TCONS_00069482 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069482
Unique NameTCONS_00069482
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069482 ID=TCONS_00069482|Name=TCONS_00069482|organism=Clytia hemisphaerica|type=transcript|length=543bp
GGTATGGTGATTCGTCTCGAGAGAAACTACCAATATTCAAATgcaaatca
aaatcaaactcGTTCGCAACtccaacttttgtttttgttgatgcGCTGCC
TGCTTTTTCCAGTGAACCCCGATAAATGGCGCCTTCATTTGTTTGGGTAA
CTTTGCTCAGTAATTCTCTATGGATAGCATTTGCTTTTTGTTTGGATTCT
TTTCTATCATCGCTTGAGGGTATTACTTCATTGTTATAGTAACTAAGAAG
GTCTTCTGAAGATTTTCTCGCTGCTTCGGTGGTTTGTTTAGACGTGTTGC
TCTTTGTGATCGAATGTACTTTTTTCATATGCCTTGacagagTCTTCGCG
CTCTTACATCTTGCTGAACAATAGTTGCAAGCTTCTGGAAGATATAAAAT
TATTGAAGAGCTGTTGCCATGTTTGGTGGTCATTGCTTTATGCTTGTCAA
GGTCATTTTGCTCTTTGTATGTCCGTTGTTTTCTTCTGCATGATGGATGG
TCGCATCTCAATATTGATGGGTATTTATAGCTCAACATCCTGA
Run BLAST on NCBI

transcript from alignment at scaffold_500:140803..142908+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069482 ID=TCONS_00069482|Name=TCONS_00069482|organism=Clytia hemisphaerica|type=transcript|length=2106bp|location=Sequence derived from alignment at scaffold_500:140803..142908+ (Clytia hemisphaerica)
GGTATGGTGATTCGTCTCGAGAGAAACTACCAATATTCAAATgcaaatca
aaatcaaactcGTTCGCAACtccaacttttgtttttgttgatgcGCTGCC
TGCTTTTTCCAGTGAACCCCGATAAATGGCGCCTTCATTTGTTTGGGTAA
CTTTGCTCAGTAATTCTCTATGGATAGCATTTGCTTTTTGTTTGGATTCT
TTTCTATCATCGCTTGAGGGTATTACTTCATTGTTATAGTAACTAAGAAG
GTCTTCTGAAGATTTTCTCGCTGCTTCGGTGGTTTGTTTAGACGTGTTGC
TCTTTGTGATCGAATGTACTTTTTTCATATGCCTTGacagaggccccccc
agcggacccaaatttcacgtattcacgcaaaaaaaatttGCAATTCACGC
ATTCACGCAAGTTTTTCTCGAAattcacgcaaacccaattttttgggaaa
tcggggaaattttcggaaaaaatcggggaaaatgtcaaaaatagaggtct
tgcacatttcgctaagttacgtaatctacgtaatttccgccattatggag
taaaacgttcgatttgcataaaaaagtatgacaaggctgtactcgagata
ttattcgaccggatctggtcatgcaattgagaaaaacttaactcagtagc
gattttttcctgtagacctgactataaaacaccgtgttattggtagcgtc
ataagaagcccccaaatagaaagcgttacgtaatttttccatcacgcaaa
atatttgattcttctaacttgtcacgatcATTTGGAAATggtgaagcttc
tgcagttaacgtatcgcgatagtaagtgaagagatatgcgccgcaggcga
atttttgtacataaaatagcttaaacattatcaaaaataggtcaaacaaa
ctcgaggatgacaccatgatgcttagctcaggggtaaggaggcgcagcgg
cgcaaccatggtttacgcagagaggaaatttttgcatttttgtcactcgc
gtttggctaaaaatgctctctttaacaccattgaaaaagaatgtagtcta
aattcgttagaggcaaggtacgatcgcttgatagcttgtaaaatatggta
aaagaatgaacatttgttgcgagcaaagcgatcaaaaaaaattaaaaaga
atggttttaatcagggctcgcgaattaatttcctaacgtggaggggccga
aaacatagtgactaaggaggcgtaaccatgttttgcgccgacaggagaaa
atttctattttaaccctctgatgtgcttTAAATACGACTCCATTTCAGAC
TAATTTTGCCAAGAAATCAGGTTAAACGAAAGTCTACATCATGggtaaaa
atttctttgaaataagtttctttttatttgcaaaaacgtggtgaagtcat
ggccgcctcctgcccCCAGTGGCTCTAGCCCTGGCTGGCCCTGACCCTGG
CCctggatcactcatcatgcataaccatggttttatcttaaacaaacact
ttcaagggggcAAATTATAGATATTTAAGATTCGAgagaaaatctggaaa
tttaaggtgtctagattgctagaaagcgcatctaaatcatgaatcgttat
ataaaataaagaatttgaaagttgctgatttttttgtgcacctttacctg
gcatcccttgaattcgggataggtgcgcaccttggggttttctaaaaact
gtgaaaaggaaaaattcacgcgttcacgcaaaaaacagggcagattcacg
cattcacgcaatagaaatatggattttcacgttcacgcaagttttttcaa
ttcacgcattcacgcaattttttttcgattttcacgcattcacgcaacca
aaaaagcccattcacgcattcacgcaaaccgctgggggggggcccCTTGA
CAAAGTCTTCGCGCTCTTACATCTTGCTGAACAATAGTTGCAAGCTTCTG
GAAGATATAAAATTATTGAAGAGCTGTTGCCATGTTTGGTGGTCATTGCT
TTATGCTTGTCAAGGTCATTTTGCTCTTTGTATGTCCGTTGTTTTCTTCT
GCATGATGGATGGTCGCATCTCAATATTGATGGGTATTTATAGCTCAACA
TCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043306XLOC_043306Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069482-exon-scaffold_500-1491911889:140803..141144TCONS_00069482-exon-scaffold_500-1491911889:140803..141144Clytia hemisphaericaexon
TCONS_00069482-exon-scaffold_500-1510915933:140803..141144TCONS_00069482-exon-scaffold_500-1510915933:140803..141144Clytia hemisphaericaexon
TCONS_00069482-exon-scaffold_500-1575043694:140803..141144TCONS_00069482-exon-scaffold_500-1575043694:140803..141144Clytia hemisphaericaexon
TCONS_00069482-exon-scaffold_500-1491911889:142708..142908TCONS_00069482-exon-scaffold_500-1491911889:142708..142908Clytia hemisphaericaexon
TCONS_00069482-exon-scaffold_500-1510915933:142708..142908TCONS_00069482-exon-scaffold_500-1510915933:142708..142908Clytia hemisphaericaexon
TCONS_00069482-exon-scaffold_500-1575043694:142708..142908TCONS_00069482-exon-scaffold_500-1575043694:142708..142908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_500supercontigscaffold_500:140803..142908 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.207164	0	0.117664	0	0	0.136564	0	0	0.110873	0	0.353712	0.918373	0.880375	1.08568	0.517824	0.159479	0.245191	1.80664	1.89052	0.1027	0.150281	0.121791	0.110725	1.59662	2.74812	0.2913	1.39897	0	0.120118
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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