TCONS_00068899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068899
Unique NameTCONS_00068899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length892

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068899 ID=TCONS_00068899|Name=TCONS_00068899|organism=Clytia hemisphaerica|type=transcript|length=892bp
AAAGAAGCGACAAACATTTCACAGTGGGAGGATCACAACAATAGAAGTCT
GCCAGTCACCAGTAGCAATTTTATGTtgtcaatatttatttttttatagc
tTTCATTAGAGATAAAAATTCAAAGGCATTAAACTGTTGTGATGTGAGAG
TGACTTCAAGGAATATGGATAGTACGTTTGTTGTGggGTCAAAAGTATGG
TTGCAAGTAGATGACGAATGGCAACCTGCTGTAATTTCTGACAACAAAGA
TGGTCAAATATCATTTGCTATTGACAATGGAAAAGCTTTGAGTCTACCTT
TAAATACCATCAATCATGAGACAGCCATGCCAATGCATCAAACCAGTATT
GATGGTGTTGATGATATGGCAAAGCTTGGAGATTTACACGAGGCTGCTAT
TCTTTACAATCTATACCAAAGATATATGAAAGATGTTATTTATACTCATA
TTGGTTCAATCCTTGTTGCTATTAATCCTTACAAATCAATAGAAAACATG
TATGGTCAAGATGTAATCAAAAAATATGACAATAAATATCTTGGTGATAT
GCCTCCACACATTTACGCTATTGCTAATGAGGCATACTATGCCATGTGGA
GAAAAGGTGGAAATCAATGTGTGCTCATCAGTGGTGAATCAGGAGCAGGA
AAAACCGAATCAACAAAATATATTCTTCGCTTTCTGTCTGAAATGAGTCG
AAGGGCTGTTGAAGAAAAGGAGTTAACAGTTGCAGCAAATGTAGAGGAAG
CCATCGTTCAAAGCAGtCCCATCTTGGAAGCTTTTGGTAATGCAAAAACA
ATTTACAATAATAATTCAAGTCGTTTTGGCAAATTTATGGATTTGTATTT
TGGAAAAGAAGGAAACATAACTGGTGGTGTCATTGTTGATTG
Run BLAST on NCBI

transcript from alignment at scaffold_49:728193..733158-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068899 ID=TCONS_00068899|Name=TCONS_00068899|organism=Clytia hemisphaerica|type=transcript|length=4966bp|location=Sequence derived from alignment at scaffold_49:728193..733158- (Clytia hemisphaerica)
AAAGAAGCGACAAACATTTCACAGTGGGAGGATCACAACAATAGAAGTCT
GCCAGTCACCAGTAGCAATTTTATGTTGTCAATATTTATTTTTTTATAGC
TTTCATTAGAGATAAAAATTCAAAGGCATTAAACTGTTGTGATGTGAGAG
TGACTTCAAGGAATATGGATAGTACGTTTGTTGTGGTAAGCAATTTTTAT
TTCTTGATTAACAATGATTAACAAAAAGACAGTCAGAAGAAAAAACGACA
GTCAGCCCCGGACATAAGTTAGCATCTGATGGATAAGATTTCAAAATAAC
AAGACTTTTGACTGGAAAAAGTTGTAGTTTAAAGCCTGAAATAGGCGTTA
AATCATCTGATGAACAGGTTTAGTTGGCAGACGTTTGTCTTTGAACTCAG
AGAGAGAAAAAAATAAAAACAACGATCCTCATCCTCTCCTCCTGCTGACA
TACCCACCAAACTCAAGGAAGCTTCAGGTGCAAAATGTTTTATGTGAAAT
GAGAAAACTTTTTGCAAGCAGAAAATCCAAACACTGGACGACCCGACTAA
ATCAGACCATTTTCTGTCTGACTGCTATGTAAGCAAAGATTTATAGATTC
AATGACCCATCATATGACATATGGTGGTATAGGCCTGAATATATCCTGAA
CATTTTTGGGTTATGCTGGGGCAAAAATAGCGAAACATTCTTTAGGCCAA
CATTGATGATCAGGCCATCAAGTTCAGGTCACTAAGCTTTGGGTTTCCAG
GTTTGGGTCATGTTTCGGACTTTATATTTCAAATTCAAAATGGCCAAGTT
TCCATTGCATTTACCAGCAGAGATTTTAAAGTTACATGAAATGACACTTT
AATTTAAAATGACCCCACAATCAAATAGACCTTTTCGCCTTTCCCACCAT
ATTGAATTGTATGCAAAAATTATGGTGGCCAAATTGCCGTGGCGAAATTC
CCTTAGAAAGTATGCAAAACATATGCAAAAAGAAACTATTAATATAAAAC
CTATATACATGCATAATTGGCATTATATTAAAGTGTGATCTTGTAGAAGA
AAGATTAAATTTGCTTCTTTTGAAAACTAGAAATAATCTAATTCGCTCAT
CTCTTAGAACAAGCACTTCAAAGAACCATAACATTAGACATAAACATAAG
CTGAAATATCACCCGCGAAGGTACAAAAATAATCTATATTCGGCTGACGG
TAAATTATTCTCCTGGGAATAGAACCGTCAGACAATCAAATCAAAACATT
GATCTGAACCCGCTAAATGTGTGACATCATAATTACTGCTTTCAGTTTGT
GTGTTTTGAAAGTTTGATGTGTGTATATACTCCGTCTTGGTGGAATTTTT
TAATGGCATGAAAACAGAATATGCAATGTCTTTAAGAACAAATTTCTAAA
AGGCTTTTATTGTTCTGTAAATATTTCTTTTTGAATTAAGAAATTCCATC
TTTTATTGTTCTGATGATTATAATATTTCTTTATACTGTAAGATGCTTTG
TTGTCTTTGTAAGATGCTTTGTTGTCTTTTTAATCTTTGTGTAAACTTGC
ATATGTTTTGCATATTTTCCAACTAAATCCAACCACGGCTTTTCGTTCCT
CTATTTTTGCATACAATTCAAGATGGCGGATGGAAAGGTGAAAAGGTCTA
TTATAGATAGACAGAAGAAAAAAGTCCATATAATTATATCTTGCATTTCA
TTCAGAATAGCTCAATTTTTCTAGCCATTAATTCTGTGGCTGCATTTGAA
AGGGGCTCAAAAGGAGAGAAACAAGTCTCCAAAATATGCCTAATTTATGC
CTTTCCAGAGTCATCTGATAATTTGTAAATTAAATTAAAGATAAATAAAA
AAGAATAGAAAATAGAAACAGCATTTTGTATTAATAGATACCGACAACTG
CTCTATCTTGGGACGATTAGTCGAAACATGGGACTGTTTGATATCTGGCC
TGTATTTTCACTTACTGTTAAATCTCTTTGACAACAAATTTGTTTTGATA
ACTCCACCAAGCTTATGATTAAGTTTATCATACTTTCTGTCATAACATGT
CACGATAACCTTCGCTGATAGGGCGCCCTTTTTAACTTTTTTGTTTTCAT
TCAAAATGACCGGACACAGATTGGAAAATTAGAGAACGCCGCCTATTGCC
CAATAGGATTGACAAATAGCGAGTGTGTAACTTGCCGCGCGAGTGACGTC
AAACGCTCCATCGTTTTGCCACTAATTTGGTCTTCTTCGTTCCAGACATT
CACATAGTGTCCCACTATGGATTTTTTTCATATTTTGATTTAAAAGCCTA
CTCGGTGCGAAGAGAAATTGTGTATTTTTTAATACGCAGTTCATTGACTC
AAATCAAATGACTTTGGAGGTTCTGTGAAATGGTGGCTGAATTGCCGTCC
CATCTGAGGAAAATAGTCCTTCCGCAGAAAATTTCAGTGTGGTGGGCAGA
AAACAACCACAATCTGATTTCAGGCTATCTTTAAAGTAAAATCACCCATT
TTGGAAATTGCTAGTCAGTCATAAAATAGTGTAAAATTGCAAATCACATT
CAAAATCAAAACATATGATATATGACAACATATACACATGATATACCCTG
AAGTTGAGTAAAATCTTTGATCTCTTACATCATAAGCAGATTAAGTGATA
TTTTATTTCAATTGTTTCAATTTTATGGTTTTCTTTATTTTAGGGGTCAA
AAGTATGGTTGCAAGTAGATGACGAATGGCAACCTGCTGTAATTTCTGAC
AACAAAGATGGTCAAATATCATTTGCTATTGACAATGGAAAAGTATGATT
TTCATATTTCTTGCTGAATTATTCACTTCACAAATTTATTGTTCTTGATT
GTATAATCTACATCTAATTTTGTATTTAAAGGGTGCACCAGAAATCACTT
ACCCTCTTTGATTTGAAATAAAATTGAAATTTCTTAAGTTTTCTCATAAC
TTTAAAAAAAATCAAATCTTGTTTAAATTGAAACTTGAATTTTGATATGT
CATTAATCCAATTTTGTACACTAGATCAAAAGTTTAAGATGAAAAATCTT
TTGAAATTGCTCAAGATTGTCAAAAGTGGACTTATCAAAGTTCTAGTTCT
AGTAATTCTTTGTAATACCTTTTGCTTGAATAAAGTATTTCAACTGCAAA
TAAAAAACAGAAATGGATGCCTTTTTAAAGTCAAAATTGTGCTTATTTTG
TTAGCAAAAGCCATAGCTTTTATCAATTTCCCATTGTTTAGCTTTTTATG
AGAATATCCTTTAAATCAGCCAGAAATTGATCATTTCATCATTGAACTGG
TGTAATTTTTACACTCTTATGATTGTTTTAATGAATTAAATAATTAAATG
CGTTCTCTATTATCATGACTAAAATTTGACTATAAAATTTGATAGGTTTG
ATTTGTCATGTTTTTGAGGAATCTCAGAATGGTGTATAGATTATGTTCTA
CGTTAGCACCAATTCGATGAGCTATCAACAAATTTTTGAAATATCTAAAG
AACTCAAAAAATTTCAAATTGAAGAGGGTAATTTATTTTCTTGCTTACCA
TACCTGGAATAAATAAAATATGTTTTTATTGATAATTTTTTACGATAGGC
TTTGAGTCTACCTTTAAATACCATCAATCATGAGACAGCCATGCCAATGC
ATCAAACCAGTATTGATGGTGTTGATGATATGGCAAAGCTTGGAGATTTA
CACGAGGCTGCTATTCTTTACAATCTATACCAAAGATATATGAAAGATGT
TATTTATGTAAGTTTTATTACCTAGTAATGACATCAAATTGTACACTGTA
GAGTTTTACCATCTCAGCAAGGTACAAAGAAAGGCTTTCCCTCTGAGACA
TAGTAATTTGCTCTGAGGACTATTTTTTGGGTTGATCAAAATTCTTTGGT
GTAAATACTTGCAATATTATAATTCTGACAAACTTGCCAGCACTTGCCAA
TGTCTCTGCTCTTCTTTAGACTCATATTGGTTCAATCCTTGTTGCTATTA
ATCCTTACAAATCAATAGAAAACATGTATGGTCAAGATGTAATCAAAAAA
TATGACAATAAATATCTTGGTGATATGCCTCCACACATTTACGCTATTGC
TAATGAGGCATACTATGCCATGTGGAGAAAAGGTGGAAATCAATGTGTGC
TCATCAGGTATGATTTTCTTGCACTAGCAAATAAAACAAACTTTCCTTCA
AAAAAGGGAGGTAATTGTTGAATCCCTGTAATATTTAGTGCTTTTCTTGT
TTTTGTTAATTCAATTGCATCACTTTCAATTCATTTTAAGACTATTCTCA
TGAAAGATCTACACAAAGATAATATTTGGTCACAGAATTCTTCTTCATCT
AGAATCAGATTCTAGCCTTAAACATTTTAATGATAAAATGTAAATGAAAA
ACCTAACAATCTATTTCAGTGGTGAATCAGGAGCAGGAAAAACCGAATCA
ACAAAATATATTCTTCGCTTTCTGTCTGAAATGAGTCGAAGGGCTGTTGA
AGAAAAGGAGTTAACAGTTGCAGCAAATGTAGAGGAAGCCATCGTTCAAA
GCAGGTAGGCTGTGTGTTTTTTATCTGCCTATAAAAGCTTGAAAAACCAG
TTAATTGCAAAGGGAATGGTGGCCAAGTTTGTTTCAATATAATCTGCAGT
AATGTAGAATTGTGCTAGGATCACGATTAACAAATCAAACCAATCAAGAC
TCTGATACCAAGTACTATTCTTCCTCAAGCTGAGCAAGCTGGATGTGGAC
TCCAAAAATTTGAAAAACACTTGCATTGTTGTTGTATTTTCATGTTCGTT
TCAAAACATACCTTTTAATTTGAAATTTTCTTTTTTACAGTCCCATCTTG
GAAGCTTTTGGTAATGCAAAAACAATTTACAATAATAATTCAAGTCGTTT
TGGCAAATTTATGGATTTGTATTTTGGAAAAGAAGGAAACATAACTGGTG
GTGTCATTGTTGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042928XLOC_042928Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068899-exon-scaffold_49-1575043694:732974..733158TCONS_00068899-exon-scaffold_49-1575043694:732974..733158Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1575043694:730367..730465TCONS_00068899-exon-scaffold_49-1575043694:730367..730465Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1575043694:729402..729560TCONS_00068899-exon-scaffold_49-1575043694:729402..729560Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1575043694:729002..729189TCONS_00068899-exon-scaffold_49-1575043694:729002..729189Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1575043694:728605..728739TCONS_00068899-exon-scaffold_49-1575043694:728605..728739Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1575043694:728193..728318TCONS_00068899-exon-scaffold_49-1575043694:728193..728318Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1510915933:732974..733158TCONS_00068899-exon-scaffold_49-1510915933:732974..733158Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1510915933:730367..730465TCONS_00068899-exon-scaffold_49-1510915933:730367..730465Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1510915933:729402..729560TCONS_00068899-exon-scaffold_49-1510915933:729402..729560Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1510915933:729002..729189TCONS_00068899-exon-scaffold_49-1510915933:729002..729189Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1510915933:728605..728739TCONS_00068899-exon-scaffold_49-1510915933:728605..728739Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1510915933:728193..728318TCONS_00068899-exon-scaffold_49-1510915933:728193..728318Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1491911889:732974..733158TCONS_00068899-exon-scaffold_49-1491911889:732974..733158Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1491911889:730367..730465TCONS_00068899-exon-scaffold_49-1491911889:730367..730465Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1491911889:729402..729560TCONS_00068899-exon-scaffold_49-1491911889:729402..729560Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1491911889:729002..729189TCONS_00068899-exon-scaffold_49-1491911889:729002..729189Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1491911889:728605..728739TCONS_00068899-exon-scaffold_49-1491911889:728605..728739Clytia hemisphaericaexon
TCONS_00068899-exon-scaffold_49-1491911889:728193..728318TCONS_00068899-exon-scaffold_49-1491911889:728193..728318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:728193..733158 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.722494	0.821202	0	0.822996	20.8047	14.5581	19.5004	23.1327	6.53134	6.30747	0	3.56742	4.79252	4.79769	2.84408	3.25836	6.8677	3.79633	1.82636	5.47609	0.488255	3.24582	0.04486	3.4416	16.3406	15.4124	7.82509	4.98006	1.84929	2.80617
Blast
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BLAST of TCONS_00068899 vs. Swiss-Prot (Human)
Match: MYO10 (Unconventional myosin-X OS=Homo sapiens GN=MYO10 PE=1 SV=3)

HSP 1 Score: 268.085 bits (684), Expect = 2.706e-80
Identity = 122/242 (50.41%), Postives = 176/242 (72.73%), Query Frame = 3 
Query:  165 MDSTFVVGSKVWLQVDDEWQPAVISDNKDGQISFAIDNGKALSLPLNTINHETAMPMHQTSIDGVDDMAKLGDLHEAAILYNLYQRYMKDVIYTHIGSILVAINPYKSIENMYGQDVIKKYDNKYLGDMPPHIYAIANEAYYAMWRKGGNQCVLISGESGAGKTESTKYILRFLSEMSRRAVEEKELTVAANVEEAIVQSSPILEAFGNAKTIYNNNSSRFGKFMDLYFGKEGNITGGVIVD 890
            MD+ F  G++VWL+ + +  P+ ++   +G + F  D G+  +   +TI H+    MH T+ +GVDDMA L +LH  +I+YNL+QRY ++ IYT+IGSIL ++NPY+ I  +Y    +++Y  ++LG++PPHI+AIANE Y  +W++  NQC+LISGESGAGKTESTK IL+FLS +S++++E       + VE AI++SSPI+EAFGNAKT+YNNNSSRFGKF+ L   ++GNI GG IVD
Sbjct:    1 MDNFFTEGTRVWLRENGQHFPSTVNSCAEGIVVFRTDYGQVFTYKQSTITHQKVTAMHPTNEEGVDDMASLTELHGGSIMYNLFQRYKRNQIYTYIGSILASVNPYQPIAGLYEPATMEQYSRRHLGELPPHIFAIANECYRCLWKRHDNQCILISGESGAGKTESTKLILKFLSVISQQSLELSLKEKTSCVERAILESSPIMEAFGNAKTVYNNNSSRFGKFVQLNICQKGNIQGGRIVD 242
The following BLAST results are available for this feature:
BLAST of TCONS_00068899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYO102.706e-8050.41Unconventional myosin-X OS=Homo sapiens GN=MYO10 P... [more]
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