TCONS_00069763 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069763
Unique NameTCONS_00069763
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069763 ID=TCONS_00069763|Name=TCONS_00069763|organism=Clytia hemisphaerica|type=transcript|length=862bp
gactcgaaatttgcgaaaaaagagaccctgaatgggactgaaattccaaa
attttctcaaattttctactttttccccaaattttccaaaaataggcacc
cgacgagggactgatttttctattttcgtgtttttgcgaccctaccaggg
actcgtggaggttaaaaaaggtaccctgaccagcggatcatccccgtaac
ccattttgccttagtacccccccgggcacATAGATTTGTTTTCATTAATA
GGAATGTTCTCCCATGCATAGCTTACACCATCCTCATCACTGTCTTCAGT
TATATCTGAATCCCATGTGGTCGTCAAATTAACTCCTCTAAAGTGCGAGA
CAGCTACTTTTGTGAACTTGAAAGTTTTCATGGTGACAGCTTTCTCGATA
AGTCCACCCCAAATAGATATGTTGATTGCATCTCCAGCTTGATCCACCAA
TTTCGCATGACGCACAGATTTGTTGTAACCATTTCTCATTATAGAACGTG
CTTCACCAATCCACTTGATTTGACCTTTCACGGTAAATGTTCCATCTGGC
TCTTCGTTTAATATGTCGCTTACAGAAATAGAAGTGAATACGGAATGGTC
AAATGGCAAATTTTCATGAAGCAGAGTAGCACTACTGCCCAGAAGCTCAT
TAAAAAAGATTTTTCCATTCTTTGTTGGTGAAAGTGCCTGGAGGTAAACG
GGTAGCTTTTTCGTCACAAGGTTTTTAAAATATCCAAGATCATACTTTTT
GGACTTCATGATCCTGATTTTTGAGGTGACAGTTGAGGATCTTTGGAAAT
CAATGTCGAAATAAATATTCTTCTTATCACTTTTGCTTGTGCATTCATCA
CCGATCTCCACC
Run BLAST on NCBI

transcript from alignment at scaffold_507:242981..243842+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069763 ID=TCONS_00069763|Name=TCONS_00069763|organism=Clytia hemisphaerica|type=transcript|length=862bp|location=Sequence derived from alignment at scaffold_507:242981..243842+ (Clytia hemisphaerica)
gactcgaaatttgcgaaaaaagagaccctgaatgggactgaaattccaaa
attttctcaaattttctactttttccccaaattttccaaaaataggcacc
cgacgagggactgatttttctattttcgtgtttttgcgaccctaccaggg
actcgtggaggttaaaaaaggtaccctgaccagcggatcatccccgtaac
ccattttgccttagtacccccccgggcacATAGATTTGTTTTCATTAATA
GGAATGTTCTCCCATGCATAGCTTACACCATCCTCATCACTGTCTTCAGT
TATATCTGAATCCCATGTGGTCGTCAAATTAACTCCTCTAAAGTGCGAGA
CAGCTACTTTTGTGAACTTGAAAGTTTTCATGGTGACAGCTTTCTCGATA
AGTCCACCCCAAATAGATATGTTGATTGCATCTCCAGCTTGATCCACCAA
TTTCGCATGACGCACAGATTTGTTGTAACCATTTCTCATTATAGAACGTG
CTTCACCAATCCACTTGATTTGACCTTTCACGGTAAATGTTCCATCTGGC
TCTTCGTTTAATATGTCGCTTACAGAAATAGAAGTGAATACGGAATGGTC
AAATGGCAAATTTTCATGAAGCAGAGTAGCACTACTGCCCAGAAGCTCAT
TAAAAAAGATTTTTCCATTCTTTGTTGGTGAAAGTGCCTGGAGGTAAACG
GGTAGCTTTTTCGTCACAAGGTTTTTAAAATATCCAAGATCATACTTTTT
GGACTTCATGATCCTGATTTTTGAGGTGACAGTTGAGGATCTTTGGAAAT
CAATGTCGAAATAAATATTCTTCTTATCACTTTTGCTTGTGCATTCATCA
CCGATCTCCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043439XLOC_043439Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069763-exon-scaffold_507-1491911889:242981..243842TCONS_00069763-exon-scaffold_507-1491911889:242981..243842Clytia hemisphaericaexon
TCONS_00069763-exon-scaffold_507-1510915933:242981..243842TCONS_00069763-exon-scaffold_507-1510915933:242981..243842Clytia hemisphaericaexon
TCONS_00069763-exon-scaffold_507-1575043694:242981..243842TCONS_00069763-exon-scaffold_507-1575043694:242981..243842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_507supercontigscaffold_507:242981..243842 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.907673	0.504151	1.11624	0	0.559104	0.818441	0.26718	0.85353	2.38829	0	1.68852	0.884898	1.81594	0.383216	0.979888	2.00512	0.718164	1.1381	0.694802	2.72624	2.60603	2.39868	1.38225	0	0.280241	1.49736	0.369099	1.81135	0.732062
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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