XLOC_002648 (gene) - C. hemisphaerica

Overview
NameXLOC_002648
Unique NameXLOC_002648
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000047:571155..581108-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002648 ID=XLOC_002648|Name=XLOC_002648|organism=Clytia hemisphaerica|type=gene|length=9954bp|location=Sequence derived from alignment at sc0000047:571155..581108- (Clytia hemisphaerica)
GTCGTCTCTAACCAAGAAAGACAGAAAGAAGCAGGTATGAGGTAGAGCAG
TCAATTTCTTTTTCTCTCGGTTGTCAGTTTCTCTACGTAAATTTGTTTCA
TCAATAATTTCGAGCTAGTTTCGTTAGGTTTAACAATTAAAATGAAATTT
TATTTCATTGCATAGGGCTGTTTTATTTTTGCATCAAAATAGGGTAGGCC
AGGCAGATAGGACAACTGTAGCTTAGGATAGAGGACCCTACAACTTAACC
GCACAACACGCCCTACCCTTAGGGGTAGGCTGAGTTTATCTATATGTTAA
TAGCAATAGTCTGTTCTCCTGTTTTGTATGTTTTTTTTCTGTTTTCTGTG
TGTAAAGACAACTATAACATAACATCCAAAGAAAGGTCAAAGGACTTTTA
GTGTGTTCAGCTACAGCTTAACTGGTGGTCATTACATATTATGTATTAAT
AAAATTGTTTAAAAATTATGGTCATGATGTGTGGCTAATCAAAAGTGCTT
TTTACCGTTAAATCTTTTCTTTATCTTTATTTAAAGAAATTTTAACAAAA
AATAGAAAAAGTATTTAATCTGTGCGTTAAAAAGATATGATCAATTCCAA
TGTCTCAAATTAAACAATGGACAAAGTTAGAGAAGCTGGGAGGGGGACTA
AGTAGGGGAAGGTTTATATGAGAGGTTTTTGAATAGACTTTTTAATACAG
TAATCTTGACGACACTATAAGGATATGAGCAAAAGAGGGTGTCAAAGGCA
GTTAGTCACACTAGCGTTCAAATAAAAGGGGGGGTTGGGCAATTTTCGAA
ATTTTAATAAACAGGAGGGACTTAATAGGAAAGGGGGGGCTGGAAATTGT
ACTTCTGAAAACCCAAAAATAAGGTAAATATAGGTTAATATCAGGCTTTT
TGGAGTAAAATAAGGGGGCTTCTTTTTGCCAACTGAAAATATTCCTAAAA
ATTAATAAACGGGGGAGGGTCCTAATAAGGTCCGGGGGTGGGAAAATTTT
TCGAAAAATTAACAAGCGGGGGGCCCGTTTATTTGGCACCTAAGAGTACA
TGTGCGGATTTATTTTTACTTTTTAGTATATAAATAAGGCCTTAAAACAA
AGCGCTGTCTCTGGAATTGAATGACAAAATTTGGTTGGTTGATATTCTGG
CTGCTGCACGTTCGCAATCGATCATTTTGTCTCATTTAAAGTTTTCAAGT
TTTAATCAATCGTCTTTGGAACTTGAACTTGATTCAGGTAACTCTCATCC
TTGTTGATGCAAATACATCATGTAGATGACTGATGTTGTTTTTCTGAGAG
CTTGATCTCCTAGTGTGACTAACTGAAAGGAGACATATGTGTGCAATGAC
GAAAACAGGATCATTTCGAAATGTAAAAAGAATTATTGGCAAAAATATAT
AATTGAACATGCATCCCATGGGTATGCATTAAGATTACAACTGAGTGTAT
CTGACCTTTTTGAATGACGGGCGTCCTGTCTACCCCTGTTTTGATGACGG
AATCAAAAGCCTAATACCGTTGAACAAGTGGTATTTATACAAGGAGGTTA
CCTGGCAAACCTCAACACCATTGGGAGCACAGTGACCTGAACCAAATCCA
GATCTAACTGGATCTTTGACCTTAGGGAAAGGATCTAAGTAACTGACTAC
TGGGCCCGTCTGTAAAATACATGATACCAGCAGGTGGCTAAAAATTGATC
CTGTGATCAAAAATACATGTCACATGGAGTTGCCTCACAAAATTTGAGAA
AACATACCTATATAAAAAAGAAGAAAATAAAAAAATATTGAGGAAGGAGG
GTCCTATTTTCGGCATTTTCAAAGAATGATGACGTTACCAAATATTTGAT
GCAAAATTTAAAGTAATTTTAATAAAAATTTCAAAAGTTACCAAAACTTT
AGTGCTTTTTTGCGGGTGGTGCATCTAGGTTCAAAGCACGAGTGGAGCTC
ACTTGATTCAAAAAAGGTTGCTCCTTAATTTTAATGTGATAAAAGTTTGA
AACAGTGATGAAAATCAATCAGTGATTTCAATTTCTTATAGATTTGACAT
TTTGACTCTCTCATACATAAACATATGTTGAATTACCATGATTAGACTTA
CTGAAATAAAAAGAATCGAAAAATTGTTGAGTTTTAATAAACGGGGGGGA
GGGGGGGTGGTTCTTGCTGCGGGTACAAGGGTTGGATACTCCAAAAACCA
AAAATAAGTTAAATCTAGTTAAAATTAGACAACATACACATGGAGCAAAA
TAAGGTACTTTTCTTTAGTTGGCTACTTTAAACGGGATTAAATTTAGTGG
ATGACTGATTATGAGATAATATTTTTACAATTTCGTGCCATTCTACTGCC
AAACTATTCATGTTGGTTGTGAAATAAGCATTATTAGCGCTTCTATCTAT
CATGGCGTTAAACATGCTAAAAGTGGTTTTTTGACATTTTTTGGAATTTA
ATTTGAAAAAATTTAGCGCATAAGACCTTTTCAAATTTTCACTGGGACTT
ATTTTATGTTGTCATCCACAAAATCCGCGAAATCCAATTAATCCCATCAA
ACTATTATGAAAATGACTAAATTGTGGATTCTAATAAGATGGGAGAAGTT
TGGACTGGAAAAAGACTGGGGGACTGCTTCTTAAGCGCTTGTGTAACTTT
TTGAAATTGCTAGCACACTGCCTCACCTTGGCTAGGTTTGAAAGAGCCTG
TTTATGTTTACTTTAGTGGGTAAGGTAAGTATCTCATTTAAAAAGCTAAT
TCAATTTAAAATAGAATAATTGAAATTAAATGGCTACTGCCTTAACCCAT
TAGTATGGAGAAAACGATCACTCTATTTATTATTACTTTTGTAGCTAATA
AGATGAAAAAGGCATTGGGAAGTGTGCGCAGGCATNTGTGTAACTTTTTG
AAATTGCTAGCACACTGTCTCACCTTGGCTAGGTTTGAAAGATCCTGTTT
ATGTTTACTTTAGTGGGTAAGGTAAGTATCTCATTTAAAAAACTAATTCA
ATTTAAAATAGAATAGTTGAAATTAAATGGCTACTGCCTTAACCCATTTG
TATGGGAAAAAAAATCATTCTATTTATTATTACTTTTGTAGCTAATAAGA
TGAAAAAGGCATTGGGAAGTGTGCGCAGGCATTTTCAAAAATTAGACACA
GATAAAAATCACAGGGTGTCAGATTTGGGTGAATACTCTAAACCAAAGGA
TCCTAAAGATTCAGACTCTGTTCGAATTGTTATCATTTCTGATACTCATG
GTACAAAGAAAATCCCTGAGATTGTACCTGATGGTGACATTCTAATACAT
TGCGGTGACTTCACATTACATGGACGCTTAGTAGAAGTTGAATCATTCAA
TGAAATATTGGGTAGTATTAAACATAAGTTCAAACATATTTTGGTCATTG
CTGGGAACCACGAACTTATGATGGATCCATCTTTGAATGGTTCTAGACCA
GAAGAATGTCAACGGATTTTAAGTAATTGTACTTATTTAGAAGATGAAGG
AATTGAATTGATGGGAATCAAGTTTTATGGAACACCATGGTAGGTAATTC
TAGTGATCATGCTTGTTTATTTTATTTAAAAGTATCAAATATTTGTCTCT
CATTCAACTATGAAATTGTAATCTTCTATCAGAAAATAGTAAAAAGAGCA
CATAACACTCGGCTAAAAACTTTCCCCTTCGTTGTTTTCTTTCTAAGGTT
CTTAAAACTAAAGCCGTTCTAGATCTCCTAACTTAAGGGTGGAATATTTT
CATGTAAGATACTGCATTAGCACATCAAAGTTTCTTCAAAAAGACTTGTT
TGATTCTGCAAAAAAATAGTAAATTCTTGGGAATTTCTGCACTGTAGCTT
AAAGGTTTTGTTTTTAAATAAGAGTGTTATGGTTTGCTTACTCATCAGTT
TTAATTTACAAGCCTTTTGATATTCAATTGGCACGGATGTGGAGCAATAT
TAGTCAGAAAGAAGAAAAGAAAAACATTTGTTTGCTTATGTCAGCACAAT
ATAATAATAAGAAGACACTGTCCTGATATGAAACATGTGTCTGATATGAA
AATTCCTGTGTAAAATATTTTAAGTATTTAATATCAATGTCTTATTCTCA
GGCATCCAGAGCACCGTGTAGGAGATGCTTTCTCAGTCAAGTGTGGTGAA
GAATGTCTTTCTAAATGGGAAAAAATACCTTTCGACACTGATGTCCTCAT
GACTCATACACCGCCTTATGGTCTTTGTGATGAAGGTCACCATATTAAGC
ACGCTGGATGTCCAGAATTGTTGTATATTGTCCAAGAGAAGATCAAACCG
AGAATCCATGCGTTTGGACACATTCATGAAGGTATGGTTTTTGTTTTTAC
ATTTTGTTTAATTCGACTTTTTTCAAAGCTTATCTCTTTTTCTTTGCCAC
TTTTATCATTCATTTATTCAGTATTTTAAACTGGAAAATCATAATTTATT
CATTGGTCTTCTTGAACCTCCTTTATTCTTACACCCCAATTGGGGGTAAA
TATAACTGACTGAAACTCAATGGGGATATATAAGCTCGTTTATGAATGTT
TGTGTAACAATCTTGTGAATTTGTTGACTGCTTCTTTAGAATTCTGATAG
AACGAGAATACATTTGATATTTTCATGGAAGAAATATGGGATGTAAAGTA
CAAAAATGTAAAGAAAAACATACACGACATTACTGCAAGCTTTGCAAGGA
TAAAGATTCTCATCATTTTTGTAATCAATGTCCAGAAAGCCTTACACTGT
ATCATGGCACAGCTGAAAACTATCTTGGACCTATTACGAATTGGGGTCTT
GAACCAAGTAAAGGTGGACGCTTAGGTCCTGGAATTTATTTTGTTAAAGA
TTTAGATGAAGCTAAAAGTATCTCCAAAAACAAAGTTTCTAAAGGCCTCG
GTGGTGGTAAAGATGTTGTATTGCATTGTCGAGTGAACTTGGGTAAAGCA
GTAGACTTAGGGAACAATTCTGGATGCACCTGGCAAGGAAATCAGAACAA
TTATGATTCCGCAACTTCAATTCACCCTCCATGGGAAAGCTTACAAGGTA
GATGGGTTATTTCATATGCTTTCCCTGAATATTGTTTGAAAGATGAAAAG
AGATGTGTTATATGGGGTATAAGCATCGGTGATGAGACTGTTGAAAAAGC
TGATGGATATCGTTGGAAAGAGACTTTAAACATTGTCAAAGATATGAACC
AAGCAGCAGATAAACCAACCATTGATTCTAAAGTTAGAGAAATCACCAAT
TTTCTCGCCAATGGTACAGGACATACAAATAAGTTTCTACCGAGAGGGAC
AAACCGAAAATTCAGGAAGGCAATATCAAGCTTCACGTGTCAGGCTCGAT
TTCCTGATATATGTAGCTTAGCTTGTAGATATTGGTACACTACATTGAAA
GTAATTCTGTACTTGTTTTATTTTTGTAACACAATTGCATCTATCGTTCA
CTTGTTTGCTGACAGTAATGATGAGACGAAGCCAGCTTTGATATCATTCA
CCGTTTTCTTCACTCTTGTAACCTTATTGAAACTGCTTTATGTATTATTT
CATATGTTTTGTAAAGACAAAATGGAAGAAAGTGCTTTTGTTATGTTGGC
TGCAAATGTTTTAATTGCATTTTTCTTTGAAATGCCAATGTTAGTTTCAC
AAGGTTACGCTTTGAAGGACATTCCAAATATCGAATGGAAAGACCATGTT
CAGGATATGATGATACATTTCGAGTTCATGGTGAACTTCTTTATCACATC
ATTAATTGATTTTGTACTTTACAACATTGCTCTAAAGAAAGAGAAATCTT
GTTAAATTATTTGTTTCTAGCTATCATGTACACACCCATCGTCATATTTA
TCGCATGTGGGTAAAGGCCACATTTTTGGTACACCTGTCCCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCACAATATTTTGAG
TAAATACTTTTTTCACTGTTGCTCAGGTTTTGCATTTTTCTAAAAAGCAT
GTTTTGCGACTCTGATCTTGTCCCTTCCGTTACGCGAATTCATTTTCAAG
GAAATCTTTGTCAAATAGCTATAGTTTATGTTAAATTCTCACAAGTTACC
ATTGGGATTACTCCAAATTCAATTTGCAAACCATTATCCTCCATTTTTGA
CATGTTTTTTCATTGACAGTCCTTCCCATTGGAAATGTGCCTTGGTTTTG
TCCCTTCCGTTACGCAAACATTAAATTGAACAGCATCTCAAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTAAACTTTATATTAAC
AATGTGGTGGGAGTTATCTCCTTGGAAAATTTGATGTCCCTTCCGTTATG
GATGTCCCTTCCGTTACGCCTTTTTTTAAAAGGGAGTGTTACAGGGACTT
GGATGTTCCTTATAGTGTTTTTTTCTTCAAAGCAAAGATATCTGAAGTTA
TTGCATTGTTGAAAGACCTATTGTAGACTGTTCTCACATTTGCTACACTA
CAATGACTTCTTTTTATCTCTTAACCCTTAGGCTCCATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAG
CTGGGGTCCCATCTCCCTAGGACTTTATTTAAAGGGAAAGAAACCAAATG
TTTTTGAAAGAGTATAAAATTACCTTTCCAATGGTACCAAAACAAGTGTC
TGAATCAAAAGCTACAAGCTTTTACGCCATTTTGAAATTTAAAAAAAAAT
CATTGAAATTTTTCAAAATTTTCAAAACTACTGCGCGCTCAAAGGGTTAA
CCAACAAATTTTTGATTTTTTTTTAAGACTCCAAACTGCTCAAAATACCT
GAAAATGACAATTAGGAGTTATTTGAAGTTGTTTTGACCATAAAAAATCT
TTACAAGGGGTCTCATTAACCCTTAGGCTCCATAGGACGTGTTTTCGCGT
CCTGAAACAGCCAAAATACCAAGTCCCAAAGCTTGGGTCTCAGCTCCCTA
GGACTTGATTTAAAGGGGAATAAACCCAATGCTTTTTGAAAGAGTATAGA
ATTACCTTTCCAATGGTTGGTACCACAACGAGTGTCTGAATCAAAAGCTA
CAAGCTTTTACGCCATTTTGAAGTTTCAAATTTCAAAAAAAAATCATTGA
AATTTTTCAATATTTTCAAAACTACTGCGCGCTCAAAGGGTTAACCANNG
GTCACCTACAGTGGGTCACCTAAATTTTAGGGATCATCTAAAACTTGGGA
TGAGGCTTGGATGGCCCAAAACAGAGCTATTTTCAAATTTTGAAAATTTT
GAATATTTCAGAAAATTTGTCCCTTTCGTTACGCTTATTCTATACAATTT
ACAATTTTTAGGAGTATTTGTAAGTTTATATAGTTAGTTCTGGTTAGTTC
TATCATTTTAGGTTAAATGACTATTAAAATTCAAACTATCTTTTGAAACA
AGTTTTTTCCTAGTGAAGATGTTAATTAAAAATTTGAAAGTTGTCCCTTC
CGTTACGCAAATTAGGCTACCCCTCCAACCCGAAAATGTTAATTCATGAA
AAACGATTAGGAATTAGTTTAAACACTTTGTAGAAACATTTTAAGAGTAA
GTTTAGTCTTATAAGTGTCTCTTTTTTATAGAAATAACAAGTTTTTAGTT
ATTGGTTGAAAATGAGAAAAAAATCAACCACAACAACTTCTAGGGTCCTA
CAGTTCTGCAAAAAGGTAATATAGAGGAGCACATACTTGATTATCATCAT
AGAGGTATATACACATCCAAATAAATAGGTTTTAAGCAATTTTGAGGATG
AAGTTTTTTTAGCGTAACGGAAGGGACAGGTGTACCAAAAATGTGGCCTT
TACCCATGTTCTATCTGTTATGCTCCCGTTTATGTGACACTAGCTGGATG
GGTTTATTTACCTGATGCTTTGATTGATCTCTATGGAGGACAAATTAAAG
GAGGTGTTACGTTTTTTTTGCAAATATCAATGTATGTTGGAGTTTTTGGG
CTTTGGACTTGGACAATTTTTTTGGGTATTTTAGCTCTTTTGATGATTAT
TGTATTACTTTGTTGCTGTTTGTGTACAAGCACCGCTATGCGAAATTAAT
AAAAATGATATTAGTATATTATGATATAGTATTTGGGTCATAGAACAATT
TACCGGACAAATTATATAATTCCAGTGATCTAAATTTTCCATTGAATTAT
CATATTCCCAACTTCAGTTGATCAGAATCTGACAATGTTTTAGTTTTAGC
TCCAAAACGAGACTCCAAAACTTTGGGGGTAGGCTTAAGACTTTAAAAAT
GATTGTGTTTCGGCTGAAATTTGGCCCACTAGTTCACTGGGTGAATATCT
GAGGGTGCTTTTTTCATTTTTTGGGACCTGGGGACAAGTTTTTCATCAAA
ACGAGGCTTTTGTTATTGGACTTATCACCTATCGATTATACAATTGGGCC
TACGAATGATTGAAAAATGCTGAAGTTGAGCCCAGTGCGGTCAGCACGAT
CGTCAGTTTGTATATTATATTATAAAAATATGCGAGTATAAATTAAATTA
CTTAATCGATACTTTGTATGATATTTTAATTAATTGGCAAAAAATAATCA
CCGGTTAAGAATTTCGTCCATTTTAAATAATTTTGTTAATTTTTATGAAT
AGTTTAGTTTTTAACCAATGTTACGTCGGCTTTTTAGAGCAATCATAAGG
CTGGAAAACGCCAATAAACTGAGCAATTATTGCAATTTTCTAGGTATAAT
TTTGTAAAATGAAACTGTAAAATATAGAAATGAAACTTTGAGTATGAAAT
TAACTTAAATTCTTTCATAGCATACGGCATTGCCAAGGATAAAACGACAA
CGTATCTCAACGCATCGATTTGTACACGCCGTTATCGGTCAGACAATTTA
CCGTTTGTCATCGATTTGAAGCCTATCGAGAAAAAAACTGTCGATTTCTT
ACCGAATGTTCTGGATGGGATTGAAACGATTTAAATCAGGTGATGTTGAT
TCTCTTATCTAAGATTGGAGATTTGTCAAAAAATAAATATCCCAATGGTG
ACCATGTTTCAGCATCCAATACGAAGTCGATTAACTCATTTATTGGATAT
TATTGGTGTGTGCAACCTCAATTACGCTCTTTTTTTGTAAGCATAACATT
TATAAGCATGCTTAGGCTCAAACTCGGTAAAAAAATAAGCATAATACTAA
GCAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004699TCONS_00004699Clytia hemisphaericatranscript
TCONS_00004698TCONS_00004698Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004699-proteinTCONS_00004699-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:571155..581108 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.89	2.74	1.7	2.02	22.28	15.41	17.55	14.09	12.22	13.19	16.13	11	10.61	10.43	6.6	6.42	5.32	6.76	6.8	7.66	4.74	5.33	3.44	4.98	12.26	15.37	6.22	2.9	6.29	6.05