XLOC_002346 (gene) - C. hemisphaerica

Overview
NameXLOC_002346
Unique NameXLOC_002346
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000041:20969..31239+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002346 ID=XLOC_002346|Name=XLOC_002346|organism=Clytia hemisphaerica|type=gene|length=10271bp|location=Sequence derived from alignment at sc0000041:20969..31239+ (Clytia hemisphaerica)
TTAGtatggaaaaataaagaaaaagaagatcTTGAAAACTGTGATCAATA
ATACTTTTCATTTGAAGAAGAAGGAATGAATTGACATAGCAACCATAGAT
ACATTGAAAGTTTGATATGATCAACAGGATAAAATGGCTATCACTTGAGA
ACACTTTACAGTAAAGAAAGTTAGGGATCGTATTTCTTTCCACacacaaa
aagaaaatgaataaatACGAAGTCATTGGTATTGTAGGGGAAGGTAAGAA
TAAACCAAACTTTCTTTTAAGATGCAAGTATCTACTCTCACACATAAATT
TACCTGTTTCATTTATCTTCTGCTTAATTTGGTGTATCCTTGATGCTTGT
TGTTTGTATTTATACAtaaatctttctttttgttattccaGGTGCCTATG
GCGTAGTTATGAAATGTCGGCATAAGGTATGAAATTTGAGCATAGAGAGG
CCATTTCTCTTGCATCCTCAATTTCTTTTACCAATTTCTACGTCAGTATA
AATTTACATTTCCGAAAAGATCAACCTTTCGTTTTCCCATTTTGCTGGAA
AATTTTGTTACCAAACGAGGCTAGAAGTTCAAAACTGTCTAGATACCTTA
AAATAATGGGATTTAAGCATAAGTTTTGTCACCTGATTAGGTATCCtcga
ttttttcatttttcaaaagattttaggGCATGGGGATGGGTTTATGTACA
TCTACATACAATAAGGTTTTCAAATAGTTGGAAAAATAATAAAGGTGAGC
TAAGTgctgtacacattttttaatatcTTTTACAGGAGACCAACGACATT
GTGGCgataaagaaattcaaagatgGTGAAGGTTAGTTGTTCTCTCCTTT
ATAAAAGTCTCTCCTTATAATAAAATATCAGAAAAGATGTGTTGGTGTCC
ATATTAGGTTAGAAAGACTCAAACACAGGATAGTAGACCATTCTAATTCA
TTTTAGCCCATAGTATGAATGAGAGCATGGAttatcattgaaaaaaaaaa
tcttttcgaaTTTTCAGACAATGAAGATATGAAAAGAACAACATTACGTG
AACTTAAAGTTCTTCGAATGTTGAAGCAAGAAAATATTGTACAATTGAGG
TAAATTTTATTTCGACTGAAGATTGTTTGAATAAGACAAGAAACCGTTCA
GTAGTATTAAAATGATAAATTCACTACGTCAACTATCATTACATTGTACA
GTTAGAAATAATGTAATGTGTAATGTGCTCACTTGATTTTTAAAGACCTT
GGTAACTGTAGGTGGTTAGTATTGGTAATATACTGACTTTCCTTGATTGC
CTTCATTTTAGGGAAGCGTTTCGAAAACGTGGAAAACTCTACTTGGTATT
TGAGTATGTTGAAAAGGTAAAGAAAGTGTTGCGATCCTTTCCTCCAATCA
AAACTTGCAGAAAACTCGAGTAAAACTGGTATAAAACTgaaaatgtttca
ataaatgATTGCCGTAAATTCTACAAAAAACAGAGTGGATTTTCTTCTGT
AAAAACTTGGcactaaaaatattaaaacaaaacatttatttACATCAGTC
TGATTTCACATCAAATGTTATttttaataacaataataaaaatataataa
aaatataatagAATTAATACCAACAGCAAATAGAATCCTAGAGTCAATAG
TTACATCTTGATTCcttgataatttttctttcttctttaaaggctatcaa
acaataaaaaaagaccAGATTCCAAATCTCCGtaaaacttttctcttttt
ttattcttacaGAATATGTTGGAGTTATTGGAACGAACGCCCAATGGTGT
ACCCATACCTCAATTAAAGTAAACACAGTATTTGAGTCGTACTCTTTTTC
TATTCCGCATTATTTAACATTCATGGCATACCTCAATGGAAGGTTTATAT
CCCTTCCAGGTCCTCTCATACTTTTATAGTCAACAAATCAGAACTGTTCA
GCCAGGGGGGGgaggtcggtagtaaaatctcagacctaatgacgtttact
acggtggtggtatctatgtgttaaatgttgaaaagattttactacccggg
tagttaaaactggtaaaataagcaaattttagctatttttgtaattctat
TAACTTTTCGggtgacttttctgaaaaaatctgaaaatttttatatattt
ttatatttttgaaaaaattctctgttgGAAGGTTGTTCTACAAACAataa
attctcgaaattttttgtcaatataaaaaaagactttaattctaagggca
aaacattaatttttgcactaagtgaaaaatgtgtcacagaaataatcatt
ttttagctttttttgtaaaatcagtccgaatagcaaccaaaaaaaaaagg
tggtctccatgacaaattgtcccaaaaacttttactagctaccagggtag
taaaatacctcttccaagagtctgggTGGTGGTATGTAAAAAATCCTTTT
ACTACTCATATATGTCTGAGATTTTACTACCCCCCCCCCCCCCCCTTGGT
TGAGCGAATGTTCATCGTTAGtcacaagaaaagaaaatttctattgtttc
acCATCACTTTTTCCGATTTGCTTTTTCAGGAGTTACATAAAGCAATTGA
ACAAAGCTGTTCAATGGTGTCATCAGAATGACGTCATACACAGAGGTATA
ATTCCACTCGTATCAATGATTATGTGCATTGTGTCCTTCAGCCCTCCATT
TCCCTCTTCATTCACAGTGTTAGTTAACAATAGATGATTcctcaaattat
tttcatttcatttccagACATCAAACCGGAAAATCTTCTGATCAGCAACA
CTGGATTATTGAAGCTTTGTGATTTTGGTGAGTTTGGAACATTGAAGGTT
TTTCTTTGCATAATTATTTGTTATTATACTCAACAAGAAAAATCTATGGC
CAACAGTAAGAATTTactattttctcatttttacacTCATAATAAGCTTT
TCAAGAGATATAATTTCTCTTTGACCAACTTTAGGTTTTGCTCGAAGTAT
CACAGATTCAGGGACAGGTCAATACACAGATTACGTGGCCACCAGATGGT
ATCGTTCGCCCGAACTCCTTTTGGGGTGAGTTTGTTTTGTACTTGAAATC
TGTGCTTGTTTGTTACCCCTTCCTTTTTATCTCGAGGTTATAGAGAAAAA
AATCCTGCCCTGATTGGCTACTTCAAATTCCATGTCAGTCCCCATTATAA
AACTGAGGTAGGAGGGACATTCTTAACTTTGAGCGCTTTGAGATGGTAAA
TTTATAAAAACACCTTGACGTATCAgttttgttttggaaaaaaaagaatt
tgaaatttttaaacttttttcggaCAATTCATCGAATAATTCTCCATAAA
ACCTTCATTATAGTGGTGGTTATGGTAAAGCAGTCGACATTTGGTCTATC
GGTTGTATTCTTGGTGAGTTGAGTGATGGACAACCTGTCTTTCCTGGAGA
AAGCGAGATTGACCAACTGTATGTTATTCAGAAGTTGATTGGACCATTAC
CACCAGCACAAATGCATCTGTTCAACATCAACCATCGTTTTCGTGGATTG
AAATTCCCTGCCATCACGAACCCTCTCACGCTCAAGAAACGATATTCCGG
AATCCTCAGTACAGACCTTTTGGATTACATGGAGAAAGTGCTGCAATTGG
AACCTCAGAAACGTTTGAATATTTCACAATGTGTCGACCATTATGCCTTC
ACTGACGGAGGAGGCGGTGGAGGAGGGCAGAAGAAGAAAGCGCCATCAGA
ACCAACAGACGTTGACAGTGGAAGCAACATCGAAGATGAATCCATCCACG
AAGAAGAATGGCTTGAAACTAAACCcacaaaacataaaacaaaatcTCTT
CTCAAAGACACTTCACATAAAATTTCCTCACCAAAAGTCACTGCCAAACC
GAAAGCTATGAAACATTCAAACAAAgcacaacaacaacagcaatcTTCTT
CTCTTATCCAACAATATTCTTTCGCTTTCCACAGCACCAAGAATGAAGAT
GGAGATAAAATCGACAAATACAGCAATTCAACGTCTTCACCGCGCTCGTC
CCATTCCTCTGTCGAAGATGACGATTACGACAGCCGAAGTCCCGTTCATT
CCCAGCCCTCTAAACCGATCAATAGTTACAATAGCAACAAAGTAGAGACA
CCTAGCAAAGAGAAGCGAAGTCAGAAACAACCTCATCAAAAACCGAAACA
GTCAATCACTTCCAATTTTGCTTCACCAGCTTCAAGCTCACATCAAACAT
ACTACCAGGCTAAACCAGACCTTCTCAACAATCTACCCACCGTCTCAAAT
CCGAAAGCAAAATCCTCCGATAAAATCAAGAAATCTAAGAAGGTGGGTTT
TCTAACGGAACCGATTGTGGCGAGCAGAAAGAATCTCAATAATTTTAAAT
TGGACGAGGAACTTAATTTTGGCGAGacagcaattttttttctgagcaTT
ATGAAAAAGTCATTCTTTGAGTTTTTATCGCTTTCATTTTTAGACCAGTA
AAAGAAATGAATTAACGCAATTAAAATCGATGAGACAAAATGGTAAGCTT
tttgtttcattaaaatagtTATGTTCATAATATCTCTTATAGGACGTAAA
AGTCGATATAGATTTTCGTTAAACATTATTATAGTTGAACATATATAAAA
CACAGTCGTGTTCGACGTTTCGAGGTTTGTCTTTGTCAAGCTTCCATAAC
ATGATAAATATACTTTTCGTGTGAAATCAATTGCCTACTCTACTTACCAG
TTTCATCAAGTTGAATCACCTTTTACTGTTTCCTCAATAGATGTAATCTC
GACCACCAGCCAACATGAAatatcgatgacgtcatcacgaTACCGCACAG
ATGATGGTATTCCTGAAGTTATCCACAAACCAACACTCTCCCCTAAAGTT
GGGTTAGTTGCTTGTTTCCACTTAGGTTACGTCGTATCTTTCTCCGTTTC
AAGGGTAAACTTCCTACTCTTCGTaaagtaaggcctaaaagccttgagct
gtctattgtgtagactagttCCCATTCTGTGTGGATTTTCTTCTAAACCA
ATGCTGAGAATCGATAATATAATTTTGAGTCTCCAAATCATAAAAGTAAT
GAATGAGAACACTATAATGATATTTGTGAGAAACCCTCTCTAAATGGCTC
CATCATTATTACTCatggtttttcaaaatctaagaCCCTCTAAAAAGAGA
GGGTAAAAGCTACAACACCTTGCAACAAAGACTGTTTTTGGACATAGTTG
TAAACCATTGTATGggaaatattcacaaaatttacaaatataGGAGGCTC
TTACCCAATCCtcgaaattaaaagtttttcgtATTTCTCATTTCCAGACG
TGAGAAGATGACGGAGAATCAAATTCTGACGCGTTATGacgccgtcaaca
agaaacgACGTAAAAACAAGGTAAGTTTTCTTATTTCAAGGATATAAGAC
TCTggttttaaaatattcaattcTTCAGAAAGTTTATCAATAGCCAATCG
ATGAAGAGGAGAAGAGGCtttaaattttgttattttgtggTAGATACGTG
TGCTCATTTTACCTGAAAAGGCCGCATAACTTAAACTTTCTTTTACCTTG
AACTTATAGAAAGACCCTTCGCTTCCGAAATCAAGACAACGAACTCAAGA
TTTATACGAGGCCAGGTAAATCATTGATCAATTATCCTCTTAACTTGATC
ACTTTTCCTTGGTACTAATGTATTAATGTAAGTTTCGTGGAAAATGGTTG
ATCAAttttaaaaacccttttttaatagattttttaaattttcttgtttg
tttttcaGTGATGGAGGTCAAGATAAGTATGGCGATCAGGTGAGctaacc
aaacaatttttatataaataatACCTAGTAAAAATTATCCGGGGAAGGGA
AATAACTTTCGCCACGGAAAAATTAAGTCACTTTCACCCGAATTGTTTAT
TCCTCGATAATGTAATTGAAGACCCTtgggaatacaccttttcgaccgta
gccgccaattaccgcacgggcatttttttgACCGCTTTATCCCattaaac
tcgatccaatccttttttgacacatatttctattgtctataggtgcgaaa
aaaggactgggatggttttagtgggataaagcggaaaaaaatgcccgtgc
gtcaattggcggctacggtcgaaaaggtgtataggcTACTTTTCACCAAC
AGTCCATTTACGTTGCTCTTCAGATTCTCTACACTACAGTCAACATTACT
CCTTTCTTTTCCGACAGCATTCGGAAGGTCGGCGTACAAAGATGAGCAAT
TTTTCGTATTACGGGGGAGGTATCACGCCTTCTGAATCGAGAACGGCTGA
AAAGGTAAAAGGTTATTCTAATTAGGGAGAGAATGCAAtctctaattggt
cagccccgatgacccttcaaatcccttttTTCCAGCCGACGCTTAAgagt
ttggtttttttattccgatttctaaagtttttatccgATCGGGTTTAGTT
TGGTCTCCCGATCTGTGTATTTACTCTCAAGCTTTTTTAGGGCAGTGTTC
CGGTTGGGATACGCTTTCAATTCATCCAATCGGGCTAAGTTTGGTTTCCC
GATATGTgttaaaaacaattcaatatggctgccaaaGCGGTGCTTTTTCG
TTCGTTCGGGTACGTTCGTTGTTTATCTCTTGCCAGCTTTTATTTTATAT
ACAATCATTATATTTTGTTGAAGtggcttttaaacttataactaAGGAAG
ATACAACACTGGAGTTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtggattaaatattttttaatagataaatattgcacGTTTAAGC
ATATATATTTAGGCTCAGGTTAGGGAAAATACAGTACAATAATTACAGTC
TTTCTGGGACGACAGcggtagcctggatatccagcccgtaaactttttct
gattttgatatttcttatgtttacggtctggtttacctagatcgtctgca
ttctcatctgaggatgattatgcggatattctgattNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCGACTTGAAGTGTTCgcctaaatatttag
gtggaccgcgcgggcgatcagcaaggcgcatacgctgctttgcaaatctc
cctgacttttcttcttcgaagTAAACAACAATAGAAtatctaattatctc
ccttgggtgtttgaccacgcatccaaataaaaataacaataatggtaggg
aagaagtgtgaagatcaaaacatgggNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt
taatcttcttaatgacttggttgcatcgtgtaaagaactaaaggtatatc
tttcttttgcttcaattcttcttttctgtttgccaattttgtattgctgt
ttttggttggatattttgaaacattttttctccaaaatttactttgcact
ttctgtctaacagactttccaccacactgtctatattttatggtgaaggc
tgccattctaaattgatttatNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTTACTCTCGTCTTAgtaaatcatatcaatttt
taacaacatatctttctaatcatattaagcaatttaggctgaccttccag
cgcagctggtttattaaaAATGGAattgaagtttaaaaaaattcttcgtA
CGATTGAAAAAATCGGTggtcaaaaatgtcatttgttCGTGTTGGTAATT
GACGTTTAATCAATATGCTTGTTGTTGCGAAAGGTTTGCACACCATCAAT
TTTTTAGTTAAGTTGCCATATTGATGTTCATTTTGGAGACTTgataatca
aaaaatttttaatgatgTTAGTTTTCTCGATCATTTAGGATCCATTAGTT
CAGCGGCTTTCTATTGGTGAACTCCGGTTGAACCCTCTGCAAAAGAAGTC
ATCCAAAGGTCAAGTAAATGTGGGCGGTCGAAATACTAACGCGCCAACTC
AATATCACATGAGTGGTGACTCAGGGCGTTTCGGTGCCCATCAAGATATC
AGTCCAAGGGCTTCGAAGAAAGGATCATACGATAGCATCCCGCCCGAGCA
AATATTTCATGCTCCTGAAAATTTACAGCCTGTGCGACGTTACGCGAAAT
CGCGAACAGAGTCTAGACTGGAGGACAATAATGGTTTGTTAGAGATGAAA
TTGAACGGGCTTTCACCGGAGCCTCTTCGACCAATCGCTTCCTTCAAATC
AAAAAGCGATTTTGATAACGAATATAGATACAAATCGTCCTTCAAAGATC
ACTTCCCTTGAAACTTCATCCATCAAAAACTTAAATTTAGTAGAATTGGA
AATTCAaagtttaaataaatttttcattagaaACGTTCATCGTCACTTTA
ACTAACTCGGAAGACCTCAAGCTggatttatattcatttcttGTTCCttt
tttcttaatctttatgaCATGTTTATCGGGACTTAATTATTCTGTACATT
TGAAACAATTTAAATACAAATATTCCTTAATTTTTTAATATATATATAAC
ATAATGATGATTTTTTGGTTATTGATTCAAAAAGTTCCACCCAATAAGAT
AGTAgagttcaaatatttttatttgtaaatacGGTTGTTTATAATGTTTT
ATGACAGAAAATGTTGTTGAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004198TCONS_00004198Clytia hemisphaericatranscript
TCONS_00004199TCONS_00004199Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004199-proteinTCONS_00004199-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:20969..31239 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.36	8.08	4.27	3.58	33.59	27.27	26.26	27.86	22.1	23.53	22.21	18.66	13.71	13.04	6.69	7.19	8.31	9.67	15.51	15.7	11.77	11.95	12.97	13.68	58.22	54.16	10.72	8.33	12.45	12.27