGTGGGTGGTACATGCCCACAGGATGCAATAGTGGTACTCGTACGGC
TATTATAATTCCGTTTCGTAACCGCGAACAACATCTCCCCGTAATGTTAC
GTCAGTTACACGCCGTGTTACGCCGTCAACAAATTCATTACCGTATTTTT
GTGATCGAGCAATCGGACGAACATCCATTCAACCGTGGTAAAATACGTAA
TATTGGTTTCAAAGAAGCATTACGTTATTTCCCGTATACATGCTTTGTTT
TCCATGACGTAGATCTTGTTCCAGAGAATGATCGTATCTTTTACGACTGT
CGTCAATCTCCTGCGCATATGTCGGTAGCGGTGGACACGTTAGGTTATAT
GCCTCTTCAATATGAACATTTTGGAGGAGTTGT
Run BLAST on NCBI

transcript from alignment at scaffold_477:233731..238919-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067896 ID=TCONS_00067896|Name=TCONS_00067896|organism=Clytia hemisphaerica|type=transcript|length=5189bp|location=Sequence derived from alignment at scaffold_477:233731..238919- (Clytia hemisphaerica)
ATTTGTAGGCACTTTTAGCGTCGGTAAGTAATTCAAGTAATACTGTTATT ACACCGATTCTTATGGTTGAATCTCTGACTCCGGAAAACTGGGGTCCTAA GAATAGTACACGTTGTTTTTTGTTTTTAAGAAACACACTTTTAAGAAAGC GCCTAGAAAATGCCTAAAATGCTCAGAATACCTAACAACTAAGAAACATC TAAGAAACATGCTGAGGCTGAGAATGAGAAAATAATATTTTTTCATTCGT ATTTTTTTAAGAACCTCCCTGATTCATCCTTCCATGAGGCTGAGTATGTG AAAAAGTTTAGAAACATGTAAGAAACATTTAAGTGCCGAAATGGCCGAAA AATTGATTTTATTATTTGAGAATAAAAGTAATGTTTTAAGTTCTTTGGGT GGGTTTACATCTGTAAGAGAGAATCGATTAACACTCCCTTTGTCGATAAC AATTCAGAACATAAACGAAACAAAAGCTCAAAATCACTTTTACGAATTCT TTTATAAACATAATCGATCTTCCCCTTGTTATTACCATTGTTACAAGAGG TAGGTTGGGGTACCTCTTAAGATGTAGGACGTAACGAGGAGAATATCCAT TAAGACTTGAAAAGAAATCGTTTAAACGATTTTTCCAATTCATTTCAAAT GCGTAAAAAATTGGAAAATGATTTCGATGATGATGATAACTACGCAAATG ATATTTTTAAACAAGCTTTACTATACAGCGTGAACTTGTATGGTGTAGAT ATGTATCAACGGTTGAATATAGAAAAACCATATTTGCATTCCGTGATAAA ATTTTAACCAATGAGAAAGCTTAGGGAAAATCAATTAAGACTCAAAAGAG GAATCGTGATGGAATCAAAAGAAATCGTGCCATTACTATTGTACTTCTTA ATCGATTCTCTCCTAGATGTGAAGGGGGGGGGGGGGGGGCGTACGAGGTT TGCGATTTCCGAAATATCAAATAAATTTGCCAACACTTCTGAAATTCCAT AAAAAGATAGTTGCAATTCCGATACTGATTTTTTGGGGTATTTTTCTTCG TTTTGACTAAGTTTTCATCAAATTTGATTTTTCATATATGAATTCCGAAA AAGGGGGATAAAAACTTTATAATACCGAAGAAATTTCGAAGCAAAAATTC ATGGATTTCCGATACCAAAACAATTTCAGAATTCCGAAATACCGAAGGAA TTTTTCCCGACTTCCGAAATTCCGAAGAAAAAAGGGTCGATTTCCGCAAT TCCGAAATACCGTACGTCACCCACTGTAAGCCCACCCTTTAGCACTTTTA ACAAAGAATTGCCATTATGAATTGATTTTTAATCAAATCCCTAAAGAGTA ATCAAGAATTTAATTGCAGAAATGATGCTTTGAACTTTAAAAAGACGTTA ATAGTATTTGGCATCACCTTCTTTTATAAAAAGTGCTAAGTTTTAATGGT TAATTAACCTTTTGTTTCGAAAATTCTTAATGAATCCATCAAAAGCTATG GTTGTTTTTCTATGAAAAATTGGAATGAAAAATTGGTCAGAAAGCACTAT TTTCAAGATTTTGAGACAGAAAATTTTCCGAAAATTTATTTTTAGTTGGG TAAAAGATACACCATCTACTGCAACAAAATGCTCAAAATGTTTTTTTCTT CGCAGAAACTAAGCTCTTCAAAGTTTAAATACTCTTCTTCGTAAAAGTCT TCATTTTCTTCTCCATCAAATTTTTTCATTGTGAATCAGAAAATGTATAC AACATGTCACAGTTTTGTGTGCTACATCAAGAAGAAATTTATATATTTTG TTTGGCAAATATTAAAAGTTCACTATGGTCAGAGCCCTTAAGGCTCGATA GGCCGATTTCTTAAAAGAAACATTGAGGCTGCTTGGTAAAACTAGTTTCT TAAAAAGAAACGTGTAGTCAGTATACATGATAGTCAGTATATATCGTCAT GATAAAACATAACACATTTTCCTCAACGATTGATTTTATTAAAAACAGAT CCCGGGGGAACGGGGCAAAAAGAGCTACGGGGATCCTTTTTTCACCTCCA CGAGTCCCAGACAGGATTGCAGAAACATCAAAGTTGAAAAACCCTATACA TGGTATTTTTTTCGCATTTTGGGAAGATTTTCAAAAAAACCGAGTCCCAC GGTCCATTTTTTGAACCTCAGTGGTGCATCCCTGTCTGGCAGTAAGGGTA GTATCCCCGGGAATAAATTACTACTTAAACCTTAAAACCAAACCTTCGAG CCAGAACCAAATCTTCATTATTCACACCTCGAAAGTACAATGCAATAGAG GATCTTTCCTTTTTACCCGAGGGGCAAATCACTAAAATAAATCTCCTACA CAATTTTATAAATCAAAAATAAATCAAAAATAAATCATAAATAAAAAATA AATCAAAAATAAATCATAAATAAAAAATAAATCAGAAATAAATCATAAAT AAAAAATAAATCAGAAATAAATCAATAAATGAAAAATAAATCAGAAATAA ATAAAAATAAATAAAAAATCTTTCGAAAAAAAAGTGACTTTTCAACTTTT TTTATTTTTTTGACAAAGATTTTGAGTATCAGTTCGTTATAATTTGAAAA ATTTTTTCCATAACATTACTCCTATTCATAAATTAGAAATAAATCAAAAA TAATTAAAAAATAAATCAAAAATAAATCATAAATCAAAAATAAATCAAAA ATAAATCATAAATAAATCATAAATCAAAAATAAATCAGAAATAAATCAGA AATAAATCATAAATAAAAAATAAATCAAAAATAAATCATAAATCAAAAAT AAATCAGAAATAAATCAGAAATAAATCATAAATAAAAAATAAATCAAAAA TAAATCATAAATCAAAAATAAATCAAAAATAAATCAAAAATAAATCAAAA ATAAATCAAAAATAAATCATAAATCAAAAATAAATCATAAATCAAAAATA AATCATAAATCTCGTACACCATTTTCGAGTGATTTGCCCCTCGTTTTTAT CCTCTAACATCAGCAGTTTGGGCCAAAAATGCAATTATCCAAATAGTTTT CCATACATATTCCAACAATATTTTGCTTAANATCCTCTAACATCAGCAGT TTGGGCCAAAAATGCAATTATCCAAATGGTTTTCCATACATATTCCAATA ATATTTTGCTTAGTACGAGGCGAGGGGGGAGGAAAAAATACCGATTTTGG AAAATTGCTTCCCCACGTTGTTCTAATTATAGAGGACCCACCTCCTGTGG GGTTTTGACTCGAAGAAAACTAAAATTGAGGTGTTTTTTGGTTGACATTT TTAGGATTCTTAACTTTTCCATCCCTTAAATCTTATAAAGTTTATCCTAA CAAGAAACGTTTACAATATTTCTAGCCAAGATTTAGCTTTTGCTTTTTCT GTGACTTCTGTGTTTTTATCTCACGAAAATGTGTTTTTTCGTTGCAATTT TCTTCCCTTAATTTATTCCATCTTGATTCTTAAAATTCTATGCAAAAGAA TTTTGATTTGTGCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNAGTGGAAAACGCATACTTTGTCCCATAGAGTGGTTCA CCCCAGGGTAATACACTCGCTCAGCCATATGTCAGTATCTCGCAAGCTGT AGGGTAATATAAACAACAAATCTAACGAGACGACCTCCTAAAACACTAAA TAAAGGACTGTTCATTCCTTATCAAGCGAGGTCAGTCATAATAAAATCAA TAAGACATTTTTTCCTTTTTTTTTTTTAGATACCAGAAAAAGTATCAAGA TTCCAATAATTGGAGGTTGTGCATATCACCAACATGTTACACCTACTCCG TCGAAGAAGTTCAATCTTAATTTGCATTTGTCTTTTTGGTGCGCTCGCCT TCCGTAGTTTGTTTGCGTCAATCAAAATACAAAGCTCGAAATTATCAGTA ACTGAAGATCCAAACAAGCTTAACTTAAACAACCTTCTTCATCCCAACGG TAAACATGTAAAACTGAACAGCTTAGAAAATGTCATCAATTCGGACATAA AGAACATGAACCTCAAACTCGAACGAATTGGTAAGAGCACTAACAGCCCT AAACTGAAGATCTCTGCTAAGACCATCAACAAACTAAATGAGGAAATATC AATTGTTCAAGGGCAAGAAATCGGCGAGAAAACATCCGAGGAAGAAGATC CTAGATTTAAGATAGTTCATCCAACGGTAAATACAACTACAGCAACATCT AGGAAACCTAAAATTGAACCAGTAAAGACACCGGTGAAACCTGTAAGTAA GGCACAAATTCTAATGGAAGTTGGAAACCTTGTTGGGGACAAAACCTTAC ATTTCTGTCCGTTATTTTTCATCAATTTCATGCGAAATAATGACCCAAAA CTGAATGAACCAGAGCTTTCGAGCTATAAAAAAGTCATGTGCAAAATACA AAAAGGAAAGCAATGCAAAACCGAAAATCTTCAAGGTCCCTTAAAAGTTA ATAAGACAATTTTAAGTATGGAATGGATTCAAAAAAATGAACTTTCATTT GTTAACAGAGGTGGGTGGTACATGCCCACAGGATGCAATAGTGGTACTCG TACGGCTATTATAATTCCGTTTCGTAACCGCGAACAACATCTCCCCGTAA TGTTACGTCAGTTACACGCCGTGTTACGCCGTCAACAAATTCATTACCGT ATTTTTGTGATCGAGCAATCGGACGAACATCCATTCAACCGTGGTAAAAT ACGTAATATTGGTTTCAAAGAAGCATTACGTTATTTCCCGTATACATGCT TTGTTTTCCATGACGTAGATCTTGTTCCAGAGAATGATCGTATCTTTTAC GACTGTCGTCAATCTCCTGCGCATATGTCGGTAGCGGTGGACACGTTAGG TTATATGCCTCTTCAATATGAACATTTTGGAGGAGTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042406XLOC_042406Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067896-exon-scaffold_477-1575043694:238897..238919TCONS_00067896-exon-scaffold_477-1575043694:238897..238919Clytia hemisphaericaexon
TCONS_00067896-exon-scaffold_477-1575043694:233731..234890TCONS_00067896-exon-scaffold_477-1575043694:233731..234890Clytia hemisphaericaexon
TCONS_00067896-exon-scaffold_477-1510915933:238897..238919TCONS_00067896-exon-scaffold_477-1510915933:238897..238919Clytia hemisphaericaexon
TCONS_00067896-exon-scaffold_477-1510915933:233731..234890TCONS_00067896-exon-scaffold_477-1510915933:233731..234890Clytia hemisphaericaexon
TCONS_00067896-exon-scaffold_477-1491911889:238897..238919TCONS_00067896-exon-scaffold_477-1491911889:238897..238919Clytia hemisphaericaexon
TCONS_00067896-exon-scaffold_477-1491911889:233731..234890TCONS_00067896-exon-scaffold_477-1491911889:233731..234890Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:233731..238919 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0355199 0 0.0806977 0.0982417 0 0 0.103771 0.0965631 0.195721 0 0 0.149037 0.100632 0.268882 0.202971 4.16771 4.13061 0.0774407 0.170466 2.55389 1.5816 2.57548 2.08988 7.86084 5.25089 11.7334 13.0035 0 0.123571
Blast
BLAST of TCONS_00067896 vs. Swiss-Prot (Human)
Match: B4GT1 (Beta-1,4-galactosyltransferase 1 OS=Homo sapiens GN=B4GALT1 PE=1 SV=5)

HSP 1 Score: 141.354 bits (355), Expect = 2.139e-37
Identity = 74/161 (45.96%), Postives = 101/161 (62.73%), Query Frame = 3
Query:  708 CKTEN--LQGPLKVNKTI-LSMEWIQKNELSFVNRGGWYMPTGCNSGTRTAIIIPFRNREQHLPVMLRQLHAVLRRQQIHYRIFVIEQSDEHPFNRGKIRNIGFKEALRYFPYTCFVFHDVDLVPENDRIFYDCRQSPAHMSVAVDTLGYMPLQYEHFGGV 1181
            C  E+  L GP+ +   + + +E + K   + V  GG Y P  C S  + AIIIPFRNR++HL   L  LH VL+RQQ+ Y I+VI Q+ +  FNR K+ N+GF+EAL+ + YTCFVF DVDL+P ND   Y C   P H+SVA+D  G+     ++FGGV
Sbjct:  130 CPEESPLLVGPMLIEFNMPVDLELVAKQNPN-VKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGV 289          
The following BLAST results are available for this feature:
BLAST of TCONS_00067896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GT12.139e-3745.96Beta-1,4-galactosyltransferase 1 OS=Homo sapiens G... [more]
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