TCONS_00070029 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070029
Unique Name	TCONS_00070029
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	488

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_512:314717..319124+

transcript sequence

>TCONS_00070029 ID=TCONS_00070029|Name=TCONS_00070029|organism=Clytia hemisphaerica|type=transcript|length=488bp
GGGTGGAAATGTTTGgaaagaagacaaaaatatttcaaaagcaaaatttc
tttaaaaacatttttaaaacttaCTGAATATCTTAATCAACAATACTTTG
AATCTAGGAAGTAAGTTGCAAGCATNcaaaaagatttcaaaagcaaaatt
tctttaaaaacatttttaaaacttaCTGAATATCTTAATCAACAATACTT
TGAATCTAGGAAGTAAGTTGCAAgcttttttgaccaaaattttcaaacaa
taaaTGTAAAAATTCCCGCCCATTATCCGCCACTTGCGAACATTGGAAAA
CCGAAGTCAAAAACACGAGGGGAAAGATTCAGTCGCCATCTTGGAAGGAA
GCCATGATAAAAAATCTTGACAAGCAACAACTTTAAAAGGTTGGGATGCT
CAAGAGAAAACTTACTATAATGGATTCTACTTTCAGGCAGAAAGAACTAA
TGgaaaaacTATATGGTTGACCCTTTCCTCAAGACACC

Run BLAST on NCBI

transcript from alignment at scaffold_512:314717..319124+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070029 ID=TCONS_00070029|Name=TCONS_00070029|organism=Clytia hemisphaerica|type=transcript|length=4408bp|location=Sequence derived from alignment at scaffold_512:314717..319124+ (Clytia hemisphaerica)
GGGTGGAAATGTTTGgaaagaagacaaaaatatttcaaaagcaaaatttc
tttaaaaacatttttaaaacttaCTGAATATCTTAATCAACAATACTTTG
AATCTAGGAAGTAAGTTGCAAGCATNcaaaaagatttcaaaagcaaaatt
tctttaaaaacatttttaaaacttaCTGAATATCTTAATCAACAATACTT
TGAATCTAGGAAGTAAGTTGCAAgcttttttgaccaaaattttcaaacaa
taaaTGTAAAAATTCCCGCCCATTATCCGCCACTTGCGAACATTGGAAAA
CCGAAGTCAAAAACACGAGGGGAAAGATTCAGTCGCCATCTTGGAAGGAA
GCCATGATAAAAAATCTTGACAAGCAACAACTTTAAAAGGCAAGTATaaa
tgtaatgttttttttttctgttgcttttattgttctaaggttTTTTGCTT
TGAGATGCTTTCAGTCATGAAGAGTTTTTCACAGATTtgtctgtttgttt
ttgttttaaaagctATGTCGAATGTAGNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGAGGAAAG
TCAAATTaatttctatcattgttgatCTCTCATGCATATAATACTGACCG
TGTTTTATGGGAAGTACTTGCTTATCTCTGACCGTGGGTATGGTAAGAGA
TGAAAGGTTCAACATGATTCTCTTTTATCAgaagttaaagaaaaattatg
aacttttagtcaaaatattttaatatattaGTTAAGAGGAAAGTCAGATT
aatttctatcattgttgatCTCTCATGCATATGATACTGACCGTGTTTTA
TGGGAAGTACTTGCTTATCTCTGACCGTGGTTATGGTGAGAGATGAAAGG
TTCAACATAATTCTCTTTTATCAgaagttaaagaaaaattatgaactttt
agtcaaaatatttaaatatattaGTTAAGAGGAAAGTCAAATTGATTTCT
ATATCATTGTTGATCTCTCATGCATATAATACTGACTGTGTTTTATGGGA
AGTACTTGCTTATCTCTGACCGTGGTTATGGTAAGAGATGAAAGACTCAA
CATTGCCATTAAATTTAACAACTTCTTTAAATCTATTTATTATCTATTTC
TGGCTCATTTCTGTTTGTTTTAAAGTGTGTGCTAACCACTTGGGAAATTG
TTTCTTTgcattaaaaaaaaagcaaaaggaCAGTATAGATATAGATGTGa
atttttactcaaaatttcaaaaatctgaaaacaagtttttatttcatttc
ttcAGGTTGGGATGCTCAAGAGAAAACTTACTATAATGGATTCTACTTTC
AGGCAGAAAGAACTAATGGTAAGCAAAAGAAACTCTTTTCCTATTTTGTA
TCTTGGATCTGGGCTGTCAAATTTTATGTCCCATCTGTACAGTacactac
aatcatggacaaaaggttgtagacaaatgaaatttcagtgaaaaattatg
agaaatagagcaaaatgacacTTCGATGAGTCTGAAAGGggagggaagtt
aagaaaaatacttttgaagtcgttgcattacttttgaattgcttttgagg
gaaccacaagcaaaaaatcagcgttttgatactggtgtaagccagttaat
caagcccttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNcaagcaaaaaatcagcgttttgatactggtgtaagccagttaa
tcaagcccttgtggttagcccttgtggttagactgcagtgggtgactttg
aaagacttgaTAGGTtaggaaagcacccagaacctcttggaaacttgttt
ttgatcgatattgaagtattttgcaaatattgcagaagtctacaaacctt
ttttCCATGACTGTACAAGACATTTTAAACCTAACTTCGCCAATCATATA
AACTAGCCAATCATTAGGCTGTTAgtaaaatgtttcagttataggTAATA
AATGCTTtacttcaattttcaggaaaaacTATATGGTTGACCCTTTCCTC
AAGACACC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043598	XLOC_043598	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00070029-exon-scaffold_512-1491911889:314717..315105	TCONS_00070029-exon-scaffold_512-1491911889:314717..315105	Clytia hemisphaerica	exon
TCONS_00070029-exon-scaffold_512-1510915933:314717..315105	TCONS_00070029-exon-scaffold_512-1510915933:314717..315105	Clytia hemisphaerica	exon
TCONS_00070029-exon-scaffold_512-1575043694:314717..315105	TCONS_00070029-exon-scaffold_512-1575043694:314717..315105	Clytia hemisphaerica	exon
TCONS_00070029-exon-scaffold_512-1491911889:318372..318434	TCONS_00070029-exon-scaffold_512-1491911889:318372..318434	Clytia hemisphaerica	exon
TCONS_00070029-exon-scaffold_512-1510915933:318372..318434	TCONS_00070029-exon-scaffold_512-1510915933:318372..318434	Clytia hemisphaerica	exon
TCONS_00070029-exon-scaffold_512-1575043694:318372..318434	TCONS_00070029-exon-scaffold_512-1575043694:318372..318434	Clytia hemisphaerica	exon
TCONS_00070029-exon-scaffold_512-1491911889:319089..319124	TCONS_00070029-exon-scaffold_512-1491911889:319089..319124	Clytia hemisphaerica	exon
TCONS_00070029-exon-scaffold_512-1510915933:319089..319124	TCONS_00070029-exon-scaffold_512-1510915933:319089..319124	Clytia hemisphaerica	exon
TCONS_00070029-exon-scaffold_512-1575043694:319089..319124	TCONS_00070029-exon-scaffold_512-1575043694:319089..319124	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_512	supercontig	scaffold_512:314717..319124 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.69392	4.90919	1.56348	3.36109	17.3899	9.704	15.9495	16.301	10.8209	9.78987	7.95541	9.13992	4.909	5.10579	4.34011	4.58141	5.26789	4.37219	0.744634	1.85826	3.63038	2.97236	7.81136	7.26823	12.9819	13.3743	1.95613	2.24352	1.08357	3.54529

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00070029 vs. Swiss-Prot (Human)

BLAST of TCONS_00070029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00070029 (transcript) - C. hemisphaerica