XLOC_002093 (gene) - C. hemisphaerica

Overview
NameXLOC_002093
Unique NameXLOC_002093
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000031:699143..709442+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002093 ID=XLOC_002093|Name=XLOC_002093|organism=Clytia hemisphaerica|type=gene|length=10300bp|location=Sequence derived from alignment at sc0000031:699143..709442+ (Clytia hemisphaerica)
ACATAATAGCCTATTATTGTCTTTTTTCCACCGAATCAATATTTGATCAA
CATCTATTTTCTCTTAACCTAACATGAACAATAGCGTAATCAAATATTCA
GCATTTTAAATTCCGAGATAGAAACATAATTGATTAACCAATGAGCGTTG
AGGGATGAAATCACATGTCTATAGAGGCTTTCAAAAAAGCACTATAGATT
TGACTTAAAGATTGCATGACAACGAGAGTGTAGTTTTGATGTTAAGAAAC
TTCAGTAACATCATAAcacataaaaaaagaaaagtctcGTTTGAGTTgag
gattgtttttttttgtgttagAGAGAAAGAGACGCTTTTCTTGAAATGGT
GTATGAATTTGCGCACACCATAACACACTACAAATACTGCACACTCTCTT
ACAAACACTGAAAAGTACTGCACAAGAGAAGCTACACCTCTATCACACAG
AGAAATTTTATATGTTACAAAAGAGAAGTTGAAGGACAACAAACTTGAGC
ATTTTTCGTTAAcgtgaagaaaaaagaagagagaatattttaaaaataaa
agagctctattacacaaaaatataaaggaaaatttataGATGTATGTATA
AACTACTATTAGAACAGAGAAATTAAATATAAGAGATAGAGATACACATT
TATAAACAACAATGCTACACGCTGAAGAGTACTACGCACCCACCGATGTC
GGACTAAAGAAAGGCGAAGCCATGTATCAAATGGCTAACACAAACATTTT
GCAGGAAAACATGGGGCAACCTTTAAACGACAAAGTTGGTAACACAACAT
TATTAAACGAAATGGGTGAATTTAAACCTATGAATGGACAAAATGGATCA
AGTAATATGGACGAACAAAGAGCTCTTCAACTTGCTTTTGAACTTTCTAT
GTTGGGTTTGACAAGTGAGGAAGAGATGAGTTATAATGAGTTACGCATGA
AAAAATCGATGAACATGACGGAATGTGTTCCAGTCCCTAGTTCGGAGCAT
GTGGCTGAAATCGTTGGCCGTCAAggtatgttttcatttttatttcattt
aatttgGCTTTGTTTTGGATGACATTCTACGATTTTTCTTTTACTGAAAT
TAAGATTTTCATTCTTAAAcgtttcagattttttttatgaatcttAGCTT
TGTATACAGCAAGGCATGATTTTTGATAGATTTTCTTCTAAAAGTTTGAA
TGTTGCTATTTCTCAATGCGATTGCCACTCCCCGCTGTATAttcaattct
gttttgttttttgttgtgatttttttgCCGCGCTTCTTTCGTCGAAAacc
ttttgtttcaattttttaaacagaCATTTGTCCATGCTGAACATAAGCGC
GAGAAAGTTTTGACCTAGCGTACATAACTCTACTGCGAGCATTCATAAAC
AACATTACTTGCAGCTTTACTACTCAAAAAAGGCCATGTgcgtttttgtt
tattttttaaagttttcccgcgtacaatttttttctttgaaagtttttgt
ttacttttcacgAAGACGTAATAAACATTTTATACTTTTTCTCACACAAT
AATAGACGATCAATATTTGTTTAGAGTGAGAGAGTACTTCTTATAAAAGC
TGAGAAAAATAGTTCTtcacaaaaaatataatatcagTAATTTTTAGCAA
ACAAATCTCGACGAAAGGATAACTTAGATTAATCCTTCTCAATTAATTTA
ACACATACTTTCACACGTAACATAATTTTCTATGCTAAAACAATCTAATT
TTCTTATCTAAACATCAATCActagaaaattataaaaaacggAGAAAATT
CAACAATCTTTTTTCTCTTTGCTAATAATATTGTGTCTCCAGCCTCCTAG
AGAGTGTCTTGGGGAATCATAGCCTGATATTTtcagtattttgaaaaata
tttgcaCGAACGCGAGAAGTCTTTCAAGGGGTAGGaaagtttttaaattc
tcatGTTTAATAACCTCAGTTTTAAATCAATGAATACAGAATCAGAAGAT
TTTTTCTTGTGCACAAAATGATTTGGTTTTGATTGATTTCTCATTTGGTT
AGAAATAATTCACACACTCACTCACTTTCGATTGTTAGTAAAATCTCATG
AAAAGTTGATGAATAAAGCAAGTATTGAATCCCAATAGACGCTTCGTGCT
GCGAAATAATATTAATGAATTTTTAAGGTCCtcaatcaagattttgaata
tctttaatATTATGGTGAACATAGCAttatctttttctgaaaatctttgA
ATGACTTTTTACTTGAGTTActtatacatttttttcatttacttttcttc
ttttattatctctcatatatatttttttggtcAATCATCTTTTCCTGAAA
TATTAAAACCTATTTTTCGatcaactttttataaaaaaatccggtctcat
ttttgtttttatctgcaaaacgtgttttttttctttttctttattatttg
tAGTTTATCATATTTTCCTTGCAATAAAGCTTGTTCCTTTGATCTCATCG
AAAGTCATTTTAAATCAACTTATAAACTTTTTacctaaaaagttgaaaat
aaagcTCTCAAAAAGTCGTAATTAGGAAGCTTATTTTCTCGATGCTTTGC
AATCAAGCGTTTTCAATCCGAAAAAAAACGTCTTTAAAATGGAAGAAAAC
ATGTGTTGGAAAATATACACTAGTGAACACGAAGAAaggaataaatcttt
ttttttcattttaatttctttttacttcaaaaaacctttcccctttttta
ttttggtgacACGACCGCATACTCTTTAGATACGATATATAACGAGAAAA
AAACTCTTAGTTTCGAGACTGTTcagatttttgttttaaatacaGTATAG
TCCATCATAACATATGATAAAACAAATTTGCAACAATGTACAAAAAATTA
AGGggataaaacattttaaaactctTTTCTCTAAACGTTGCTCTCTCGTA
ATTCTTTTTAGTTTACAGCTGCCATCTTTCTCTGAAGCATTATCAAAAAT
GTGGCATAACTTTCGTCCCCCTTCTCTTTGTTAATCTATACTAATTACCT
TAGCAGGGTTTTAAACTCTATAGACGTGCCTGTTTTTCCCTTCAAAAAGT
ACCTTTAAATTCACACATTGATATGTTAAAGAATTTTCACATCCCTTTTC
TTCCCTCTTTTGTTTCTCATCTCCAGTCCACCCCAGTCTTCTTTTGGATT
AAAGTTGTGCATAGCAGCAATTTTCCTTTTAATACTGGAACACTTTTTTT
AAGTAAAGATAAAATCTCTCTGttttagttttcaaaaagattgaaagata
GACAGttatcttttttcaaataaaaactgttGAAACCGAAATATATTTTC
GCAATGATatctattccaaaaaaatatgCAATCTGTACTTTTTTTAACAT
TGCTCTTGAGGGATAAAAGAAACAATTATAGGTACATAATGCCTCTTCGG
TATtaagttcaaattttcaaaaagtacaccttcttttttataaaaacatc
ctaaattttcgaagccttaggatgtttttagttttttgagttttaagcct
aaaaatgttcttgacataatcttattttcaccaatttttgagtatttttg
tccattttcctaagaaattagtcgttttagagtctgcgaagccttaaaat
gttcttaacttgttcttaacattttggccatcgaagccttatgttcttat
ttagttTATTCTTATCCAGTAGATAAAATCTTTTTCACATTCAGTGTTaa
acaaaacttcaaaatgcctATCTTtcttgtttacatttgaaaactcGACC
TTGCTATAAGGTCAATCAACGTCATTAATCATTTACAgttgaagaaaaaa
tcttttgttctGTTTATTTACTTATATTGTTAAGTTTTGTATGCACACAA
GTGGAAGTTATATACATAAGCTTTTTGTTTACACATTTGTTCAAGATCAT
ACATAACCATACTTTCAATTATAACCACCTTTTGTAAACCTCTTTCCGTC
TTTTACACTCTCGGTGCTGGCACACAATCATATAAGATCAAACTTATGGT
TTCAGTCCTGTCTATCAAGAATTCAGAATGGAGAAAGAATTCTATCTAAT
CGGAATTCAGCATCGCAAGTTCTTCATTTTTGCTGACCAAACAATGTAGC
CTGCTGTCGGACCTTCTGTTTTCACATCATAGAAAAATTGTTATAGAAAA
TAAGGTTACATCTGATGATTGCTTAGAGCATGAAACTCCGAGTTATggat
ttataaatttttggttttgaaatatatttttgattagaAAATAAGCTCAT
AATCTCTCGGTTCTCTTTTTTTAGGCTGCAAAATCAAAGCTCTTCGCGCC
AAAACCAACACATACATCAAAACACCAGTTCGTGGAGAAGAACCTGTCTT
TGTCGTCACAGGTCGTAAGGAGGATGTCGGTATGGCTAAACGAGAGATCC
TGCAAGCAGCTGAACACTTCAGTCAAATCCGTGCTTCAAGACGAAACAGT
TCTTCATTATCACCACTTGGTTCCCCTGCACCAACAGCTCCTGGCCACAT
CACGAAACAAGTTCGAGTTCCTTACAGAGTTGTTGGTCTCGTTGTTGGAC
CTAAAGGCTCTACCATCAAACGCATCCAACAAGCTACCAACACTTATATT
GTGACACCTTCACGTGATAAGGAGCCCATCTTTGAAGTCACAGGTCTTCC
TGATAATGTTGATCGAGCCAAACGTGAAGTTGAACAACACATTGCTCTCC
GAACAGGTGGCATCTTTGATCCAACTCATCCAGAGCTGACTGATCAACTC
TTGAACGGATTTGGCAACTCCAGCTTGTTCTCACCAACCGGCTCCTCCAG
CGGTGGTAGCTTCTCATCCCTCCTGGATAATCACTCGACCAATCCACTCT
GTCAACGCTCACATTCGGTGGATTCGTTCAGTTACCTTAGTGGACAATCT
AATGCTTCATCTAAATTCTCAGATCTCAGCTCAGCTGGAACCAGCCCATt
caacaataacaacaacaacgCTTTCTTCTGTGACACTGTCATCCCATCAC
CAACAGCTGACATTGAAAATGGTATGGGACAATTCGACCCAGCTCCTGGT
TCACCTGCACCAAGCTTATGGCCAGAAATGATGATTCCACGCTCAGCAGC
CATTGGACGACTGGGTGGCCCTCAAATGCAACCGATGCCACCAACCAGAT
CTCTCAGTGTCAGTACATTTACACCTGAGAATAGTGAGGTTCCTCAACTC
CGACGTTTGTTAAGCGAATCAGCTGCTGACCCATCTGCTGACTTACAGTC
CACCTACTCTCACTTTAACGGAACCACAGTCACCAGTACTGTTCAATCAC
CAATGATTCCTGAAGCTTCAATCATTGATATGACCAAGGTCAACACCAGT
GACGGAGAATCACAATCTTCAAGCCCCGATTGGATGGCCAACAAGCAGAA
TGGTTTACCAACCCAACAACCAGTACCTGGCAAGAATCAATGCTTCATTT
GTAATACTGGTAAAGTTGTGGCAGCTCTGGTACCTTGTGGTCATAACTTG
TTCTGTCTACCATGTGCTGAGCAGATGAAAGAGAACGAAGGAGATTGTCC
AGTTTgccaaaagaaagttgaagcCTTCCTAAGAATCATCTCTTAAATGG
AATGTGAGAAGGAACCCCCTCGAAAAACGAAAAAGCCttgtaagaaagaa
aattttgacttttattttttttggtctCGTTTTTGGAGACAACTTTTCTT
ACTTCGACTTTTAGAACATTATAAAGGGTAGTGATTTGCCTCCTCTCAAC
AACGTGAAAAGGCTTTCTTTTTTATCCACAAAAAGGTTGGTGATATGATA
TGTCTTCCCTTTTTGTTAAAGTTTTGTCTCGAGATAATAATCACTAACCT
TTATCCAACCCTCTCTTATCCTGCTGTATAGAAAAACTTCTTTTCGGGAT
TTTCGAATGCGTTGGTCTTCTTTTTTTACTGTACATATATAATCAGAAGT
TTCTGAAGAGAGGGGGGAAACGATACTTTCATGAGCGCACGCGCGACAAT
ATGACACGATCCTAAAACGAGAGGGTGTATCAAAGAAAGTATCCAttcag
aatttaaaaatattaaaaaagaatttaataataaaaaagGGTTATTATag
aaaaagattattttttaaacagataaaatttttttccagaacTAATAATT
TGTATTGTATTTTGTCAAACAGTCAGTATTTTTGTTGCCCTGTTCATTAT
TATTTTAGTCCAAAGTGTTTTTTGTTAATCCATCTCTCTTTTCCTTTTCC
TTGATCTACTACTTCAGTGCTTTCTGCAGCATTTAGGTTCTACCTGAACT
ATTTTAAAACGTTTAGTGTTGTACAGGCTAGTTTCAATTTCTTAGACTTT
AGAGTCTAGATCTTTGTCTAATTCTGAACTGTGGAAAGCAGACTTTTGGG
TAATTTAAAAATGGTTACACTTTAGAAAAGGACTAAGAGAGGTCGATTGA
CAATATCCACTCTAAAGATAAAATTTAGCTAAATAATTTCATCGCTTTAT
TAATAATATATAGTTTAAGAGAGAATTTTACTTGAGGTTTTTTGTCACTA
AAAATTATTACGCTAGGAGAGAATAATAATGGTATTATTATAATTGAAAC
ATTGTGAAaggtttatttttttatataaatattaCTACTAAAGAAAGATA
TTATTGTTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTCCCTTTTTGTTAAAGTTTTGTCTCGAGATAATAATCAC
TAACCTTTATCCAACCCTCTCTTATCCTGCTGTATAGAAAAACTTCTTTT
CGGGATTTTCGAATGCGTTGGTCTTCTTTTTTTACTGTACATATATAATC
AGAAGTTTCTGAAGAGAGGGGGGAAACGATACTTTCATGAGCGCACGCGC
GACAATATGACACGTTCCTAAAACGAGAGGGTGTATCAAAGAAAGTATCC
AttcagaatttaaaaatattaaaaaaagaatttaataataaaaaagGGTT
ATTATagaaaaagattattttttaaacagataaaatttttttccagaacT
AATAATTTGTATTGTATTTTGTCAAACAGTCAGTATTTTTGTTGCCCTGT
TCATTATTATTTTAGTCCAAAGTGTTTTTTGTTAATCCATCTCTCTTTTC
CTTTTCCTTGATCTACTACTTCAGTGCTTTCTGCAGCATTTAGGTTCTAC
CTGAACTATTTTAAAACGTTTAGTGTTGTACAGGCTAGTTTCAATTTCTT
AGACTTTAGAGTCTAGATCTTTGTCTAATTCTGAACTGTGGAAAGCAGAC
TTTTGGGTAATTTTAAAATGGTTACACTTTAGAAAAGGACTAAGAGAGGT
CGATTGACAATATCCACTCTAAAGATAAAATTTAGCTAAATAATTTCATC
GCTTTATTAATAATATATAGTTTAAGAGAGAATTTTACTTGAGgtttttt
ttcactaaaaattaTTACGCTAGGAGAGAATAATAATGGTATTATTATAA
TTGAGACATTGTGAAaggtttatttttttatataaatattaCTACTAAAG
AAAGATATTATTGTTTTTGTCCTATCAGAGAAGCTATGACACACTTTACC
TAacacaaaaacatcaaaaacaatacaaaaaaaacaatttttgataattt
tttatcaaggaattattttttttcgtttttgttgttTATAAAACGAACAC
TTTACTTAATATAGTTATTATTATGATCATagagaaagaaaattattaaa
tacATTTTGACCTATATCGAGAGACTGAGTGATGGTGCATTTTTGAGTGt
gcgagagaaaaaaaatactttcgaatatgataattttttataaaatataa
atagttgaaaaaggttggaaaatattattattatttagaaAACACGCCTG
AAAAATGTTCGTTTTTCAGTAATTCATTTTGCATTTTAGAGTTTTTGTAG
TATATATGCTTATAATTATAATTAGTGATATgggtttatttttttcttct
gttcAATTTTAACGGTTTATTTTTGTCTTTCTCACTCAACaaattatttt
gcaattttaacctttccttttttttgtatattttttcataGCGGCAAAAA
TTATCTTCTCAAAGTTAAAGAGTCATTAATCTTAAATTGGTCTAGGTAAT
AGGTATGCTTTCCAAATCAATTAAGAGAAACATCAAGAGTGCTTTCCTGT
ATATTGCAATTTTCCTGTCCCGAAGTAGTTATCTTAAATTGCCGAAAATC
AATCTTTCTCATTATTTGTTATGGTGAAATTATAATCAAAGACTTTGGGC
TTGCTTAGCCAATTTTCTTGATGATGTGTTTATTCATTTCAATTGTCACA
AACTTCCTGAATTTGTCTCGATTAGTTAAGTCCCagctttcttttttcaa
attcataatggcggccTAATTATTTTGTTGGTTACAAGGAAACAAAGTTG
cggaaaacattttcaaattggtCAGCTTTTTAACGACTTCCTCTGATGGt
cattttcatcttttcttttaattacgttgagaaaaacattcaaaagaaGA
GCGGAACCTTTCTTCATAAATTACCATGTGTTTGTGTTTACTTTAGatgt
ttcgaatttttgaaTGTCTTTCCCATTGCATTCAGTGAGGTATTTTGTGA
CATGATAATTAATGTTTTATTCACTACTCATCTGAAAATTAGCTTAGTTT
TAGTAAcccattttaagaaaatttgcactccttaaaaaatgcacttttta
cAGACAGCACCTACTTCGATTTATGAAACGACCAGATTATTTTGATGTGT
TTGTTTGTGACAATTGTAAAAGAAAAAGTATATTTTGCTGTGAAAAATGC
TATAACATAAAAtgtttgataaaataattattagTAGTAGATAACGataa
tgatattttttgctTTATATATATAATTAATACTACTTTTTCTGTTAGAG
ATTTATACCTtatatacaataataaaaaatctACTTTGCAATGACCTTAC
TACTTATGAGAGATGAGAAAACGAAATTATTGTATGTAACGAAAACAACA
ATTTTATGATATATAATAATGACGATTTCGcctattttttaatatttaaa
atgtatatgtattatcagacaatattctccaaaaaattattattactaTA
CAGTCGaatagaaaaatttttatctttcaaGTGAAAGAATTCcattgttg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003754TCONS_00003754Clytia hemisphaericatranscript
TCONS_00003755TCONS_00003755Clytia hemisphaericatranscript
TCONS_00003756TCONS_00003756Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00003755-proteinTCONS_00003755-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:699143..709442 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.8	6.51	3.22	2.11	123.91	90.83	148.61	155.46	56.95	101.31	37.12	42.14	59.61	48.35	47.79	51.21	36.78	43.93	35.12	41.71	36.96	36.83	23.44	27.42	21.49	24.78	133.34	109.19	13.49	13.15