TCONS_00068898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068898
Unique NameTCONS_00068898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length958

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068898 ID=TCONS_00068898|Name=TCONS_00068898|organism=Clytia hemisphaerica|type=transcript|length=958bp
AAAGAAGCGACAAACATTTCACAGTGGGAGGATCACAACAATAGAAGTCT
GCCAGTCACCAGTAGCAATTTTATGTtgtcaatatttatttttttatagc
tTTCATTAGAGATAAAAATTCAAAGGCATTAAACTGTTGTGATGTGAGAG
TGACTTCAAGGAATATGGATAGTACGTTTGTTGTGggGTCAAAAGTATGG
TTGCAAGTAGATGACGAATGGCAACCTGCTGTAATTTCTGACAACAAAGA
TGGTCAAATATCATTTGCTATTGACAATGGAAAAGCTTTGAGTCTACCTT
TAAATACCATCAATCATGAGACAGCCATGCCAATGCATCAAACCAGTATT
GATGGTGTTGATGATATGGCAAAGCTTGGAGATTTACACGAGGCTGCTAT
TCTTTACAATCTATACCAAAGATATATGAAAGATGTTATTTATACTCATA
TTGGTTCAATCCTTGTTGCTATTAATCCTTACAAATCAATAGAAAACATG
TATGGTCAAGATGTAATCAAAAAATATGACAATAAATATCTTGGTGATAT
GCCTCCACACATTTACGCTATTGCTAATGAGGCATACTATGCCATGTGGA
GAAAAGGTGGAAATCAATGTGTGCTCATCAGTGGTGAATCAGGAGCAGGA
AAAACCGAATCAACAAAATATATTCTTCGCTTTCTGTCTGAAATGAGTCG
AAGGGCTGTTGAAGAAAAGGAGTTAACAGTTGCAGCAAATGTAGAGGAAG
CCATCGTTCAAAGCAGtCCCATCTTGGAAGCTTTTGGTAATGCAAAAACA
ATTTACAATAATAATTCAAGTCGTTTTGGCAAATTTATGGATTTGTATTT
TGGAAAAGAAGGAAACATAACTGGTGGTGTCATTGTTGATTGTATCTTTT
CACCTAAAGTCATTCTTCGATTCTTCACATATATCTTTTTTGTCATTGTT
TACCAAGA
Run BLAST on NCBI

protein sequence of TCONS_00068898-protein

>TCONS_00068898-protein ID=TCONS_00068898-protein|Name=TCONS_00068898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
MDSTFVVGSKVWLQVDDEWQPAVISDNKDGQISFAIDNGKALSLPLNTIN
HETAMPMHQTSIDGVDDMAKLGDLHEAAILYNLYQRYMKDVIYTHIGSIL
VAINPYKSIENMYGQDVIKKYDNKYLGDMPPHIYAIANEAYYAMWRKGGN
QCVLISGESGAGKTESTKYILRFLSEMSRRAVEEKELTVAANVEEAIVQS
SPILEAFGNAKTIYNNNSSRFGKFMDLYFGKEGNITGGVIVDCIFSPKVI
LRFFTYIFFVIVYQ
Run BLAST on NCBI

transcript from alignment at scaffold_49:727518..733158-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068898 ID=TCONS_00068898|Name=TCONS_00068898|organism=Clytia hemisphaerica|type=transcript|length=5641bp|location=Sequence derived from alignment at scaffold_49:727518..733158- (Clytia hemisphaerica)
AAAGAAGCGACAAACATTTCACAGTGGGAGGATCACAACAATAGAAGTCT
GCCAGTCACCAGTAGCAATTTTATGTTGTCAATATTTATTTTTTTATAGC
TTTCATTAGAGATAAAAATTCAAAGGCATTAAACTGTTGTGATGTGAGAG
TGACTTCAAGGAATATGGATAGTACGTTTGTTGTGGTAAGCAATTTTTAT
TTCTTGATTAACAATGATTAACAAAAAGACAGTCAGAAGAAAAAACGACA
GTCAGCCCCGGACATAAGTTAGCATCTGATGGATAAGATTTCAAAATAAC
AAGACTTTTGACTGGAAAAAGTTGTAGTTTAAAGCCTGAAATAGGCGTTA
AATCATCTGATGAACAGGTTTAGTTGGCAGACGTTTGTCTTTGAACTCAG
AGAGAGAAAAAAATAAAAACAACGATCCTCATCCTCTCCTCCTGCTGACA
TACCCACCAAACTCAAGGAAGCTTCAGGTGCAAAATGTTTTATGTGAAAT
GAGAAAACTTTTTGCAAGCAGAAAATCCAAACACTGGACGACCCGACTAA
ATCAGACCATTTTCTGTCTGACTGCTATGTAAGCAAAGATTTATAGATTC
AATGACCCATCATATGACATATGGTGGTATAGGCCTGAATATATCCTGAA
CATTTTTGGGTTATGCTGGGGCAAAAATAGCGAAACATTCTTTAGGCCAA
CATTGATGATCAGGCCATCAAGTTCAGGTCACTAAGCTTTGGGTTTCCAG
GTTTGGGTCATGTTTCGGACTTTATATTTCAAATTCAAAATGGCCAAGTT
TCCATTGCATTTACCAGCAGAGATTTTAAAGTTACATGAAATGACACTTT
AATTTAAAATGACCCCACAATCAAATAGACCTTTTCGCCTTTCCCACCAT
ATTGAATTGTATGCAAAAATTATGGTGGCCAAATTGCCGTGGCGAAATTC
CCTTAGAAAGTATGCAAAACATATGCAAAAAGAAACTATTAATATAAAAC
CTATATACATGCATAATTGGCATTATATTAAAGTGTGATCTTGTAGAAGA
AAGATTAAATTTGCTTCTTTTGAAAACTAGAAATAATCTAATTCGCTCAT
CTCTTAGAACAAGCACTTCAAAGAACCATAACATTAGACATAAACATAAG
CTGAAATATCACCCGCGAAGGTACAAAAATAATCTATATTCGGCTGACGG
TAAATTATTCTCCTGGGAATAGAACCGTCAGACAATCAAATCAAAACATT
GATCTGAACCCGCTAAATGTGTGACATCATAATTACTGCTTTCAGTTTGT
GTGTTTTGAAAGTTTGATGTGTGTATATACTCCGTCTTGGTGGAATTTTT
TAATGGCATGAAAACAGAATATGCAATGTCTTTAAGAACAAATTTCTAAA
AGGCTTTTATTGTTCTGTAAATATTTCTTTTTGAATTAAGAAATTCCATC
TTTTATTGTTCTGATGATTATAATATTTCTTTATACTGTAAGATGCTTTG
TTGTCTTTGTAAGATGCTTTGTTGTCTTTTTAATCTTTGTGTAAACTTGC
ATATGTTTTGCATATTTTCCAACTAAATCCAACCACGGCTTTTCGTTCCT
CTATTTTTGCATACAATTCAAGATGGCGGATGGAAAGGTGAAAAGGTCTA
TTATAGATAGACAGAAGAAAAAAGTCCATATAATTATATCTTGCATTTCA
TTCAGAATAGCTCAATTTTTCTAGCCATTAATTCTGTGGCTGCATTTGAA
AGGGGCTCAAAAGGAGAGAAACAAGTCTCCAAAATATGCCTAATTTATGC
CTTTCCAGAGTCATCTGATAATTTGTAAATTAAATTAAAGATAAATAAAA
AAGAATAGAAAATAGAAACAGCATTTTGTATTAATAGATACCGACAACTG
CTCTATCTTGGGACGATTAGTCGAAACATGGGACTGTTTGATATCTGGCC
TGTATTTTCACTTACTGTTAAATCTCTTTGACAACAAATTTGTTTTGATA
ACTCCACCAAGCTTATGATTAAGTTTATCATACTTTCTGTCATAACATGT
CACGATAACCTTCGCTGATAGGGCGCCCTTTTTAACTTTTTTGTTTTCAT
TCAAAATGACCGGACACAGATTGGAAAATTAGAGAACGCCGCCTATTGCC
CAATAGGATTGACAAATAGCGAGTGTGTAACTTGCCGCGCGAGTGACGTC
AAACGCTCCATCGTTTTGCCACTAATTTGGTCTTCTTCGTTCCAGACATT
CACATAGTGTCCCACTATGGATTTTTTTCATATTTTGATTTAAAAGCCTA
CTCGGTGCGAAGAGAAATTGTGTATTTTTTAATACGCAGTTCATTGACTC
AAATCAAATGACTTTGGAGGTTCTGTGAAATGGTGGCTGAATTGCCGTCC
CATCTGAGGAAAATAGTCCTTCCGCAGAAAATTTCAGTGTGGTGGGCAGA
AAACAACCACAATCTGATTTCAGGCTATCTTTAAAGTAAAATCACCCATT
TTGGAAATTGCTAGTCAGTCATAAAATAGTGTAAAATTGCAAATCACATT
CAAAATCAAAACATATGATATATGACAACATATACACATGATATACCCTG
AAGTTGAGTAAAATCTTTGATCTCTTACATCATAAGCAGATTAAGTGATA
TTTTATTTCAATTGTTTCAATTTTATGGTTTTCTTTATTTTAGGGGTCAA
AAGTATGGTTGCAAGTAGATGACGAATGGCAACCTGCTGTAATTTCTGAC
AACAAAGATGGTCAAATATCATTTGCTATTGACAATGGAAAAGTATGATT
TTCATATTTCTTGCTGAATTATTCACTTCACAAATTTATTGTTCTTGATT
GTATAATCTACATCTAATTTTGTATTTAAAGGGTGCACCAGAAATCACTT
ACCCTCTTTGATTTGAAATAAAATTGAAATTTCTTAAGTTTTCTCATAAC
TTTAAAAAAAATCAAATCTTGTTTAAATTGAAACTTGAATTTTGATATGT
CATTAATCCAATTTTGTACACTAGATCAAAAGTTTAAGATGAAAAATCTT
TTGAAATTGCTCAAGATTGTCAAAAGTGGACTTATCAAAGTTCTAGTTCT
AGTAATTCTTTGTAATACCTTTTGCTTGAATAAAGTATTTCAACTGCAAA
TAAAAAACAGAAATGGATGCCTTTTTAAAGTCAAAATTGTGCTTATTTTG
TTAGCAAAAGCCATAGCTTTTATCAATTTCCCATTGTTTAGCTTTTTATG
AGAATATCCTTTAAATCAGCCAGAAATTGATCATTTCATCATTGAACTGG
TGTAATTTTTACACTCTTATGATTGTTTTAATGAATTAAATAATTAAATG
CGTTCTCTATTATCATGACTAAAATTTGACTATAAAATTTGATAGGTTTG
ATTTGTCATGTTTTTGAGGAATCTCAGAATGGTGTATAGATTATGTTCTA
CGTTAGCACCAATTCGATGAGCTATCAACAAATTTTTGAAATATCTAAAG
AACTCAAAAAATTTCAAATTGAAGAGGGTAATTTATTTTCTTGCTTACCA
TACCTGGAATAAATAAAATATGTTTTTATTGATAATTTTTTACGATAGGC
TTTGAGTCTACCTTTAAATACCATCAATCATGAGACAGCCATGCCAATGC
ATCAAACCAGTATTGATGGTGTTGATGATATGGCAAAGCTTGGAGATTTA
CACGAGGCTGCTATTCTTTACAATCTATACCAAAGATATATGAAAGATGT
TATTTATGTAAGTTTTATTACCTAGTAATGACATCAAATTGTACACTGTA
GAGTTTTACCATCTCAGCAAGGTACAAAGAAAGGCTTTCCCTCTGAGACA
TAGTAATTTGCTCTGAGGACTATTTTTTGGGTTGATCAAAATTCTTTGGT
GTAAATACTTGCAATATTATAATTCTGACAAACTTGCCAGCACTTGCCAA
TGTCTCTGCTCTTCTTTAGACTCATATTGGTTCAATCCTTGTTGCTATTA
ATCCTTACAAATCAATAGAAAACATGTATGGTCAAGATGTAATCAAAAAA
TATGACAATAAATATCTTGGTGATATGCCTCCACACATTTACGCTATTGC
TAATGAGGCATACTATGCCATGTGGAGAAAAGGTGGAAATCAATGTGTGC
TCATCAGGTATGATTTTCTTGCACTAGCAAATAAAACAAACTTTCCTTCA
AAAAAGGGAGGTAATTGTTGAATCCCTGTAATATTTAGTGCTTTTCTTGT
TTTTGTTAATTCAATTGCATCACTTTCAATTCATTTTAAGACTATTCTCA
TGAAAGATCTACACAAAGATAATATTTGGTCACAGAATTCTTCTTCATCT
AGAATCAGATTCTAGCCTTAAACATTTTAATGATAAAATGTAAATGAAAA
ACCTAACAATCTATTTCAGTGGTGAATCAGGAGCAGGAAAAACCGAATCA
ACAAAATATATTCTTCGCTTTCTGTCTGAAATGAGTCGAAGGGCTGTTGA
AGAAAAGGAGTTAACAGTTGCAGCAAATGTAGAGGAAGCCATCGTTCAAA
GCAGGTAGGCTGTGTGTTTTTTATCTGCCTATAAAAGCTTGAAAAACCAG
TTAATTGCAAAGGGAATGGTGGCCAAGTTTGTTTCAATATAATCTGCAGT
AATGTAGAATTGTGCTAGGATCACGATTAACAAATCAAACCAATCAAGAC
TCTGATACCAAGTACTATTCTTCCTCAAGCTGAGCAAGCTGGATGTGGAC
TCCAAAAATTTGAAAAACACTTGCATTGTTGTTGTATTTTCATGTTCGTT
TCAAAACATACCTTTTAATTTGAAATTTTCTTTTTTACAGTCCCATCTTG
GAAGCTTTTGGTAATGCAAAAACAATTTACAATAATAATTCAAGTCGTTT
TGGCAAATTTATGGATTTGTATTTTGGAAAAGAAGGAAACATAACTGGTG
GTGTCATTGTTGATTGTATCTTTTCACCTAAAGTCATTCTTCGATTCTTC
ACATATATCTTTTTTGTCATTGTTTACCAAGAAATTTTCTACAATTTTCA
TAGAAAATCACTAGCCGTTCATTTTAAACAGATACCNAAATGAGTCGAAG
GGCTGTTGAAGAAAAGGAGTTAACAGTTGCAGCAAATGTAGAGGAAGCCA
TCGTTCAAAGCAGGTAGGCTGTGTGTTTTGTATCTGCCTATAAAAGCTTG
AAAAACCAGTTAATTGCAAAGGGAATGGTGGCCAAGTTTGTTTCAATATA
ATCTGCAGTAATGTAGAATTGTGCTAGGATCACGATTAACAAATCAAACC
AATCAAGACTCTGATACCAAGTACTATTCTTCCTCAAGCTGAGCAAGCTG
GATGTGGACTCCAAAAATTTGAAAAACACTTGCATTGTTGTTGTATTTTC
ATGTTCGTTTCAAAACATACCTTTTAATTTGAAATTTTCTTTTTTACAGT
CCCATCTTGGAAGCTTTTGGTAATGCAAAAACAATTTACAATAATAATTC
AAGTCGTTTTGGCAAATTTATGGATTTGTATTTTGGAAAAGAAGGAAACA
TAACTGGTGGTGTCATTGTTGATTGTATCTTTTCACCTAAAGTCATTCTT
CGATTCTTCACATATATCTTTTTTGTCATTGTTTACCAAGA

Coding sequence (CDS) from alignment at scaffold_49:727518..733158-

>TCONS_00068898 ID=TCONS_00068898|Name=TCONS_00068898|organism=Clytia hemisphaerica|type=CDS|length=4752bp|location=Sequence derived from alignment at scaffold_49:727518..733158- (Clytia hemisphaerica)
TCCCATCTTGGAAGCTTTTGGTAATGCAAAAACAATTTACAATAATAATT
CAAGTCGTTTTGGCAAATTTATGGATTTGTATTTTGGAAAAGAAGGAAAC
ATAACTGGTGGTGTCATTGTTGATTGTATCTTTTCACCTAAAGTCATTCT
TCGATTCTTCACATATATCTTTTTTGTCATTGTTTACCAATGGTGAATCA
GGAGCAGGAAAAACCGAATCAACAAAATATATTCTTCGCTTTCTGTCTGA
AATGAGTCGAAGGGCTGTTGAAGAAAAGGAGTTAACAGTTGCAGCAAATG
TAGAGGAAGCCATCGTTCAAAGCAGACTCATATTGGTTCAATCCTTGTTG
CTATTAATCCTTACAAATCAATAGAAAACATGTATGGTCAAGATGTAATC
AAAAAATATGACAATAAATATCTTGGTGATATGCCTCCACACATTTACGC
TATTGCTAATGAGGCATACTATGCCATGTGGAGAAAAGGTGGAAATCAAT
GTGTGCTCATCAGGCTTTGAGTCTACCTTTAAATACCATCAATCATGAGA
CAGCCATGCCAATGCATCAAACCAGTATTGATGGTGTTGATGATATGGCA
AAGCTTGGAGATTTACACGAGGCTGCTATTCTTTACAATCTATACCAAAG
ATATATGAAAGATGTTATTTATGGGTCAAAAGTATGGTTGCAAGTAGATG
ACGAATGGCAACCTGCTGTAATTTCTGACAACAAAGATGGTCAAATATCA
TTTGCTATTGACAATGGAAAAATGGATAGTACGTTTGTTGTGTCCCATCT
TGGAAGCTTTTGGTAATGCAAAAACAATTTACAATAATAATTCAAGTCGT
TTTGGCAAATTTATGGATTTGTATTTTGGAAAAGAAGGAAACATAACTGG
TGGTGTCATTGTTGATTGTATCTTTTCACCTAAAGTCATTCTTCGATTCT
TCACATATATCTTTTTTGTCATTGTTTACCAATGGTGAATCAGGAGCAGG
AAAAACCGAATCAACAAAATATATTCTTCGCTTTCTGTCTGAAATGAGTC
GAAGGGCTGTTGAAGAAAAGGAGTTAACAGTTGCAGCAAATGTAGAGGAA
GCCATCGTTCAAAGCAGACTCATATTGGTTCAATCCTTGTTGCTATTAAT
CCTTACAAATCAATAGAAAACATGTATGGTCAAGATGTAATCAAAAAATA
TGACAATAAATATCTTGGTGATATGCCTCCACACATTTACGCTATTGCTA
ATGAGGCATACTATGCCATGTGGAGAAAAGGTGGAAATCAATGTGTGCTC
ATCAGGCTTTGAGTCTACCTTTAAATACCATCAATCATGAGACAGCCATG
CCAATGCATCAAACCAGTATTGATGGTGTTGATGATATGGCAAAGCTTGG
AGATTTACACGAGGCTGCTATTCTTTACAATCTATACCAAAGATATATGA
AAGATGTTATTTATGGGTCAAAAGTATGGTTGCAAGTAGATGACGAATGG
CAACCTGCTGTAATTTCTGACAACAAAGATGGTCAAATATCATTTGCTAT
TGACAATGGAAAAATGGATAGTACGTTTGTTGTGTCCCATCTTGGAAGCT
TTTGGTAATGCAAAAACAATTTACAATAATAATTCAAGTCGTTTTGGCAA
ATTTATGGATTTGTATTTTGGAAAAGAAGGAAACATAACTGGTGGTGTCA
TTGTTGATTGTATCTTTTCACCTAAAGTCATTCTTCGATTCTTCACATAT
ATCTTTTTTGTCATTGTTTACCAATGGTGAATCAGGAGCAGGAAAAACCG
AATCAACAAAATATATTCTTCGCTTTCTGTCTGAAATGAGTCGAAGGGCT
GTTGAAGAAAAGGAGTTAACAGTTGCAGCAAATGTAGAGGAAGCCATCGT
TCAAAGCAGACTCATATTGGTTCAATCCTTGTTGCTATTAATCCTTACAA
ATCAATAGAAAACATGTATGGTCAAGATGTAATCAAAAAATATGACAATA
AATATCTTGGTGATATGCCTCCACACATTTACGCTATTGCTAATGAGGCA
TACTATGCCATGTGGAGAAAAGGTGGAAATCAATGTGTGCTCATCAGGCT
TTGAGTCTACCTTTAAATACCATCAATCATGAGACAGCCATGCCAATGCA
TCAAACCAGTATTGATGGTGTTGATGATATGGCAAAGCTTGGAGATTTAC
ACGAGGCTGCTATTCTTTACAATCTATACCAAAGATATATGAAAGATGTT
ATTTATGGGTCAAAAGTATGGTTGCAAGTAGATGACGAATGGCAACCTGC
TGTAATTTCTGACAACAAAGATGGTCAAATATCATTTGCTATTGACAATG
GAAAAATGGATAGTACGTTTGTTGTGTCCCATCTTGGAAGCTTTTGGTAA
TGCAAAAACAATTTACAATAATAATTCAAGTCGTTTTGGCAAATTTATGG
ATTTGTATTTTGGAAAAGAAGGAAACATAACTGGTGGTGTCATTGTTGAT
TGTATCTTTTCACCTAAAGTCATTCTTCGATTCTTCACATATATCTTTTT
TGTCATTGTTTACCAATGGTGAATCAGGAGCAGGAAAAACCGAATCAACA
AAATATATTCTTCGCTTTCTGTCTGAAATGAGTCGAAGGGCTGTTGAAGA
AAAGGAGTTAACAGTTGCAGCAAATGTAGAGGAAGCCATCGTTCAAAGCA
GACTCATATTGGTTCAATCCTTGTTGCTATTAATCCTTACAAATCAATAG
AAAACATGTATGGTCAAGATGTAATCAAAAAATATGACAATAAATATCTT
GGTGATATGCCTCCACACATTTACGCTATTGCTAATGAGGCATACTATGC
CATGTGGAGAAAAGGTGGAAATCAATGTGTGCTCATCAGGCTTTGAGTCT
ACCTTTAAATACCATCAATCATGAGACAGCCATGCCAATGCATCAAACCA
GTATTGATGGTGTTGATGATATGGCAAAGCTTGGAGATTTACACGAGGCT
GCTATTCTTTACAATCTATACCAAAGATATATGAAAGATGTTATTTATGG
GTCAAAAGTATGGTTGCAAGTAGATGACGAATGGCAACCTGCTGTAATTT
CTGACAACAAAGATGGTCAAATATCATTTGCTATTGACAATGGAAAAATG
GATAGTACGTTTGTTGTGTCCCATCTTGGAAGCTTTTGGTAATGCAAAAA
CAATTTACAATAATAATTCAAGTCGTTTTGGCAAATTTATGGATTTGTAT
TTTGGAAAAGAAGGAAACATAACTGGTGGTGTCATTGTTGATTGTATCTT
TTCACCTAAAGTCATTCTTCGATTCTTCACATATATCTTTTTTGTCATTG
TTTACCAATGGTGAATCAGGAGCAGGAAAAACCGAATCAACAAAATATAT
TCTTCGCTTTCTGTCTGAAATGAGTCGAAGGGCTGTTGAAGAAAAGGAGT
TAACAGTTGCAGCAAATGTAGAGGAAGCCATCGTTCAAAGCAGACTCATA
TTGGTTCAATCCTTGTTGCTATTAATCCTTACAAATCAATAGAAAACATG
TATGGTCAAGATGTAATCAAAAAATATGACAATAAATATCTTGGTGATAT
GCCTCCACACATTTACGCTATTGCTAATGAGGCATACTATGCCATGTGGA
GAAAAGGTGGAAATCAATGTGTGCTCATCAGGCTTTGAGTCTACCTTTAA
ATACCATCAATCATGAGACAGCCATGCCAATGCATCAAACCAGTATTGAT
GGTGTTGATGATATGGCAAAGCTTGGAGATTTACACGAGGCTGCTATTCT
TTACAATCTATACCAAAGATATATGAAAGATGTTATTTATGGGTCAAAAG
TATGGTTGCAAGTAGATGACGAATGGCAACCTGCTGTAATTTCTGACAAC
AAAGATGGTCAAATATCATTTGCTATTGACAATGGAAAAATGGATAGTAC
GTTTGTTGTGTCCCATCTTGGAAGCTTTTGGTAATGCAAAAACAATTTAC
AATAATAATTCAAGTCGTTTTGGCAAATTTATGGATTTGTATTTTGGAAA
AGAAGGAAACATAACTGGTGGTGTCATTGTTGATTGTATCTTTTCACCTA
AAGTCATTCTTCGATTCTTCACATATATCTTTTTTGTCATTGTTTACCAA
TGGTGAATCAGGAGCAGGAAAAACCGAATCAACAAAATATATTCTTCGCT
TTCTGTCTGAAATGAGTCGAAGGGCTGTTGAAGAAAAGGAGTTAACAGTT
GCAGCAAATGTAGAGGAAGCCATCGTTCAAAGCAGACTCATATTGGTTCA
ATCCTTGTTGCTATTAATCCTTACAAATCAATAGAAAACATGTATGGTCA
AGATGTAATCAAAAAATATGACAATAAATATCTTGGTGATATGCCTCCAC
ACATTTACGCTATTGCTAATGAGGCATACTATGCCATGTGGAGAAAAGGT
GGAAATCAATGTGTGCTCATCAGGCTTTGAGTCTACCTTTAAATACCATC
AATCATGAGACAGCCATGCCAATGCATCAAACCAGTATTGATGGTGTTGA
TGATATGGCAAAGCTTGGAGATTTACACGAGGCTGCTATTCTTTACAATC
TATACCAAAGATATATGAAAGATGTTATTTATGGGTCAAAAGTATGGTTG
CAAGTAGATGACGAATGGCAACCTGCTGTAATTTCTGACAACAAAGATGG
TCAAATATCATTTGCTATTGACAATGGAAAAATGGATAGTACGTTTGTTG
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042928XLOC_042928Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068898-proteinTCONS_00068898-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068898-exon-scaffold_49-1575043694:732974..733158TCONS_00068898-exon-scaffold_49-1575043694:732974..733158Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1575043694:730367..730465TCONS_00068898-exon-scaffold_49-1575043694:730367..730465Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1575043694:729402..729560TCONS_00068898-exon-scaffold_49-1575043694:729402..729560Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1575043694:729002..729189TCONS_00068898-exon-scaffold_49-1575043694:729002..729189Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1575043694:728605..728739TCONS_00068898-exon-scaffold_49-1575043694:728605..728739Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1575043694:727518..727709TCONS_00068898-exon-scaffold_49-1575043694:727518..727709Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1510915933:732974..733158TCONS_00068898-exon-scaffold_49-1510915933:732974..733158Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1510915933:730367..730465TCONS_00068898-exon-scaffold_49-1510915933:730367..730465Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1510915933:729402..729560TCONS_00068898-exon-scaffold_49-1510915933:729402..729560Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1510915933:729002..729189TCONS_00068898-exon-scaffold_49-1510915933:729002..729189Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1510915933:728605..728739TCONS_00068898-exon-scaffold_49-1510915933:728605..728739Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1510915933:727518..727709TCONS_00068898-exon-scaffold_49-1510915933:727518..727709Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1491911889:732974..733158TCONS_00068898-exon-scaffold_49-1491911889:732974..733158Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1491911889:730367..730465TCONS_00068898-exon-scaffold_49-1491911889:730367..730465Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1491911889:729402..729560TCONS_00068898-exon-scaffold_49-1491911889:729402..729560Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1491911889:729002..729189TCONS_00068898-exon-scaffold_49-1491911889:729002..729189Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1491911889:728605..728739TCONS_00068898-exon-scaffold_49-1491911889:728605..728739Clytia hemisphaericaexon
TCONS_00068898-exon-scaffold_49-1491911889:727518..727709TCONS_00068898-exon-scaffold_49-1491911889:727518..727709Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:727518..733158 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.22525	4.1935	2.09161	1.1909	0	0	0	0	3.62381	12.3438	11.2774	5.012	6.43504	6.68285	4.88374	8.51663	5.64943	9.51293	9.71412	8.96923	9.35531	8.36563	4.90129	3.92236	0	0.515079	6.63369	7.86628	10.1427	9.11806
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001609Myosin_head_motor_dom
IPR027417P-loop_NTPase
Vocabulary: Cellular Component
TermDefinition
GO:0016459myosin complex
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003774motor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016459 myosin complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0003774 motor activity
Blast
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BLAST of TCONS_00068898 vs. Swiss-Prot (Human)
Match: MYO10 (Unconventional myosin-X OS=Homo sapiens GN=MYO10 PE=1 SV=3)

HSP 1 Score: 269.24 bits (687), Expect = 2.842e-80
Identity = 123/252 (48.81%), Postives = 180/252 (71.43%), Query Frame = 3 
Query:  165 MDSTFVVGSKVWLQVDDEWQPAVISDNKDGQISFAIDNGKALSLPLNTINHETAMPMHQTSIDGVDDMAKLGDLHEAAILYNLYQRYMKDVIYTHIGSILVAINPYKSIENMYGQDVIKKYDNKYLGDMPPHIYAIANEAYYAMWRKGGNQCVLISGESGAGKTESTKYILRFLSEMSRRAVEEKELTVAANVEEAIVQSSPILEAFGNAKTIYNNNSSRFGKFMDLYFGKEGNITGGVIVDCIFSPKVILR 920
            MD+ F  G++VWL+ + +  P+ ++   +G + F  D G+  +   +TI H+    MH T+ +GVDDMA L +LH  +I+YNL+QRY ++ IYT+IGSIL ++NPY+ I  +Y    +++Y  ++LG++PPHI+AIANE Y  +W++  NQC+LISGESGAGKTESTK IL+FLS +S++++E       + VE AI++SSPI+EAFGNAKT+YNNNSSRFGKF+ L   ++GNI GG IVD +     ++R
Sbjct:    1 MDNFFTEGTRVWLRENGQHFPSTVNSCAEGIVVFRTDYGQVFTYKQSTITHQKVTAMHPTNEEGVDDMASLTELHGGSIMYNLFQRYKRNQIYTYIGSILASVNPYQPIAGLYEPATMEQYSRRHLGELPPHIFAIANECYRCLWKRHDNQCILISGESGAGKTESTKLILKFLSVISQQSLELSLKEKTSCVERAILESSPIMEAFGNAKTVYNNNSSRFGKFVQLNICQKGNIQGGRIVDYLLEKNRVVR 252
The following BLAST results are available for this feature:
BLAST of TCONS_00068898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYO102.842e-8048.81Unconventional myosin-X OS=Homo sapiens GN=MYO10 P... [more]
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