XLOC_030853 (gene) - C. hemisphaerica

Overview
NameXLOC_030853
Unique NameXLOC_030853
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_143:374775..378736+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030853 ID=XLOC_030853|Name=XLOC_030853|organism=Clytia hemisphaerica|type=gene|length=3962bp|location=Sequence derived from alignment at scaffold_143:374775..378736+ (Clytia hemisphaerica)
CAGACGCTACAACAATCTTGGGTTGGAAGTTGTCCAATAATAGTACAAAT
TAATACTAGTGTGTGACTGATTGTAAGAGCCAGGATTTTACTGTGTTCTT
AGCCCAATTCATAAGATTATATATCAGTGAGAAAtagcaagcaaaaaaaa
accaGTGATAATAAGGACAAGGTCGAAGGGGTCAAAGTACATTCCAACCA
TTGgacaaattaaattttcaactGAGGTCACAAACTGAATTTTTAATTGT
TTGCTTTTCTTTCAGTCAGCAAAGATAATAAAGAAaatctgtttgtttgt
ttatgttCTGGTCTACGTCAATTTGAGTTGGTTGAAACAAATTGAATGGA
GATGGTAAAAACCAAAGATTCACCCCCGTCAAACAAAAAGTAAGACAAAT
TAACTTTTTTCATTTAATCAAACCACTATGCTTTACAACAGATGTCTGAA
TACATAATGGTGTAAAAACCACTTTGGTCCAATAACTTCATTAATGTCAT
TCACTGTCATTTTTGACTGGATACACAGAATACCTAAGGTTTCTCAGTAA
GAATGAAAGTAATAGATCTTTTAGAGCACATTAAGTATAGTCTCATACCA
CTGTATCTGGTATCATTTTTACCGACAATAGGTGAAGTTAATACTCAGCC
CTGGAtggaaaaaaacataaacaatgtAAGGTCGGCTCAGAAAAATTAAG
CCTTAATAAATTTGTTTATGGGATCTGTTTTTTCTGTTTCCATGGTTTAG
GTTTTAAACACACACCTATATACAGAACATACTGTTCTGACCTTCTTCGT
GAACAGAAAAAACTACTTAAAAgcggaaatgaattttaatctttaaacta
tttttAACACGAAAATGAAACATGAATGATGTGTTACACAATTTTAATTG
TTGGTCAGCTCATGATGTTTTCAAAGTTGAATAAGCTTGTTGAATCATCG
CTAAGTTCATTGTTGAACCATGAGCACGTATCAAGGCCCTGATCACGAAA
ATTCGAAGGCTAGTAATCAGAAAAGTTCAGAGATTTAAACGAGTGTACGT
TCTAGATGTTACTCAGTTGAATCTCATTCAAACAAACTTCAAAGGGACCA
AAATATATTCTTCGATTAAGAGGAAAGATTTTAATTAGTTGAAAGATGAG
AATAACAGGgacattaatttttaagaatttctaaATTGAAGGGACCACCA
GCTTCACTCTAAATAAAGAACGGCTTGATCAATAACGATACCAAAATAGC
CAGAAATGACTGTACTTGCGGTGGCAGTGTCTTACTCATTGCTCTTACTA
TATCTCTATTCAAACTACCATTCTAGAACGAAAATCCACATTCTTTTATC
ATCACTGAAAACTAGAAAAACTCGTTCGTGCACCACGAGACTTAGCGATA
TTTGGCAACTCAAATGCATAGCATAGCAAAAACTCTGTCAAATTTAAATG
ATGCAAAAAAGGCATACCAGGTCAATGATGGCGATCAATTTCATGCACAG
TACGCgaaaataaattgatttaaGTACAAAGTGCCTTTTCAAAATTAATC
CCTAACAATAACAAATTAAGTTCAGAAAGTTATTTCTTCAATTTAAATCA
CCCTTAGATATCACTTCATATGCCAAAAAAGGACAATACAATGAATATGC
CTGACACGTCTCTTTTTGTTAGGAAAAATCTtcattgaaataaaaacatt
gcagCTTAGTTGCTTCctctaaatgaaaaataaataaaccgTTCCAAAAA
CACGAATTCAACTCTCCAAGTAGGCAGCTACTCAAAATTTGGACTTTCAA
GACTATTCTGTGAGAACCAATCGACCATATATTTCACATCACGTACatgg
tttcttataaaagacctttcatcaaaaattggaaaaattcaaCTTAAAGT
ATATTTGCATAAGGATTTATTGTTGCAAGACCAaggagaaaaagtttttt
gaaatcacATTGTTTTACTTAATCCCCTACTCATGTATAAGATTGATACC
TTTCCACATGTCAGTATAAAAAGGGAAACAAATTCTGATGAAAGTTAATA
AACGAATACATGTGAACATTATAAAGACGAGGGCAAAGAGAAATGGGATT
TACAAAGAAACTATTAAGGTAAGATGAAAGATGAAAACAAGAAATTGAAG
CAATCATAAGGATAGTTGTTCGAGTTCTAAATTTCAAGGTTCCAAAGGGG
AAGATCATTTAGCCGTTATATGTTAGTGGGCGTAAAAACCAGACAACAAG
AAAATTGTATCTGAAGTTCTTAGTCTATGAAGATTTTAaccctttttctt
ttcatttatttttaggCATGTCTTCTCTGAAAGACTTATCGACAAAATCC
GTGAAAGAAGCGATTCATTATTTCTCAGTCCCAGTCCCCGGTTAAGTCGA
AAGCGTGGTAGCAGTGCAGGGCCATCAATAATCGAACCTCAAGGACATCA
AAGAATTGTGGTTTTAGGACCGAGCAGTGTTGGAAAATCAACCATTTGTG
CAACATACGCCGGTGTAGATTATGATTTAAGTGCTTTACGATACAGCAAG
AAGAATGAGATTTACAACAGCGGTGTATTTATACAAAGCGAGACGGCAAA
CCATGTTAAACAATACAATATTGAAATATCAGTTCCAAAAGGGACACGGT
GGGACGGTACGGTGAATGGATATAAAGAACTTTTATTAGAATCTGATGGA
TATTTGTTAGTGTATTCTAAAGAGAATAGACAGAGTTATATGAAATTAGT
AGAACTTGTGTCCGATATACAAAAACTACGGAAATGTTGTATTCCGCCTA
TTGTTGTGGTTGGTAATAAAGACGATTTGGATTTCAGTAATACGTTAGGT
ATACACGATTCAGAACATCATGTTTTAGGAAGCTTTCCGCATTTCAACGT
GTCCGCATTGGAAAATGACGGACTTCAGGAAGCTTTTAAATGTTTAGTAC
AAATGGTGgcacagcaaaaaatcttgacGCTAACGTGACATTGGTGACGT
AAAATTGACGATGAACCGAAAGAGAGATGACAACGCTTGAACAGATAAAA
TAACACTCAGTTAATACAATGGATCCCGCGAGATGCAGAAAATTTATACA
TAATTCTCTCCGTTCCAAGTGGAGATTTCGAATGACTTTGTTTAGAAGGC
ACTATTATCATAGTTCAACCTTTTTGACAAATGACTTCAAAATCATATGA
GAAGTCATGGTATGAACGCCCTGGGATCACAGACATGATTCAAAACATTC
TTAAAGCATGCGACGTTCTTTTAAATTTGAACCAAATACCCTTATATGGA
AGACTTACTAAAGGCGGAGGAAGACACTATTTAATATGacgagaaaattg
aaaatttgtaaattgatatTTAAAACGGttctttttatttatgtttaaag
ttttttatatttgttttaATTACATATCTTTTGACTGACTTAATATGACT
TTATAGCATGATGTATATACAAAGAGAATTcgacaaatcaagaaaaaatg
gCATAGTTGTATCATTTTATGTATTTAGATCGAATCCAGTCCAATCCAAA
AGCAAGGTTGTTTTTTACCGTCCATGTGAAAATAATAGATTCAGCTGAGC
TCAAATATCCATTTTAGAAAATAACACCGATGTTTCAATCCTTATACCGT
AAATGTACGAATTCTGCGAATTGTGAACCTTTAAAAAATGTCTCTCATTT
TTAATACGTAATATGGGGTAAAAAGGTCATACGGATAACCAATATTGTAG
TAGCCTCGATTCTACTATTAGTCTTTTATACAAGCAAGAAAGCCCCCTGG
TTGCAAGTTTCGTAGCAAAAGCGACAAACAAAACTGAAATTCGATACCAG
TATGATCCATTGTTACTCTGCCTCTGCCACGATAGGGTCACGAGCGCATT
GGAAAGCCGAAACAAAAGCTCCCAGTTGAATCTTTTCCGATGTGCCAGCA
GCTAAACGGAAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00048510TCONS_00048510Clytia hemisphaericatranscript
TCONS_00048511TCONS_00048511Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00048510-proteinTCONS_00048510-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:374775..378736 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.08	0	0	0.17	0.07	1.75	1.3	0.57	1.89	0.41	0.96	7.13	9.08	4	1.8	1.26	3.18	8.64	10.96	0.75	0.96	0.41	0.09	0	0.14	0.48	0.53	12.88	10.45