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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069818 ID=TCONS_00069818|Name=TCONS_00069818|organism=Clytia hemisphaerica|type=transcript|length=969bp
CAAATATTCTTGCAAATCTATTGGAGAATATTTAAAACAGCATTCAACCG
CAACATTTTGATGACTTTTCGCATCGACtttgtttcaatttcacaatAAA
AAAGTATTGACTCAAGATGATTGGAGCTACTCAATCAACAATTTTGACAC
GATCATTCAACCTTCGAATGATCTTAATCACATCTATTTTGACAATCGGT
CTATTCACCGAGATATCCGTCGCTAAACCGACAACAATAAACACCGACGA
AGATTTAACGACGGCTTTATATCAAACCGATATCGGCCGACAAATGATTC
GTCGACGCCAACGACGTAGCATAGAAGCGTGTTATGCTGAATGTAAAACG
TCAGAGAAAATTTGTTACGATAATGTAGAAAATGACTCATTCCAGGAGAC
CCTTGTGTGCATGCAAGCCACAGATGGCTGTAAAAATGATTGCGACGCTT
TGGCTGGCAAAAGAAGGAGAAAACGTTTCGTAGATGCATTGAAAAGTTTA
CACAGTCACCACTTGACGCTAGATTCTGAAATGCAATAATTGCTTACGTC
ATCATAtttgaactttttagaaatatatttttttgtatattgCGGCATTG
TTATCCGAAACTTTTTAAAACGTTGATCCGGGctaatatgaaaataattt
catgGGTGCCCACGCCCTTTGAACGCCTTTACCACCTTAAGTAATTTGGA
ATTTCTGCAGTGCTAAGCCATAATTTTCTAAGTTGAATGAAATTTACTCA
GGCTGTGGCTTTGAGAAGAAAAATTGTTTCATTCAATTTCAATATACAAT
TTCAATATATTTGAAAATCTGAATTATtctaaaatatatttatttataga
caaaaaattattaattaatttatgaaaatatatttatagttttgttaaaa
atatttctagaaaaagtaaaaatcctttgtaaaaaatatatacagtcact
ctgacctgaaaGAAGAACT Run BLAST on NCBI transcript from alignment at scaffold_509:35299..40518+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069818 ID=TCONS_00069818|Name=TCONS_00069818|organism=Clytia hemisphaerica|type=transcript|length=5220bp|location=Sequence derived from alignment at scaffold_509:35299..40518+ (Clytia hemisphaerica)
CAAATATTCTTGCAAATCTATTGGAGAATATTTAAAACAGCATTCAACCG
CAACATTTTGATGACTTTTCGCATCGACtttgtttcaatttcacaatAAA
AAAGTAAGTTTTCTCATTTCTTTTTACTGTTTTCTCGGAACATaaaatct
aattcaaattcaaattataatcttaacggaactaatttttgcgagaaCCG
ATTTTCGCGGAAGTTATTTTCGCGTGAGGATACTAAATTGGCGAAttttg
cggaactaattttcaagccaaaaaacgcgaaaattaattctgcgaaaatt
agttcccgccaaaattagtccCCTTTAAGGTATAAAACGTGAATCGAGgg
gcaaaaaataataaacagtTTTTGCATGAACTTATCTTTGCGAGCagcaa
ttttttaattcaaatccCTCAAGATTCAAGTACAAAAATTCATTATAAAT
CCGATACATCTTAGAATATTTATTCCGgtttaccttattggaactaattt
tcacgggaaCTATTATAGtccgcggtcgaaaaaaaaaaatcggaaatttt
tttcaaatttttcgataaaattggaaaaaaatgtatttCACGGGTTCAAA
AACGCTAAAATCAatttccgcgaaaattagttccagtaAGGTATTTGTCA
GGTGCTATTGCACCCACATCGAATCAAATGGTCACAGTATAGGGTAAAAT
CGAGCTTGAAAAGTCTGTTgattgttcaatttttttgaggGGATGAATTT
AGACGTTCCAGTCAGTAATTTCTAACTTCACTTTGTGGACTTTTATTGGA
ACAAACCTTACTATTCctttttttcctttgaaatgTCCTCTTGTTTTTCA
TCCGATAGGTATTTCTCCCCTTTCACATACATGATTTGAACCTAAAACCA
AATTTGGCACCTTTTGGCACCTTTTGGCACTGTTCGGCTTTAAAGAAAGG
AGAGGTGAAATGGTAGAAATAATTAAAGTTGCCATCATAATTTGACCAGT
TTTATAGTATTTCGCCGTAAACATTTTCTGCAAATGAATGTACTCCGCCA
AAGCTTAACAACCTTTGGGAAGTTCAAGGAAATGTTAGAAAAAGAAAGAG
TGGTATTTAAAGAGAAATTTAGCTGGTTGAAATTGTGCCGAGGGATTATT
TTGGTAATCATTATGCTTTTCTTCCCTCTGAAgtaatttttgtgtttttc
taaaaattaaatgCGCATTTTAAATCAAAGTCAAAGAGTTccacaaaaaa
acaaataaagttGCGGGCCATCTAATTTCGCCAGGGGTCCAAACACAAAG
GTCTTGAAATAGAGAATGAAGTCAATATCTACGTAATTCCCTACATGGGG
CCAATAGAAATGACtaagtgtttttaaaaacatttttgggcGGATCGGCT
TGTCACAAATTAATGTGGTTTAATTTCCTGATCATTTAATTCAACAGTTT
CAAAGTTAAAGGTCACACCTTtctccaaaaaagttgaaaaactaTGCGTC
ATTTGTTTTTAATTCCCAATGAATAACAAAGTAATTTTCAATAGGGGAAA
CCTGGTAACATTAATTATTTTCCGGGATATCAAAGATTTTGCGGTTATAT
ATAATATCATGATAAAAATgacaattaaaattaaaatgatgAAGCAGGGG
TTGCTCATATTTGAATTTGGGGCTGGGACACCTACAGTTCAAAATGAGTA
ATAACTTGAAAattagattattttttaatttttacaaactaaaaatagat
ttattactcaatttttgaagaagaagaaaattttgcggTGAATTTCCAAC
TGCTCCAAGTGTAATGACCCCATGGAGTTTTACACATGTTTTTTCTAATT
catattttgagcattttttttacttttcaaattttagattgttattcaat
tatatttttgattacCCAACCCTACTAGcatttatacgtttttttttata
agaacatccaaattttttgaagcctttggatgttgttaactttttgagtt
ttaagcctaaagatattcttaaacatgttcttattttgacaattttttga
gcatttttgcccatttttctaagaaccGACTGTTAAAGACTCGACAaaac
attaaaatgttcttaacttgttcttaacattttggccatcgaagccttat
gctcttattagtttgttcttataaaaaaacgtgtaattaccGTTAAAACT
ATTCGTGTCATGTCACTTGACTTGTGTTTATTCTCACAAAAAATAGTTCA
ATTTTATTCCTTAATTATTCTTTTAATGTGTACAATACCCTAGATTTCAT
TTATGCAAAATTCCTTCAATGAAATACCTTAGCCCATGAGCTGTCCTTTT
ATAAAAAGCTATGGCATTTCATTATTATTAGTTTTTCATAAATTGCAGGC
TGCCTCTGTACCTCTTTACaagaaacctttttaaattttactgtGGAGAA
TTATTAGTATCTCGACCAATCGAACGAGTTCTTTTAAAATACTTATGTGG
CCTTTCTTATAGAATAGGAGGAGTAGATCTCATAATAGAACTTTTAAATT
AATTTAAGGTCGTAAAGAATACCTACTAAACAATACAaaggtaataaaaa
taatagTTAATTATATCAAGGATAAATGGTgcactttttttaaacatcag
AGTTATTTTAAAAAAGCAGGAAATTTTGACTGAAATATTATAGATgagat
attttttatgaatgttTTAGTTTTAAAACTTCAGGAAACAGGAAGCGAAT
CCGAGggttgaattgaattttttagacattttattattttatattcaAGA
TTCTCTGATTGCTGTGTTGAGTTGCTTGATGCAATAAAGTTTTTAGTTGA
TCGAGGTTTGGTTTTGGTTTTATGGTGTGTGGCAAAGTCTTGATTATCTG
AAAGgctattcattattttttttgactcgGTGGTTGGAACAAAATACCTG
AGCATTTCATTAATAAGGAATTGACAATGTCCGATTTGTTTTACTTTGCA
tatttttggtgaaaactttggATATTAATATTGTACCAACCAGATTTGTC
ATTAgagatttgattttttgtgttagtggtcaattttgttttaaaaagta
agttcatgattctctaattcgaatataaaagtttcagtcccttgaagatc
gaactaGAGAGATCGAGTTGTAGATACGTAAATAttcaaaagacacgctg
attttgtccctgggacaaaagaagatttcatttttattggtagaaagaaa
aatggggtgagGCACGAGAAGGCGTTTTAGGTtgatgggatggagcatgt
cacattgcaccaacgcgataAAAACTTCTTGTGTCCCCAAGACTTAAGGG
TCCAGCCTTTCAGTACTTTTTCCGAGGCGAAAGGTGCTTGAAATTTGCTC
CATTTTACCATATATACCATCGTAAATTTAAGGATAAGTTAAACTTAAAA
CACTGGATTGAAAATTTAATAGTTTATTAAAGTCAGGTTACTCATGAGCT
TCTATAATCTTTAAAGCTTTGATTAATTAATCAGTGACTTAATGCCTTAT
AATACCTCTGTTAATGACTTTGTAATGGCCTATAATTGGATTAAGATAAA
gcaatagaaaaaaatgaatcgTTTACTTTATTAATCCCAAGCTATTATCT
CATCAATTAATNAAAAAAATGAAGCGTTTACTTTATTAATCCCAAGCTAT
TATCTCATCAATTAATTCAAGCCAAACAAAAAAGCGTTTCCTATGGCCCG
CTACGTGTGATTCGAACTAAAAATAGATGCGCTGTGTATAGGTGATGTGT
GATTTACTCCTTACTCGGTATGGAAAAGTATGGGAAATTTtgaaagtcat
tataaaaagggGATCTAAAATTAGCTTTTGGGAACACCGCCTTCTATTTT
GAGAAGTTGCACCGCTTTTGAGTTTCCGATCTTGATTCAATGTGGGTGCA
ATAAGACCAGACATAATACACCGGAATAAATATTCTGAGATGTTTCGGAT
TTATAATGAATTTTGCACTTGAGTCTTGAGGCATTTTGAATTTGGAGTCA
AACAATGTGGGACTCATCTTGAAAATCATagtataaaattttaaagactG
AGATTGAGATTATATCAAGCCCGgaaagctggcacacaacattgtttcaa
cgttcatctaatcaCACAACATGATATAACGTCCATGTAACATTaaagat
aaacgttgaaacaacgttgtgtaccagcttgGAGGGTAAGCTTGGTTTTA
ATCCATAACAAGAAAGGCGTGGGCAGTGAGAGTTAAATGTTTTTGACATT
ATTAAGAGATTATTCACGCTTTGACTAACCGTCTTCTTTCATTCTTTTCT
TCAGGTATTGACTCAAGATGATTGGAGCTACTCAATCAACAATTTTGACA
CGATCATTCAACCTTCGAATGATCTTAATCACATCTATTTTGACAATCGG
TCTATTCACCGAGATATCCGTCGCTAAACCGACAACAATAAACACCGACG
AAGATTTAACGACGGCTTTATATCAAACCGATATCGGCCGACAAATGATT
CGTCGACGCCAACGACGTAGCATAGAAGCGTGTTATGCTGAATGTAAAAC
GTCAGAGAAAATTTGTTACGATAATGTAGAAAATGACTCATTCCAGGAGA
CCCTTGTGTGCATGCAAGCCACAGATGGCTGTAAAAATGATTGCGACGCT
TTGGCTGGCAAAAGAAGGAGAAAACGTTTCGTAGATGCATTGAAAAGTTT
ACACAGTCACCACTTGACGCTAGATTCTGAAATGCAATAATTGCTTACGT
CATCATAtttgaactttttagaaatatatttttttgtatattgCGGCATT
GTTATCCGAAACTTTTTAAAACGTTGATCCGGGctaatatgaaaataatt
tcatgGGTGCCCACGCCCTTTGAACGCCTTTACCACCTTAAGTAATTTGG
AATTTCTGCAGTGCTAAGCCATAATTTTCTAAGTTGAATGAAATTTACTC
AGGCTGTGGCTTTGAGAAGAAAAATTGTTTCATTCAATTTCAATATACAA
TTTCAATATATTTGAAAATCTGAATTATtctaaaatatatttatttatag
acaaaaaattattaattaatttatgaaaatatatttatagttttgttaaa
aatatttctagaaaaagtaaaaatcctttgtaaaaaatatatacagtcac
tctgacctgaaaGAAGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069818-exon-scaffold_509-1491911889:35299..35401 | TCONS_00069818-exon-scaffold_509-1491911889:35299..35401 | Clytia hemisphaerica | exon |
| TCONS_00069818-exon-scaffold_509-1510915933:35299..35401 | TCONS_00069818-exon-scaffold_509-1510915933:35299..35401 | Clytia hemisphaerica | exon |
| TCONS_00069818-exon-scaffold_509-1575043694:35299..35401 | TCONS_00069818-exon-scaffold_509-1575043694:35299..35401 | Clytia hemisphaerica | exon |
| TCONS_00069818-exon-scaffold_509-1491911889:39653..40518 | TCONS_00069818-exon-scaffold_509-1491911889:39653..40518 | Clytia hemisphaerica | exon |
| TCONS_00069818-exon-scaffold_509-1510915933:39653..40518 | TCONS_00069818-exon-scaffold_509-1510915933:39653..40518 | Clytia hemisphaerica | exon |
| TCONS_00069818-exon-scaffold_509-1575043694:39653..40518 | TCONS_00069818-exon-scaffold_509-1575043694:39653..40518 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_509 | supercontig | scaffold_509:35299..40518 + |
Blast
The following BLAST results are available for this feature:
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