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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069482 ID=TCONS_00069482|Name=TCONS_00069482|organism=Clytia hemisphaerica|type=transcript|length=543bp
GGTATGGTGATTCGTCTCGAGAGAAACTACCAATATTCAAATgcaaatca
aaatcaaactcGTTCGCAACtccaacttttgtttttgttgatgcGCTGCC
TGCTTTTTCCAGTGAACCCCGATAAATGGCGCCTTCATTTGTTTGGGTAA
CTTTGCTCAGTAATTCTCTATGGATAGCATTTGCTTTTTGTTTGGATTCT
TTTCTATCATCGCTTGAGGGTATTACTTCATTGTTATAGTAACTAAGAAG
GTCTTCTGAAGATTTTCTCGCTGCTTCGGTGGTTTGTTTAGACGTGTTGC
TCTTTGTGATCGAATGTACTTTTTTCATATGCCTTGacagagTCTTCGCG
CTCTTACATCTTGCTGAACAATAGTTGCAAGCTTCTGGAAGATATAAAAT
TATTGAAGAGCTGTTGCCATGTTTGGTGGTCATTGCTTTATGCTTGTCAA
GGTCATTTTGCTCTTTGTATGTCCGTTGTTTTCTTCTGCATGATGGATGG
TCGCATCTCAATATTGATGGGTATTTATAGCTCAACATCCTGA Run BLAST on NCBI transcript from alignment at scaffold_500:140803..142908+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069482 ID=TCONS_00069482|Name=TCONS_00069482|organism=Clytia hemisphaerica|type=transcript|length=2106bp|location=Sequence derived from alignment at scaffold_500:140803..142908+ (Clytia hemisphaerica)
GGTATGGTGATTCGTCTCGAGAGAAACTACCAATATTCAAATgcaaatca
aaatcaaactcGTTCGCAACtccaacttttgtttttgttgatgcGCTGCC
TGCTTTTTCCAGTGAACCCCGATAAATGGCGCCTTCATTTGTTTGGGTAA
CTTTGCTCAGTAATTCTCTATGGATAGCATTTGCTTTTTGTTTGGATTCT
TTTCTATCATCGCTTGAGGGTATTACTTCATTGTTATAGTAACTAAGAAG
GTCTTCTGAAGATTTTCTCGCTGCTTCGGTGGTTTGTTTAGACGTGTTGC
TCTTTGTGATCGAATGTACTTTTTTCATATGCCTTGacagaggccccccc
agcggacccaaatttcacgtattcacgcaaaaaaaatttGCAATTCACGC
ATTCACGCAAGTTTTTCTCGAAattcacgcaaacccaattttttgggaaa
tcggggaaattttcggaaaaaatcggggaaaatgtcaaaaatagaggtct
tgcacatttcgctaagttacgtaatctacgtaatttccgccattatggag
taaaacgttcgatttgcataaaaaagtatgacaaggctgtactcgagata
ttattcgaccggatctggtcatgcaattgagaaaaacttaactcagtagc
gattttttcctgtagacctgactataaaacaccgtgttattggtagcgtc
ataagaagcccccaaatagaaagcgttacgtaatttttccatcacgcaaa
atatttgattcttctaacttgtcacgatcATTTGGAAATggtgaagcttc
tgcagttaacgtatcgcgatagtaagtgaagagatatgcgccgcaggcga
atttttgtacataaaatagcttaaacattatcaaaaataggtcaaacaaa
ctcgaggatgacaccatgatgcttagctcaggggtaaggaggcgcagcgg
cgcaaccatggtttacgcagagaggaaatttttgcatttttgtcactcgc
gtttggctaaaaatgctctctttaacaccattgaaaaagaatgtagtcta
aattcgttagaggcaaggtacgatcgcttgatagcttgtaaaatatggta
aaagaatgaacatttgttgcgagcaaagcgatcaaaaaaaattaaaaaga
atggttttaatcagggctcgcgaattaatttcctaacgtggaggggccga
aaacatagtgactaaggaggcgtaaccatgttttgcgccgacaggagaaa
atttctattttaaccctctgatgtgcttTAAATACGACTCCATTTCAGAC
TAATTTTGCCAAGAAATCAGGTTAAACGAAAGTCTACATCATGggtaaaa
atttctttgaaataagtttctttttatttgcaaaaacgtggtgaagtcat
ggccgcctcctgcccCCAGTGGCTCTAGCCCTGGCTGGCCCTGACCCTGG
CCctggatcactcatcatgcataaccatggttttatcttaaacaaacact
ttcaagggggcAAATTATAGATATTTAAGATTCGAgagaaaatctggaaa
tttaaggtgtctagattgctagaaagcgcatctaaatcatgaatcgttat
ataaaataaagaatttgaaagttgctgatttttttgtgcacctttacctg
gcatcccttgaattcgggataggtgcgcaccttggggttttctaaaaact
gtgaaaaggaaaaattcacgcgttcacgcaaaaaacagggcagattcacg
cattcacgcaatagaaatatggattttcacgttcacgcaagttttttcaa
ttcacgcattcacgcaattttttttcgattttcacgcattcacgcaacca
aaaaagcccattcacgcattcacgcaaaccgctgggggggggcccCTTGA
CAAAGTCTTCGCGCTCTTACATCTTGCTGAACAATAGTTGCAAGCTTCTG
GAAGATATAAAATTATTGAAGAGCTGTTGCCATGTTTGGTGGTCATTGCT
TTATGCTTGTCAAGGTCATTTTGCTCTTTGTATGTCCGTTGTTTTCTTCT
GCATGATGGATGGTCGCATCTCAATATTGATGGGTATTTATAGCTCAACA
TCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069482-exon-scaffold_500-1491911889:140803..141144 | TCONS_00069482-exon-scaffold_500-1491911889:140803..141144 | Clytia hemisphaerica | exon |
| TCONS_00069482-exon-scaffold_500-1510915933:140803..141144 | TCONS_00069482-exon-scaffold_500-1510915933:140803..141144 | Clytia hemisphaerica | exon |
| TCONS_00069482-exon-scaffold_500-1575043694:140803..141144 | TCONS_00069482-exon-scaffold_500-1575043694:140803..141144 | Clytia hemisphaerica | exon |
| TCONS_00069482-exon-scaffold_500-1491911889:142708..142908 | TCONS_00069482-exon-scaffold_500-1491911889:142708..142908 | Clytia hemisphaerica | exon |
| TCONS_00069482-exon-scaffold_500-1510915933:142708..142908 | TCONS_00069482-exon-scaffold_500-1510915933:142708..142908 | Clytia hemisphaerica | exon |
| TCONS_00069482-exon-scaffold_500-1575043694:142708..142908 | TCONS_00069482-exon-scaffold_500-1575043694:142708..142908 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_500 | supercontig | scaffold_500:140803..142908 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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