XLOC_001984 (gene) - C. hemisphaerica

Overview
NameXLOC_001984
Unique NameXLOC_001984
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000030:299915..310932+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001984 ID=XLOC_001984|Name=XLOC_001984|organism=Clytia hemisphaerica|type=gene|length=11018bp|location=Sequence derived from alignment at sc0000030:299915..310932+ (Clytia hemisphaerica)
TCAGTACTGCGGAATGCTGAACTGAATTCAAAGGATTGTTACAACCTTCA TTCGGATAATTATTCAAAATAGATAACAATAGATCAAAACCAATAGACAA CAACAAACAGAAGCAAACAAAACACTAATCAGACTTGAAAATGGCAAAGA ATACAAATAATCGAAAGCAAATGGCAGTTCACGTTGTTACAAAGCCAGAA GAAGAATTGGAGTTTTATGTTGATGTAAGAcactttaatttcatttttct ttttggacctaccccggtggggtggaggtcctataaattaacctttgttc gttgGTTTGTTGGTtggttcgttcgttattagctttcctcctgattggct cattagttgtttcaggttttttgcacaaagatgtaaatacaatgttctta gttaaattactcaattttttttttgagatagatgtttttttttgctcaag agggcttacttttgaagaatgtgtgtgtttagacatgaaattttggttgc ttggcgtgtttttatagaaaaactggccaaatccgatatttatttataag cacattatcaattacttaggtattagcttttctcaagattggctctttga ttttttgcacaaagatgcataactataaaccctcggaTGTGACAGAAAcc gactttcaaaaaaaaatttggggcgcaaatttgggccaaaaaacggctaa aaaatgtttttttttggactttgtgaaaaattggatcattaactttttct gattttttgcatgaaagtagggttaccatcataggtaaaagatggctcaa gtagattttttcaaaaaaactttgttAGCTCATAAAACGCTTGGCTCATG TTTATCTATAATCTATTAttgataagcatacatcaatgttcttagccaat tcaatcaattttttaatgagatagatgtttttttgctcacaaaatcttga atatgaaagaatatttcaagagcatgaaattttggtttctataaacgttt ttttataagaaacaaacgactaattttaatagatcgtcactatttgtgtt ctgaatgattgtttaatgatcacgctcacgtagataccaattatatatgt gttaaatgcataaccaggtaggtccataaaagtatcacttgtgaAATTTG CTTTATAGTTGAGGGCTAAGCCTGGGGTcctgtgacatcttttttacgac ctagccatttttagtctattccaaaaaacaatatattacaagatattttt gagagggaagATGTGGATTAGGCCCGGTAAAAcgttttatgaccaaaata gtgacgctaTATGCAAAACTGCAAGagaaaataaggggtagagaaatggc tgattttcaaaagtcaaaataaaagaagaagattgGTTGTATATGTTTTA AtacaaaattaatgaaaaacttGCCTGTGAGTATAtgatatatggtgaag atcagagatctgacctcaaggagagagagtgttgaaaatactaaataaaa taaagatgaaacataataaggcactaatatttttataattatatataTAA TTACCTCACAAATATGAACCGTTTGTGTCCTTTTCCTTTAGAAAAACATC AAAGGCcaagaattgtttgatttggtttgTAAGGTGATTGGTTTGagaga aaattattattttggtTTGCATTATGAATGTCCGAATCAACAACCTCTCT GGTTAAGAATGGACAAGAAGGTATAATTCATGATGTGTTAGCTCAAGGAT TTTAAACCTTATAACCAACTTCAACAGTCTTGGAAtccctgaaaatgaaa aaaattagaacTCTGTTTGTGAAGTTTCCTAAAAGTCAGTTTTGGAATTT TGTGACACACACAAAAAACTTGAAGTAATGAATTTGACATTCTACATTGC TTTCATCTAAACCAAGAAACTGTGGAAATTTATATGTTCCATAGATAATT TGTTTAACTGTTTCTTTTGATAGGTCAGGAGTGAACTTGGAGAACAAAAC ATGAGCAATATCAAACTTTATCTTCAAGTGCAATTTTATCCCATTGATGT TGATACTGGTATCATTATGGAACAAACTACTCATCTATTCTTTCTTCACG TCAAATCTGAGATTCTCAGCGAAAGTATATACTGCCCAACTGAGGAATCG ATCTTATTAGCATCTTATGCTGTCCAAGCTAAGGTTACtttcaaaaagtt gattttctttgaaCTATTTTTGTCATTTGTCCCAAGTTGATTCTTCCATT GCAAAATGTAACATTTTGATAAGGCAAACGCATTAACTTTTTTAACTTCT TCtccaatttttggaaattttttctttgtgccAGCCAGGCTGATTTTGAT TACAATGATCCAATctctttttttatcttattCCATACAATTCGTTTACT TTTATTGTTTTTAGTATGGTGATTTTGATTCAGACattcataaaaaacat tttctggcAAATGACCAACTGCTACCTCAAAGAGtaggattgttttttca atCATAAGATTTGGGATAGTGTTTTTTGCTTTCAACTATGAACTATCCTC AGCTGAGGTTTTGTCAAAGCAAACTGAGTTGAAATGAATTGTAACTTACA AGCTTCAAAGTTTCTCATGTACTTCCACACCTTTCAACATATAGATAGGC CTAAAAGTTATCAAAGTTAAAAGTTGCAGTGGTCATGGTGTAAAAGAAAG ACACTGAAACATCAAGAATgcatgaaatgaaatttttagttttcacttcT ATTGCATTGAAACTTTTTATTGTTACAGTCTGTTACATAACCCATataat tatttcttttgttcttattCAGGTGTTAGCGCAATACAAATTAAGCGCTG ATGAGTGGGAGGAAAGAATTGTCAAGTGGTATTCACAACATTGTCAAGGT CTTTCAAGGTATCTATCTAATTGCTAAAGTCCTTTATATGTTCGTTGTGA TTTCCACAGAAATTGAGCTGGTCTATTCTTCCAGGTGTATTTTGCCATCT AAgaccatattattattattattattaacatgaaaatttcaaggttTGTG TAGCCTGAGACAACTCCAGCACAAAAGCCATTTAAGATGCTTAgttgaaa ttcatttttgtcATTTAATAATAGATATCAAGCTGAGATGGAGTACCTCA AAACAGCACAAAATCTCGAGATGTATGGCATTGGATATTTTAGGATCCAG GTTggttaaagtttttatttttacattacTGTTCCTGTATCATATCAGAC AaaatgtttcatatcaggactgCCTAttttatattgtgctgatagaagca aaataatgtttttcttttccttctttctgaccaatcttgctatagatccg tgtcaattcaatatcaaaaacctTTTCTCTTTGACTTAGATAAAGCAAGT CCTCACTGCAAAATCTTGTGctttttctgaaagaaattactttatttaca tgaaaataaatatggaagtatttaacgaccttgaaatttgcacgatctga aattaacacgaatttttctgcaaggacaccacggctggttttaattaagg gggtttttatttacacgaaattttcaattcgtgttaaatacttccatatt tattttcatgtaataaggtaggTGAAAGCCGATTCGCGAAAATTCGCTAC gcgaaatttttagattctCAATTCGACaagaaaattaatccacttttAAG GCAAATATTCTGATTGTTGTTTATATTCATAGAATGAACTTGGAACAGAA CTATGGCTCGGTATACACGCTACTGGGATAAATATTTACGAATCGGACAA TCAGCTCATTCCTAAAGTCTCCTTTCTATGGACAGAAATAAAGAATATTA GCTTCAAAAATAAACAAGTAAGCAATGTTCAAGTTGCTCTAATAATGAAT CCTAATGGTCAAACAATAAATCTTATAAAGTTGGTCCAACAGAAAGTCAT ATCATTGGAGTCAATATGACCATGAAATGGACTATGGATATGTCACAGTC CTGTGAGctattactttaatcgtagaaattttagcgagactaatttaagc gttttagcgagttttcccaattttcgctaaaataaatctcgctaaaacaa cCCGAATCGACAggtcgctaaaatttatccgcgcgacaTTTCTGGTtata tattgccttgatacatttttatcaacaggaagggtttcagtgcaaagaaa tgctagaaaacgaattcagtcaataatataatatgagtattcgctaaaat ttatccacgcgaaattttttgaaatcgtgattcgctaaaataaatctaaa aaaaaatcaagattttcctgactcgctaatatacgctaaaattagtctcg ctaaaatttccaCGATCCTTTGCTCGGAAGAATCAGTcttgattttatat ttttatggaATCTTTTATCGGATTTGAAAAGCTTGCATTgggtttttcaa gaaaatattcGTACCTGGGGAGGAGGTttggtggaggatatagtgtctgg GGGtaatgaaaaatctacaaaatttttcttgtccgggggtaaacttgctc tgtttgggggtaactttgctctgtttgagggtaatctTGAATGTCGAGGG GGTAAACTGATGCTTTTCCGGGGGTTAGACCTACCGTCCGGGCGGAGAAT TTCCAAAAACGTCATATCCTCCGCCCCTCATGCTTaatttctttctggaa aagcccactGTACTTAAAATACTGAGCTCAATGTAATAACCCAAAGACTA CTTGTTTCGTTTGTGTTCTTACAGATTTGGATACAACCGATGGATAAGGA AGTACAAGATTTTCATTTCGTCTCGTTAGATGTCGCGATCAATAGAAAGG TTCGCTTCTTTTCCTTTCATACTTGTAGTGATTTCTACTACTTGCCATGA ATAACCAAAAATTAATTCGATACTTTAAATTATATGATATAGTCCGCTCA CATTTGTTGATTAATTGTAAATCAATTTCTACACGTGAATGACTACTTAa gactcaaaatttttttgctactaTTATTAAGATCGGCGATTATTTTTTAA CTATGGTTGTAAAAAGTGATTTTGAGTATACACTGATACTGCTTGATACA GTCTTCCTACAAAATATTATTTACCTTGGAtaagaatttcattcaattcT TTTCTCAGATTTTGTTGCTAAGCAGTGGTAACCATGACCTGTACATGCGC AGTAAGAAAGAAGATACAATGGAAATCCAGATAATGAAATCACAAGCGCA AGATGCCAGGGAGCAGAGACATGTATGTTCTGATTTATTAACATCACTTT AGTTTCTCGTCACCTTTCGTCACTACGAAAGACGAATCCTCAAATTCTAA GTGTAATATTTTACTGTTTCGGGAGCTAACGGCTAACGTTAGTTTGTCTT ATCGCTTGAGATTCCTAAATACACACTTCTCGAGATAAATCAACAGCATT GCGGGCCTCGTTTCCAAATGGAATTATTTCTTCGAACGACATTAACATAA TGTTTTCCCAAAAGAGAGTTTAATAACTGTGCCACGgtcctttttttaaa gtttgcttaagaaaatcgctagttcaaactttaaagactTATATCTccag atctagaaggagttagaagctcgttgatagttcgttggatagcttagagt ctcttctttttttttcgagaAGAGCGTAACCATTGCAATTGTAAACTAGG GCAAATGCGAAATATTATTGAAATAGTATAAGTTTATCACAATGGGAAAC CTTTAAAGGAGTTTTCTGTTTGTAATGGGATTTTCTTAGAGTCTCTTTTC ATAATAAGCGACCGTGCCTTGTAACttatttgaaaatcgaattgtCTTTT ATAAACCCATTTATAGAGGGGACAGAATCGGGCCCGTGCCTTGTAACTCA TTAAAAAATCGAATGCTCTTTAACCCATTTATAGAGGGAACAGAATCAGG ACCTTGCCTTGTAACTCATTTGAAAATCGAATACTCTTTTAACTTCTTTA TAGAGGGAACAGAATCGGGCCCGTGCCTTGTAACtcatttgaaaatcgaa ttttcttttaaaaacgcATTTATAGAGGGGACAGAGTCGGGCCCGTGCCT AGTAACtcatttgaaaatcgaattttcttttaagaaccCATTTATAGAGA GAACAGAATCGGGCCCGTGGTTAGTAACTCATTTGAAAATCGAATGCTTT TAAAAACCCATTTATAGAGGGAACAAAATCGGTTGTACAAAGAGATTCGA CGTCGGATAGAAGAAACACAGGCAAGGATCGATATGGAGAAACGACTGAA AGATTACAGTGGTCTCATTGATGAATACAGGAAACATTTGGTGAGAActt cttgactttttctttgctttCCTTTTTTCCCACTGATCTTTCTTTATTgt acttttccaaaatttccaaaaatgaaaaaaatctaagtttcaaactattg gacctgTCCCAAACTACCCCATTCTAAGACTGGCTCTTAAGGTGTCGTGG TATCCTCATGTTATCAAAATTCAAGAGTAGACAGAAAGTCAAACTTCGTG AATCTTTTTATCAGTACAGTtcgctctctctaattcgatcttcaagagac caaaaattttattaaaattagagatagatttgaattacagagagtgATTA AAAAACCATTTCCAGCTGATagaaccaatattttagtttaaattagagaa agattcgaataatagagatttGAATTAGAGGGAGTCGACTGTATTCCACT AACCTTAACCTCTATTCATATGATTTGTATCTTCTATTATCAGCTTTCTG ACAGTtgctgatagcgctagatattctctggcgtctatcagtaacgtaaa taaagcctgggatataCGGGGACGAGGTTAAATGAAGTActatttgttgt tgttgttttttgtctTCCAAAATGTTAAGTTTTATAAATCTTCTGTTTCA GCAAAAAGCGGAAGAAACGACCGACCTTTTGGCGGAGAAAGCCCTCGTGG CGGAAGAAGAGgcgaaattacttttaaagaaagCAGCCGATTTTGAAACG GAAATCAAATCGTTACGACATGTTTGCAATCAAGTATGCtcaccttaagt ggattaaatttcgcttGGATTATTaatcttgcaaattttggccattttcg cgaaaattagtcctcacgaaaaattttaaatccgAAATgggattttccag aaaaaacttttacccccactgttgaggatattgatttttcaaagtatcGA ACCACCGATATcttactttattagtaaagatatcctctcttataaagatg cttaatcccctggatatcgtattttttaattgaaaagacacttaacccct tggatatccactcccttgtagatattcacccccctggatatccacttttg aacaaaaatatttaaccccctggatatccgatatcctcaacagagGGGGG CATggactatttttggaaaagtccATTTTGGCCAAATCCCCTAGGAAATA TAGAAAGAAGTTAGGTGAAAAAAAGAGGTCGATTCGCGAACTTGTGTCCA CGTGAAAACTTTGGATTCTCAATCCACGAAAAAAAAGTCCATGCGAAAAT TATTTCCCATTAAAAGGTACTTTTTTGTAACGGTTTTTGTCTTTCAGATC CTTGTTTTAAGCAATGCAGATAATATTCAATTAGCTTTTTAATATTAGCA AATAAGACCCCTTCTCAGCCCTTTTAGAAAAAGGTGAAGCAAATTATGCC AAACTTCAGAGATTTTCTATTGATTATCAATTGCGAGATGAGCGTCCCTC TATTTGGAGATGACTAAAGCGTAGACTTTGCCTTAGGAGGTTTCTTTCTT CCTCGCTAAATTAAGAACAGACTGACTGGACATTTAGAGTCGaaatttta cgtggatagcccagtaatctaggactttaaGGTAGTCGTTCGATTGTTTT TAAGGGTTCCACGGCCAGcaggctcggctatctatgaactgaacggaacg tTGGAAGGGGTTGGGATTCGAACCATGAAATCCTGACTTGAGACACTGAC GCCTTTGACAACTTAGCCATCACTCTATCACTCCTgtattatttcttttt cagaaagATGAAGAGAAAACATACTTAGAGTCACACATTCAATCTGCTCA AATCAACATCCAACAAATCCTACACGAATCCAACCGaaggtaccttaagg gaactaattttggcaggaactaattttggcggatttagacgaaattcgcc aaaattagttcccgccaaaatttaaaaatttcgctattcgccaaaataag ttcccgccaaaattaattttttttgttttttgcttaaatgaaccctgaaa ttcatcaaagttgctcaaaataaggtaaggcaaccttgcgaaccgtagtc ggatgctctaccactgcgcCACGGTTCGCTTGCGACGAAAGTACACTCCT GACCAGGGAACGGTTAATGGTCAATggtaaaataattttcagtatGATTA GgacattgtattttttttcgttttacaGAGCTCAAGAAACTGTACTATTA AAACAAGAATTAGACAAATCTCGGCACTCTGAAAAGATGGCCACTGAAAA ACTGATACAAATATCCAACAACTACCAAAGGGTAAGCATTCTTGGccttt ttacattgaatttaaGGATctaattttagcgggaactaattttagcggga actaattttcgtggtcaagaaaaatttaaaaaaattgcgtTTCGCGGGAA TTTTCTAgggatatttcaaattttttgatgaaaaatagccAAATATGTAA TTTGCGGGTTCTAATTTTCACAGTTTTACCGAGAAAATgcgaaaaaagcg aaaatttaGTCCCTTCTTAATTTTGAACAGCATTGTAGAGTATATCATCT CGAAGCTACAATCGAATCCGTAGACATTTTGATCACTTTGTGATTGATTG AATGTTTCTTGACCGCGAAAATTAGATAGACAAGCCGGAAGAAATGATCA AAACCGCTTGGCGACGAGAATTGGTAAGGAAAATTTTTAGCCAAGTTATA TATTTCTAACCCAATGTTTCGCTTTTTTAAAATACCAGGCTCCTCCGATC CAATATTCATCATACGCCCAACACCAACAACCGCCCCAACTTCAGAAAGT GCAACAGCAGCCTACACAACACGTGCAAGGTCCTCAACAAGTTTCACAAT CACATCTGCATTACGGAGGAGCGCCTAATTATGTGGGCGGTGACGGAGAA GATTTCACAATGTCCGTACAACTTGAGAGGTAGGGATTGGAAATTCTTTT CCCCGTACAGACCGGACGCTATTTTTATGGATTCTATTACGTTAACCCCA TCAAATTTTGAAGACAGACAAGGTTtctaccattgagtttcaagcccgaa aggctagaggcgagactccgggaaatgaaaccatttaccttaaaggaaga aattttggcgagaatttaatttggcggatggacaaaaaagttttttcaga gggaatttaatttggcggatggacgaaaaaactaaatttggcgggaattt aatttggcggtcgcttaaaaatttaaccttaNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNtcaaaatgtttaatttggcgggaa tttaatttggcggatggcggaaaaaagaaattttggcgggaacttaattt ggcggatttcagccaaatccgccaaattctctttccgccaaaatttcttc ttttaaggtatttcccatccagaacgcccgcgcgtagtttttacacaaac gccggattgaaactaaaatctatcactagatttgaaaaagtgtagtcctc caaaacaaaggaaccgctagatacaatctgtcgtcatgattacggcgcgt tctatgcgcgttttggatatGAAATAAGTGATTtcagcccttcgggcttg aaactcaaaggTTTCTACTGAGGTCTTTCAGAAAAGATGGCAGAATATTT TTACTTCACCTGTCTGTGCTCGGAAATAATAGGGTAGCTCTATATAGTTT TTTATATGAGATATATGTGGTTTGTACTCGTGTTTTATAATAGGGTTGAG TACTTGGAGAAAAGCAGACATCTCGAACGACAACTCACCGAATTGAAAAC TGAAATTGAAGGATTAAAAGTAGCTGGCAACCCTGATATTCTGGATCGAA TTCATCTCGAAAGTGTTGGAAAAGGAGAGACTAAATTCTCAACTATGCAA AAGGTATTTCGATctttttattgtaattttaaTTATTCATTCATTTTGAA TCTATCAATTATTACTCCAAgccaattcgcgaaattttgtcgacgctaaa attttgaattctcAAAACGCGAAAAGGCGAAAATTCATCCACTCAAGGTA AAATGCTATCACATACGCAGATTTGTTGGACTCGTCGAATTCCAGGGCTT TTcctcaactttttcaaaagagtataaatgTTGAGAATTGACCGTTGACT CTAAAAATTTccctttctttttttcagcttcAAGCGGCTTCAACGAACTC TCGTGTTCAAGTTTATCAAAGATTATAAAACAACTCCAGCATTTAGTCTA ACcatcttatttttaaaattttgatcaccCCTGTCTCGAAAagaccatag tccgtataagaAACCACAGTCTGGGTAGActgagtcgtttataatgcgtg taatactaataatacgggatttagtttgtataaactaaaattgttccctt cattactttttgctttatttctactatgtataaattagtcgtctaggtTG CTAGACTACGGTCTGGGa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003553TCONS_00003553Clytia hemisphaericatranscript
TCONS_00003554TCONS_00003554Clytia hemisphaericatranscript
TCONS_00003555TCONS_00003555Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00003553-proteinTCONS_00003553-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:299915..310932 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.27 4.94 1.61 1.59 11.04 8.65 7.41 7.28 4.59 6.42 7.01 4.05 7.37 7.98 5.02 5.6 8.81 7.96 5.65 6.57 8.63 8.04 6.1 6.85 7.97 9.07 4.12 3.2 3.8 3.56