TCONS_00069690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069690
Unique NameTCONS_00069690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069690 ID=TCONS_00069690|Name=TCONS_00069690|organism=Clytia hemisphaerica|type=transcript|length=737bp
ttttaaaacacGAAGACTTCTAAAATGaGTTTCGTGACGCGTTTATGGCT
TTCGATAAAGATGGGAATGGTTTTATTACAACAAAAGAATTGGCCAAAAT
TCTAAGATCACTTGGCTTAAATCCTACAGAAAAAGAAATATGCAAGCTTG
TCAATGAAGTAGATTTTGATGGCAACGGAAAAATCGATTTTGTGGAGTTT
GTAAATATGATGCTATTGAACGGTGATCAGCTTGTGTGGAATGACAAAGA
CTTGTTGGAGGCTTTTCACGTCTTCGATTCAGACAATAAAGGTTATATAA
TGGCAGCAGAGCTGAAATACGTGTTGTCACAGATGGACGACGAGAAAATT
CGAATTGAGGAACTTCAAGACATGATGCAAGCATCTCAGATCGATCAAAA
ccgaaaaatcaatttcaacgAGTTCAAAAACCTAGCAAAACCTGACCTGA
AGATCCATTCACATGCGTTggcacaacaacaacaacataaccaaaacaaa
caaagtcTAAGAGCGCTTCGATTCTTGACTTAGATACTTTGAGTATGGTG
TACATATTATGGGAAAAATTATAATACTGCATCATCCAAATTAATCAAAA
CCGATAATTTAGTCCATTATATTTTCTTTGTATGAATTTGTAAGATATTT
CAAAGCAGTAACAATTGAAGATTgacctttaaaaatacacgattcaACAC
AGTCGCCTAATAATGTTTGCTGTAAAAATGATCAAAc
Run BLAST on NCBI

transcript from alignment at scaffold_506:228470..233350+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069690 ID=TCONS_00069690|Name=TCONS_00069690|organism=Clytia hemisphaerica|type=transcript|length=4881bp|location=Sequence derived from alignment at scaffold_506:228470..233350+ (Clytia hemisphaerica)
ttttaaaacacGAAGACTTCTAAAATGGTACGTATATGTTTATGATTTTA
TACGCACTTTTTGAAGTGGAACACCACATGGCCCAATCCGGCAAAATTTT
TAGTTATCAAACGCTTGGTTAGGATATGGAACAATGGGAAAAAGAATAAA
CCTTCATGTTTGTTTAGGGGTTAAACCTGTGAGGAAGAGTAGCTGCAAAT
TGATCTTTTCGTCAACAGCGTGCGTTACATTTTTCGAGGACGGCATTTTG
TCGGCTTGGAAAGTAATctatctttttttcttctttcaggaACGAGTCAC
AGAGGAGCAGATAGAGGGTAAGACACATGGTTGATAGTCAGGGTACTAAA
AATCGAcatgtatcctggggtgggtggtgccaaattattacttttcatat
AGTATCGGCCTGTGTACTATAATTAGGGTGTAGGGTTCAAAATGATTCTT
TGGTTTTTGGTACTTTTATGGGGTCCAAAATGGACACTTACACTAGTACA
CATACTTACTTACTCTCGTACCCTgaaacctccccccccccccNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNccccccccccccccggggtagcCAATCGGAAAAAGCTATTT
tcagtggattaattttcgcaaaaCAGATACTTCCAAAAGACgattttaat
caaaattaatttaatcTAATTTTCTCGGGAGTTATCTACGCGAATCAGTT
CCTTTTTTCAActgttttctttcattttcctaggggtatTGACAGAGCTC
TTGGTTTTTCGcaagaattaaatttcgcgaattttcgaaaaaaactcgCC
AAAGACTCCCCCGGTAAATAAATCCATTTAAGCTGCAAAAAtgtaaatat
atatatttttttacagaGTTTCGTGACGCGTTTATGGCTTTCGATAAAGA
TGGGAATGGTTTTATTACAACAAAAGAATTGGCCAAAATTCTAAGATCAC
TTGGCTTAAATCCTACAGAAAAAGAAATATGCAAGCTTGTCAATGAAGTA
GATTTTGATGGTACGGATATGGTTCAatattccttaaaaatctgaataga
atattttttctaattaaaattttccaaaaatgaaagaaaaaataccccca
gatattcacccaaggattAATTGTGCCCATTTTCGAAGTCTCTAGACTGC
CCTTAAGTATTTGAGACACACCAAAAGAcgattctcagattctagctcaa
acgaagtttaaaaaatttagtcTGCTTTGTCAAGTTAAAAAGCCACTTTA
ACAAGCTGTAAAATTTCATTCGGCAAATTTTATAATGATAACACCCCCTT
TATCTTCTATTTAGGCAACGGAAAAATCGATTTTGTGGAGTTTGTAAATA
TGATGCTATTGAACGGTGATCAGCTTGTGTGGAATGACAAAGACTTGTTG
GAGGCTTTTCACGTCTTCGATTCAGACAATAAAGGTTAGTCAGTCAGACC
CAGTCAACTGAGGCTCTGggaaatatattctttaaaaaaaaaaagaagta
ttgtttgtgattgatgttgcagagtgctcaatgaaaaccagagccaagta
aaatattaaaatatatctttcatcacaaaaaattaaaagagtaCACTACT
CCGATTTCGTGCTACTGCACTTTTCAAATgtacaaaataaaattatttta
cttgATTGAAGACTGTAAAAAATACTtggggctagcttgctagggggATA
AGTGTTGAATAATAGAACCggggcagagctgataggttACAAATATTTTA
AGTTAAGTTAAAAGTCTATGCTGTGAGGAAGGTTTTGACCCCTCTTATAA
GGTTTTCCTTACCACCCCCCTGAAAAATACTGGGAGTCGGACCTCTCTGC
ATTCCATGTTTCGCCCATATAACATGATGAAGATGATATCGAACACTGGA
AGGCTGTCAGgattgataaccactacactactgagCCGATATTTAATAAT
AAGTAAGCTTTTATACATACATAAACGTAAACATTttggttttgataaaa
atatgatTCAGACCCAGTTAAAGAATAAGAAGAATGGTGTAAATatcatg
aaagaaaaaaacagatCTTTGGTAACCATTCTTTCCAATGACCAGACATA
catttgtctgtacacagacccagtatctacagcTAATTCCAAAATTCATC
GCCGTAGAGATGTCATTCATtgtcttttttgatttgagaTTCTTCAAATC
GACTGCTGCGATGAAGTGTTGgagagagaggggagacgataaGAGTTGTG
TTGCTATTAAAAAATcgtacttcatcgcagaggtctccgtacgggaattt
ttttattaaacagacaatgcgcacagagtgtacttaCAAAGCGATagacg
tgagatacactctggtacagagtagacATACATAGGTAAAGATTTCCATA
TCAGCATAGGAGGGCAAAAAGCTCTCCCCATAATAAAATacattaaccct
attagccccaagcttttttgactttggtatccccaggggggggtagaatc
taccaccctcgattttttttgatctagaagagctatggtcatgaaatttg
gtacagatgttctccatcatgaaacaaatttccaggaagaaaaaaaaatt
gatgacgtcattcaaaaaccgatgacgtcatcacaaaatttccacttGTC
GGAAAAAAGCTCGAATATATGGTTTACTAAACTGTCcattacaatcgaac
caataaagatatttagattatgtttaaagattcagaaagataaaaggttg
ttctttaacataattgccggttttgaaatttctgcgaagagtttttctta
aaatctatgctgaagatgagtaaaattttcaaaatttgatgacgtcataa
atgatgacgtcatcattttcaattttcttttttcaatttttcaaatttat
attgtcaatgtctatcacgtgtcaaaatttgaaaatgattgaataaatag
ttcaaaagttatcagcactttaaaattttgagttttaagcggttttagct
ggattttatgtcatgtttcacaataaagccataaaacctgatctgagcaa
cctatgaccctaaaattttgcacaagtactcttaataagattttgttaaa
agtcagaaagtttcaagttgtttaaaaaatttttctcaaagatattcaca
aaagaactccagcgtggtagattctacccccccctggggctaatagggtt
aaactgTATTTTTGATTATAAGTTGAATAACTAGATTCAAATAATAAGAG
TTTCGAAGTGAAGAAAATTCCCTTTGGGCTTTGATTCAAATGACTAATAC
CTGATGTAATACCTCTGAAAATGACAATTCTATTTCCTATATGTATGAAA
CAGGTTATATAATGGCAGCAGAGCTGAAATACGTGTTGTCACAGATGGAC
GACGAGAAAATTCGAATTGAGGAACTTCAAGACATGATGCAAGCATCTCA
GATCGATCAAAAccgaaaaatcaatttcaacgGTAAGATTTCTATACAGT
AAACTCATTTTACAAGTTCTttataataagaacaaactatatacttagct
ttaaaaagttaagaacatccgaactCTTGAATTTTGGACGATGCATTTAG
AGTTGCATGAGACAGGGATTTTTTTCTGAACCGATTATGTTGACAAAACA
GACTCGTTCAAATAAGTTACCTAAGGCAGATAGCGTGGATAGCCGGATTT
TTATTTATACcaataattttcaagaaaattttcaCTTTGATTTTAGTTGA
TTTTGCAAGTCAGGGATACTAACTGGCGAGGAAACTCTCATGATATGGCA
AAACAGACAACACCGACTTTTATTCCTGCTTTTATTAATCTCTTATCTTT
CTTATTATATACAGAGTTCAAAAACCTAGCAAAACCTGACCTGAAGATCC
ATTCACATGCGTTggcacaacaacaacaacataaccaaaacaaacaaagt
cTAAGAGCGCTTCGATTCTTGACTTAGATACTTTGAGTATGGTGTACATA
TTATGGGAAAAATTATAATACTGCATCATCCAAATTAATCAAAACCGATA
ATTTAGTCCATTATATTTTCTTTGTATGAATTTGTAAGATATTTCAAAGC
AGTAACAATTGAAGATTgacctttaaaaatacacgattcaACACAGTCGC
CTAATAATGTTTGCTGTAAAAATGATCAAAc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043394XLOC_043394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069690-exon-scaffold_506-1491911889:228470..228496TCONS_00069690-exon-scaffold_506-1491911889:228470..228496Clytia hemisphaericaexon
TCONS_00069690-exon-scaffold_506-1510915933:228470..228496TCONS_00069690-exon-scaffold_506-1510915933:228470..228496Clytia hemisphaericaexon
TCONS_00069690-exon-scaffold_506-1575043694:228470..228496TCONS_00069690-exon-scaffold_506-1575043694:228470..228496Clytia hemisphaericaexon
TCONS_00069690-exon-scaffold_506-1491911889:230036..230179TCONS_00069690-exon-scaffold_506-1491911889:230036..230179Clytia hemisphaericaexon
TCONS_00069690-exon-scaffold_506-1510915933:230036..230179TCONS_00069690-exon-scaffold_506-1510915933:230036..230179Clytia hemisphaericaexon
TCONS_00069690-exon-scaffold_506-1575043694:230036..230179TCONS_00069690-exon-scaffold_506-1575043694:230036..230179Clytia hemisphaericaexon
TCONS_00069690-exon-scaffold_506-1491911889:230484..230603TCONS_00069690-exon-scaffold_506-1491911889:230484..230603Clytia hemisphaericaexon
TCONS_00069690-exon-scaffold_506-1510915933:230484..230603TCONS_00069690-exon-scaffold_506-1510915933:230484..230603Clytia hemisphaericaexon
TCONS_00069690-exon-scaffold_506-1575043694:230484..230603TCONS_00069690-exon-scaffold_506-1575043694:230484..230603Clytia hemisphaericaexon
TCONS_00069690-exon-scaffold_506-1491911889:232523..232651TCONS_00069690-exon-scaffold_506-1491911889:232523..232651Clytia hemisphaericaexon
TCONS_00069690-exon-scaffold_506-1510915933:232523..232651TCONS_00069690-exon-scaffold_506-1510915933:232523..232651Clytia hemisphaericaexon
TCONS_00069690-exon-scaffold_506-1575043694:232523..232651TCONS_00069690-exon-scaffold_506-1575043694:232523..232651Clytia hemisphaericaexon
TCONS_00069690-exon-scaffold_506-1491911889:233034..233350TCONS_00069690-exon-scaffold_506-1491911889:233034..233350Clytia hemisphaericaexon
TCONS_00069690-exon-scaffold_506-1510915933:233034..233350TCONS_00069690-exon-scaffold_506-1510915933:233034..233350Clytia hemisphaericaexon
TCONS_00069690-exon-scaffold_506-1575043694:233034..233350TCONS_00069690-exon-scaffold_506-1575043694:233034..233350Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:228470..233350 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.19657	0.532553	0.381045	0.0906131	0	0	0.0808743	0	0.210406	0	0	0	0	0.0763085	0	0.0906197	3.47027	0	0.224231	7.22336	9.50498	0.0526247	1.6047	0.472665	0	0.184269	0.196657	0	0
Blast
[Close]
BLAST of TCONS_00069690 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.517e-36
Identity = 65/133 (48.87%), Postives = 95/133 (71.43%), Query Frame = 3 
Query:   27 EFRDAFMAFDKDGNGFITTKELAKILRSLGLNPTEKEICKLVNEVDFDGNGKIDFVEFVNMMLLNGDQLVWNDKDLLEAFHVFDSDNKGYIMAAELKYVLSQMDDEKIRIEELQDMMQASQIDQNRKINFNEF 425
            EF++AF  FDKDG+G ITTKEL  ++RSLG NPTE E+  ++NEVD DGNG IDF EF+ MM     +   +++++ EAF VFD D  GYI AAEL++V++ +  EK+  EE+ +M++ + ID + ++N+ EF
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM-KDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEEF 142
The following BLAST results are available for this feature:
BLAST of TCONS_00069690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM32.517e-3648.87Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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