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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068384 ID=TCONS_00068384|Name=TCONS_00068384|organism=Clytia hemisphaerica|type=transcript|length=1222bpRun BLAST on NCBI protein sequence of TCONS_00068384-protein >TCONS_00068384-protein ID=TCONS_00068384-protein|Name=TCONS_00068384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp MQKQCNRMFSYSQILYRSSNQILHRRSRNILQQIRKMTGQLELFQNIGLTRun BLAST on NCBI transcript from alignment at scaffold_483:348649..362065- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068384 ID=TCONS_00068384|Name=TCONS_00068384|organism=Clytia hemisphaerica|type=transcript|length=13417bp|location=Sequence derived from alignment at scaffold_483:348649..362065- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_483:348649..362065- >TCONS_00068384 ID=TCONS_00068384|Name=TCONS_00068384|organism=Clytia hemisphaerica|type=CDS|length=9072bp|location=Sequence derived from alignment at scaffold_483:348649..362065- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068384 vs. Swiss-Prot (Human)
Match: SYQ (Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1) HSP 1 Score: 257.684 bits (657), Expect = 1.849e-77 Identity = 142/305 (46.56%), Postives = 196/305 (64.26%), Query Frame = 3
Query: 333 LELFQNIGLTEQKAKETAKNKGLAERLEKLIKQTXXXXXXXXXXXXXTLLYTLASGSIELERLKFVVDYVQKGKIASVQQLNAATTYLKSNPTTNGNDQAFKSACGIDVSYTPDQIEDCVEEILKKHKAKVIEQRYQFNTGMLLGEVSKNLKFVDMKKVKSEIDMQLLDLLGPKTEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLDRKTIQNMID-----PKTIYLT----GEAAKFHKPGENYTTENYIMTPTTMNHMKEHLDTYGKQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNG 1220
L LF ++GL+EQKA+ET KN L+ +L + Q + GS++DK+ G LLY LAS + RL F+V Y+ KI + QL+AA Y++S+P + F+ CG+ V TP+QIE+ VE + +H+ +++ +RY FN G+L+GE LK+ D K +K+E+DMQ+L LLGPK EAD K + + E DR+T +++++ +T+ L GEA KFHKPGENY T Y++TP TMN +K+HL+ G Q+RTRFPPEPNGILHIGHAKAINFNFGYAKANNG
Sbjct: 7 LSLFTSLGLSEQKARETLKNSALSAQLREAATQAQQTLGSTIDKATGILLYGLASRLRDTRRLSFLVSYIASKKIHTEPQLSAALEYVRSHPLDPIDTVDFERECGVGVIVTPEQIEEAVEAAINRHRPQLLVERYHFNMGLLMGEARAVLKWADGKMIKNEVDMQVLHLLGPKLEADLEKKFKVAKARLEET---------------DRRTAKDVVENGETADQTLSLMEQLRGEALKFHKPGENYKTPGYVVTPHTMNLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNG 296 The following BLAST results are available for this feature:
BLAST of TCONS_00068384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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