XLOC_030756 (gene) - C. hemisphaerica

Overview
NameXLOC_030756
Unique NameXLOC_030756
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_142:892311..895868+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030756 ID=XLOC_030756|Name=XLOC_030756|organism=Clytia hemisphaerica|type=gene|length=3558bp|location=Sequence derived from alignment at scaffold_142:892311..895868+ (Clytia hemisphaerica)
CCCAAATTGAAAAACTCATAGAGAAGGAAAGGGCAAGATTACCAAAAATG
TATTATTGTTGGATACTGATTTCTTTGATAGGACTTGGTAAGCTTGATTA
TTCTCACGTTTTTACAACAAAGAAATATTTGATGTTCACTTCCAGGAAAA
AGGCATCATATCATGATTTCACGGGTTATTTTTCAAGGGAATTTCGAATA
TTCTGCAATAAATTGAATTGTAGAGAGTGAAGTTACTGTTCACAATATGA
GAATGATATCTTCATAATAAATAAGTGGTTTCGTGAAACTTTTCCATTTC
TTTCACCTTCAGCGCAATGTGACCGTTGTCAGTACAGTTTGGACTTCCAA
CAATACGAAGGGTCCACTCACAATGATTACGAACATATTACATCTGACGA
GTGTATGCAAAAATGCGAAGAGGACGCCGATTGCATTGTGGGAAATTGGT
TCCCAAAAGATGATCCCTGGGAAGAGAGAGATCATTCACTTTGTCGTTTA
TTCAAAAAGAGTGATCACACTTTGAAGTTTTCTGATGATGGTGATGAAAA
TACGGAAGCCAAACTGATCCGGTGTTCTAAGAAAGGTTTGTAAGATGTGT
CCTTTATACTCCGTTTCCAACCGCTATCAGTGTCAAGCCGGTTTTCCCAA
GAATTTCTGACGGTCCTTTATGACGACCAACATTGATGTAAATAAAATCT
TGGATAGGACAGGGCgagagaaaaagtattttatcGATGAACCAAAGAAT
ACTTCAAGTCCCCGTCCATTTTGATCGCAGAATCTATATACATGACATTT
ATATATGTAAGAATCTTTATTGTAAAGACCTTATAAAGCTACCagtttga
ttaaattttttttttattagatgaCATTGATGATATTGAGCGATGTTTTC
TGGATGAACGATTCACACGACATTGCGGAGCAGCTTTACGATACAGTTAC
GGCAAGTCGTATGAAAATTGTCGCCAGGAGTGTAACGACCGTGCCGATTG
CCAAATTGCACACTGGCACCCGCCCTATCAAATCTGGGATGACGAGGCTC
GATCTGTTTGCTTcttattttctgaaaatgctgaACGGTGCGATTGGGGT
GGAGCAGAATTGATTTCATACCACCCTGGTGCTCAAATGATCCGatgcaa
agaaaaaagtaagaaaatttttttatgaatttctaTATGTACATTATCTT
TTCCGATTTTTCTGGAAACACAGTACTTCTTTTTAGCTAAGAAAAGTCCA
TAAACTGCAATCGGCGTCGAAATATATTAGCACTTTtaggtattttaacg
tttttcagaatttaaagatcggGTGAGAGTTGCAacttcagtacttccac
tttgtttcattggatttttcgatttggaaGGCGTTAAAGTggtttccagg
ctatattctcagccttattagaacatttttgagtatatttttgagtctta
agtctcatgttaaaactcagagttaaaactttcCAACCGTACTTTAAAGT
AGTTAAAAATTACTTGCAGTTTTCaaatttgagggaattcccattttgtg
ccaaatattacgGTGGGGATTGTGGTcgattttgacgattttgacGCTAT
ACAATTATTGGACACAATATATCCAAAACAACTGAAAATGGTCTATATCT
CTTCTTATGGTTTGTAGTTGACACGGAGATACGATGTCATTTCAGCGAAG
ATCTTCACCGACAATGTGGAGAATATCACAGTTTGTTGTACGCCTTGACA
GCTGAACAATGTCTTCAAAGATGTGACGAGTCTGCCAACTGTATCACAGg
tacgacgttgtttcaacgtccatttaacgttatatggatgttgtgaatat
tagaaaaacgttgaaacgacgttgtgtatCAGCTGGGAGAAAAGAATCAT
TGAGATTTGCACCTTGAAATCGTTGATTGCTAGCATATCATTTAGCTTTT
CTTGTCTCTTTCCACAATCTGCAGCGGGCTCAATCAGACTGATTCAGGAC
TAAAGAAATTAAAATCTCACTCCCTCTCCTTCCATCATAGACCCACttgg
accccagccccactggaaaaataccTTACAATCTCATTCCCAGTGGGGaa
tcgactttgatttcatccccattcaaaatttaatgtaaaaaattgcactc
caaaaccatccccacggATTTTTTGACttgggaacaatagaatttttatc
ccattgggtttttcttcttttttttctttttttcaccggggctttgagac
aggggtgtatatatGAAGAATTCTCGCAtaactttgttttgtttttaagg
tCACTGGCACCCTCCTCGTCAGATTTGGAGTGACGAGGCGCGAACAGTAT
GTTTTTTGTTCAAGAGAGACGATATTAATTTACACCCTTGTCCATGGGGC
GACGAAGCCAAGAACTCAGCACACCCAGGAGCCAAGATGATTAGATGTTC
AAATAAAAGTAAGGAGATGTTTTACCTGTTtttaaaacaacaacaaaaat
taccTTACAGTTATAGAAAATAAggaacatcataagaacattttatttgT
AACGTTTGTTTATAAAGTCTGTTTGCAACGATATTCTTATCGCCACCAAT
CTTATTGGTAGaaaaagatgtcacatgactttccgtggtaaagaatgaaa
attgcattcctttttttttcagaaaatgggcCAATCGAGAGATGTACCAT
GAGCTACGATTTTTTGCGTCATTGTGGAAACGCTTTAAAATACATCTATG
GTCAAAGCCCTGAATACTGCCGACAATGGTGTAATGANACAGTATGTTTT
TTGTTCAAGAGAGACGATATTAATTTACACCCTTGTCCATGGGGCGACGA
AGCCAAGAACTCAGCACACCCAGGAGCCAAGATGATTAGATGTTCAAATA
AAAGTAAGGAGATGTTTTACCTGTTtttaaaacaacaacaaaaattaccT
TACAGTTATAGAAAATAAggaacatcataagaacatttttgtaaCGTTTG
TTTATAAAGTCTGTTCGCCACCAATCTTATTGGTAGaaaaagatgtcaca
tgactttccgtggtaaagaatgaaaattgcattcctttttttttcagaaa
atgggcCAATCGAGAGATGTACCATGAGCTACGATTTTTTGCGTCATTGT
GGAAACGCTTTAAAATACATCTATGGTCAAAGCCCTGAATACTGCCGACA
ATGGTGTAATGATAATAAGAAGTGCCATGTAGCACACTGGCATCCACCTT
ATTCAATATGGGGCGATGAAGCTCGCTCGGTTTGTTTCGTGTTTCCCCAT
GGGACTCAAAGTTGTGATTGGGGTGGTGCAGAACTGGGAGATTACCATAA
AGGAGCTCACATGGTTCGATGCATGTACCAAGAATAGCTTACTAAGCTTT
CTGACCAGTATTTTTTTAAGGCCTGTATATATGGGAAAcgtgaaaaacgt
tttttctttatttttctatttttctagcTTTGTATGTATTTAACTATTTG
GTATGCTTCGTAAGAATTTCAAATATACATTTACCATTTAAAAATTGTTG
ATCAGCTA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00048323TCONS_00048323Clytia hemisphaericatranscript
TCONS_00048324TCONS_00048324Clytia hemisphaericatranscript
TCONS_00048325TCONS_00048325Clytia hemisphaericatranscript
TCONS_00048326TCONS_00048326Clytia hemisphaericatranscript
TCONS_00048327TCONS_00048327Clytia hemisphaericatranscript
TCONS_00048328TCONS_00048328Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00048324-proteinTCONS_00048324-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:892311..895868 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.55	1.42	0.52	0.3	859.44	752.3	678.75	570	334.88	631.95	451.85	437.94	5.17	2.82	0.87	0.25	0.34	0.47	0.67	0.26	0.07	0	0.41	0.37	0	0.15	0.21	0	0.26	0.14