XLOC_031862 (gene) - C. hemisphaerica

Overview
NameXLOC_031862
Unique NameXLOC_031862
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_169:450546..460369+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031862 ID=XLOC_031862|Name=XLOC_031862|organism=Clytia hemisphaerica|type=gene|length=9824bp|location=Sequence derived from alignment at scaffold_169:450546..460369+ (Clytia hemisphaerica)
GTGATTTTGACCTCCAGACAACCTCCAGAACAGCAAAGAAAAGGTATAGG
ATCCAAAGGTATATctgtaattttaattttatgtaCATTTTATGCCTATT
TTCagtaaaaaaagaagacaaagtTTGCAAGAATTACAgcatattttttt
ggaaaattggggtAAATTGGGTGGGAGTAGATCTTGTATTTTCTAGTCTT
TGATCTcaagttttctttttgattatcaccagacgatctcaatcgaacgg
aatcgacgatcgaaccagtcaaaccaaatcgaacgcaatcgaccgattga
aattcgattgtcaatcaaacgtcaaaattctgggtaatattcgattggtt
cgattgttgttcgactggttcgatcgtcgatcgattccgttcgattgaga
tcgtctggctttattcttgcagcttcccaacatccaagctctcaaacatc
acaagccgaatgaaattactttcgattttctgtagaaattatgcgatgaa
caatccgggggtcaatgaatcgacgatcgaacgcaatcgaacgcaatcga
acatcaatcgaacgcactcgaatatcaatcgaatctgaaaattgcggtaa
cattcgattgagattcgattgcgttcgataatcgaatttcaatcggtcga
ttgcgttcgatttggtttaactggttcgatcgtcgattctgttcgattga
gattgtctggttaTCAGTTGGGtgtttttaagataaaaacagcAATAAGG
GATCcccgacaaaaaactttcaaattttttatcggAATGCCCGAAAAGGG
GGCTAGGAGTCCAACTATATACCGATaaaaaacaagtattgggaCGAaaa
gccaatttctttctgatttcgtccTCAAATTCCACTGAAAGCATGCAATT
TTCACTTGCTGTCACCTTCGTGCACAAATTTGCaactttacaaaaatatt
tttccattgcCAGGCATTGTCAATCAaactgtttgattaccgaactaatc
gaaccctatcgaacgatTGCTGTTCGATTAAGGAACCCAATCGAACTACC
TATCGAACAAGGAAAACCTTCGTAAAGTTTGACTGTTCGattcagtgaag
tcaagtttgaagatattctttattagaaaaacagttaaaagcagtcaaaa
cgcaatttcccttacctcctgagtttgtctttgttatgctaaaatataac
aaacctttgtcctgctgtctaattacaaaaacctccaatcactacttctc
cgccatcttgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcacttctccg
ccatcttgtttcactttaaatgccgtgttttaaaattccttagctacatt
atatgtacggaaaaggttttctccaggtttttttcAATCTCGGGATTAAA
CTTCGAGGGCGGTTCCGTccacttatttttatttcggCGTTAAGCGCCCc
gggatacttaacaataaaagagattttaagattaatgttgaaaagcatat
tttttcgataaatttaggcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCAAAGATTATATTTCCGCCttgactttcactttcgctttcgtgt
tacgcgattccaattggatgaatacTGCTCGCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc
tgagcgtgaattctgattggatgaatacctgaaaagtaaacaatagtatg
taagtattttgcttatcaaaacctaaagatttccagggggttttatttac
tttacatggcgataattaagcctacaaaacaccgagaaaaaaacccaaca
tagaacaggtgtattttgtaatgtagaatatgatagcgtgaatctttttg
aTATTCTATGTCAGGATTTGTTCTCAATGACCCGTAACTATGCCcggggt
acccgttgctaagaccttatgttaaaaacgaaagcgattacggcaaaaag
tagcgattttcgtaatacctcaaatattcaTACTTGAGACTGTACTGCGA
TTATACGATTATGTATAGTTCGATATTGTTCGATCACAGTTCGATGAATC
CGATTGACAAGCTAGCtgtaaaacagcatctaataacatgaaaaagGACC
CTCGCGGCGTTCCGGAAACGTCTGGAGCAAAAAGTGCCGTTTTTATCATG
CTCCGGAACACTGGAAGATTCCGGAGCACTTCCGGTGTTCCGGAGATAGA
TTTTCGGCAATTGGTCTGCACCGGAACTCCAGAACGTTTCGGAGAAGATA
TCCAAGATATAATTACGATAGCGCTCGCTGTGCTAATCATGTGAAAACTA
CTGCGCACgtgcatatttttaaaatatcagctgactcacattttttaatt
ttttcgatatTTCCACCATTGATGCTTCCGAATataatgtgacaaattca
atttcatttaatGGCTGAACCATCATATTGTATCAATATTTCGAATATTT
TTTGTAATgcttaaaaaacagttttttatcatgtgttaaaaatcacttgc
tcctGAAGCACCGGAAGAGCTCCGGAACTTTCCagagagaaaaatagtgt
ttttttaacTGCTCCGGAAAACTCCAGAAGTTTTCGGAGTGCTGGGAGGG
TCatcatgaaaaccagaatatgattcttcaatgggaatcaaaactataaa
gtgcacttacaaacatcaatttgtcagatctaacaaaatcagtaaccgca
ctgtcatcattgacaataaaacaaactattttctgtcaagagccttgtaa
taattccaacaacttccatcgaaatgatctatcacagctcaatCAACCAT
TTTTAGCgtggtccgaggattgagccgagaactttTGCAGAGCGCTTGCA
GAACGCTTGCAGAACGCTTGCAGAACGCTTGCAGAACGCTTGCAGAACGC
TTGCAGAACGTCTGTGAGTTCTCGCgagggtgaaaaacttcaatctgtca
ctcattttctcaagcgaagagaaagcaaaataaattctagctttacgata
gtacCGTGGGGGAtgatcaatggatagtattcgattatcattatcccttt
attttcattcctagaacttttgcaaatgaaaggaaaaatagaaaagttgt
attttttactgctctattcacatactgaattgaaagatcttctatgtgac
gtttttttgcaaacttcaaaaaacttatttttgtgCCGCCTTTGCAGGAC
TTTGACTTAAGTGCTTGcatgcagcatagggtacaaagtccaaacatgtg
TGAGAAAGCGGAAAACGCTAGTGTGGGTTGGATAAGATCGAATGATAGGT
GAAGACATGATGTTATAAAAAGACTgaatatatttgacaatgaagaCATA
CTAAATAATCCCTAACTTTATCTTAGCTGATCTGGATTATGCCAATATAT
TAGTTAGATGAATTTGAATATGAAGATTCATGGTTGTCTTGTCGATGGTC
AGGCTTCAACTGTCCTTGCTGGAGAGAATGGACTCTCAAAACCACATGGC
ACAAGGAGGAGAGCTCACTCGGCCCAATCTCCCAGCAAGGAACTCAAAGG
AGAAGTGCACTGGGGGTCAGTAGAGATCTAGACTAGCCTCATGTTCAAAC
AATGATCTCTATTGTCAGGGCAAGATGGTAGACCTAGCCataatatatat
tatacaaACATATTATCCATGTAACATATAATACATCCTATAACATACAT
AAAACTTTCAATCATAATATATATAACCTTAGTTCTGGTTCCTTACACAT
gcatttcccgtaatttttgtatgaagagttaggcagtgctgcaaataagg
aaatGTGAGTTGGCCGGCAATTTTTACGAGCGTAGCATGTAAATTTTGAG
CAGGGGGtctgagaaaatttttggagTCTTACATtggctaaacacctatt
ttaatttaaaatctgTTCCTCTTTTATAGCGGTATTAAGCATCTAGTTGG
GTTGTAAAGCACTTTTTTATGCTGCTGTCAGTCAGTGTTTCTTTaatcaa
aatattatatataGGCATGCCAAAGCTATTCACTACCTAGAAAGTATTNG
TGTTTctttaatcaaaatattttcaggcaTGCCAAAGCTATTCACTACCT
AGAAAGTATTAATATTGCCTATAGTATTGTTAGGTGCACACAAGTAGGGT
AGTGTTTGTAACGAAGAAATTTAGATAGGTCAGCTATCTTTCAGTGATTC
AAGCGTTCAAACTGTAAAATTAAATAATGACAAACATAAGAAACTAGAAA
GAAAATGTGAACAAAACTAAGTTCTAAAGCTAGAGTGAGACTCGTACGAG
TGAAATGATTAAGTCCAGATCctataccgggtgtgccacaaaaagttacc
ctctttgatttgatattgcaggcagtagaaaagagatttttcaaagattg
tttccgaatcattcagaggaaagcctaacttaaaatttggtgtatcactt
tttaattttacttcattggttcaaaagttatgttcaaaaatctaaaatgt
caatttaaaaatatgtcaaaaaaaggTTGTAAATACGAAGGAACCAACTT
TTTAGAGCAGTTCTTATAATTATAGTTTGGTAAGTATGAGGAACTAAAAA
GAAATGTAAttaaattgattaaaaattacGAAAGAAGCCTATAAATTTTT
ACCGGACAAAGTGAAAACGTAAGCTTCAGAATGACCGGTAGAAACTACga
aatgaccggtaattaccggtcaccggccgttatttgcagcactgttaggt
ctatactgattgaggttcgatcagttcgattaagattgatgaagtttgat
tggttcgattagttcgatttaTATATACCTTGCcccccaattttttattt
atattcatTCCGAGAGCATATTGGCGGCTGcccagcagattttttttctg
tacATGGACGGAAGTATCATCAACGGTCGGGAGTAcctcatctttgttgt
ttggttttgttttttggaATTGCTTATGTCAGGGTTggtagtaacggctt
gtcactgtgccgggtgcatactcagtgtagctggaacctcgatattccag
gattagaaaaagctatacctgtcggcaaaaagaattttcccgggggtttg
aggaataaacagaactgctgtcatttgttttttatttaaccatatattta
aatttgcactcaaaaatacttaaataaataagttaataatattcaatata
ctatttgtatctctcagaaaataaacacttacagaacgacatagtttatc
atttggaatacccccgtgtttggaccattgTATTGTGGTCACAAAATAGG
GCGGAAGCTAAGTAActccctcagtgcaagattgtcgcctcatctttatt
cgcccatgcgagaatgcgagctaatcattttttctcgcgcgctcaagggg
aaaaggaaagtgattgatattctttgaaggaaaaacgtcagaaacaaacc
caaagaccaaaagatgtaNNCGGAACGCTGAAAAAGTCTAATTTcaatct
tccttaaggtaaagaggttgcgagatttggattagcgaggcaaaaattgc
taaaaagctggtaaaattgtaatcctcaaaaatcgaagttcaaGCCTCAA
tgatactcggcgccttgggccccgcagggttgctagtaacagCTGCCCAC
AAGCCATCCTCGCGGGCCATCCAATATCTATCCCAtcggatgggacaagc
tggagcttttacTAGCTCTTTTacgatttggttggtcgttggtcgatttg
taaaaaaaaagatcgtaatttttggacctacctccgggtaccccggtgga
ggttctataaattaacccatgtccgttcgtccgtccgtccgtctgttacc
agcttttctcaggattgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtg
gctgaagtggtttttcccggaaaattcttattcgccttaaaaaacggatt
ttcgtattttggggaaattccctttaaccaaatgagaaaatatagctttt
ctcaaagttgactcattatttttttctgattttttgcagaatgatgcaaa
atgacaatgcctaaaatgtgacggagccagatttttaaggaaaatttttt
tgggcaaatttgggccaaaaacagcttattaggttttttgggtctgaatg
gtttaagtgattttcgtatttggggaaattcctttttaccattttacatt
attcaacagacaagctttatttttccattctgaatttttgtacaattatt
gtcacttttttctaattttcatctgatgttaatcattaggtaggtccatt
cagcatgttgcttgttattactttctttaaagaaagtgcCATCTCTATTA
TATACTTCAAATGAGCAATGAGCGAAGCATACATATTAAAAAAGCTTGAA
CatcaatcaaactcatcgaacatcaatcgaaccctatcgaactTCATTGA
ACAAAGAACAGTCGCGAGATCAACGCGATGATTGACATGATTGGAGAAAA
TTGTGTTTTCAAAGAggtaaaagtttgttttgaaaattttggccgataag
agcaagggggggagggggtctgaagcttatTGGCCCAATGCCAAtaagaa
atttgaaagtttttttcgaaGACCCCTTATTGCtcattttggcaattttt
ttttttacttttctgctgattcagcatttcattgttgaaaaaattgccgt
tttcggcaataattgctcaaaagagcaataattgctgtttttattttaaa
cacCCTCAACTGATTATATGTTAACACGTTGGCTAAAGACCCATCGGGTG
CATGACTAAAAGAGccattccagaaattttctgtATTCATGATATATACA
CCACTCAAGAGTCTTcagagaacttttaaaatcttccagaaaaagtgacg
tattgggtggaaaattttaaaatttctcaaTCTCAGCACTCAGCTAAGGC
aaaagactctccagtggtgcatatcatgaataccccCTCTGGATGACACa
actttttgcaaaatttatgCCCTCAAGGAGAGGAGACATTGGAAATTCCA
CATTtctcatttttgagaaaatgccttgtaatttgatcatttttgagaaa
aagccttggaaatttatcttttttgaactttaggcttggaaattttgaat
ttatcaaAAACGATTTGcccttaaaaatcttttgtcgtCTGCCCCCCCCC
ATATATCAGATATATATATGCCCAAACTTTTGCAGGCCACTTggcaattt
tgaattttaaagagTCTTCAGAGGCAAAAATCCATAAGTTTGTGGTCCAA
ATTTGGCCTGATTATGTACAGCACTTAAAATACATAAGAATACTTCTGAT
GATGGTGATAAAagcttgaaatttggcacagatgacccttagagggttta
aaacttaattttaaacaataaCACAAAATTTAGTCACCTGACCAACTGCC
AATTAATGTAATCAGATGGCTGagtaagaaatttattttttgaaaatatt
caaaatctgatggtcaCAAAGAGCAagaaattctgatgaaaattgaggta
taaagcacgttttgaaaatgttctaaCAAAAACTTCATCAgtctttccag
gcaaaacttaaaaaacctTATAATGTTGGAacatttgaccaaattttatg
ttttatataagaattcATATACATATATCTGCAGACACATGTCtcgtcct
tcccaggactcatcAGTGCTGCTCAAgtaagcgagcatagactgctgttg
tcaccagagtgctGAAACACCATGAGTGTTGAGCTTtgcataatcgcttg
tggtaagCGGAGAAGCAACGCTTTAAATCAGATGCCCTCATCAAGGGGTT
GTAAACATGATTTTTTGTCTTCTCCCCTGAGCAAAACTACctctataata
tttttttaatactttATAATGCAAAATAATAGATATAAATGAATGAGCAG
GAAAGTACACTATGGCTGGTTATGATCATTCGAAAGGAATTGGAATTAAA
GAAATCACTGTTGTTGAAGTCAGGAATCCAATTGTTCAACATGAAGGTTC
ATTGAAACAATTCACAGACTATGAAGTCTGTATAAAAACAACAAGTAAAG
CTTTTATCATTCCCCAATCCTCAGTAAGAAGGAGATATTCAGATTTTGTT
TGGTTGAAAAAATGGCTGGAAAAACAAAATGATGCTTTTTCAAGAGTGAG
AACACCTAAAATGCCGCCAAAGAAACTTATGGGTAAGACTGATCCAGATT
TTATTCAAGCCAGAATGCGTGGTTTACAGAAATTCTTGAGAAAGATTATT
GAGCACAATGTCTTTCTTTCAGACAAGGCTCTTCATCTTTTCTTACAAAG
TACCATGAAAGTGAAACAAATTGAATGCTATTTGGTTGGGAATTCAACAA
AAGAGTTTGTCGATAACAGTGATGCTCTTGTATCTCATTTTGAAGCTGAA
AAGAAGCAGACTACTCAATCTGTGCTTCATAGTATCAGCGAGAGTTTACC
AATTGAGCAAAACGATGATAACCAGAGTGAAAGCTCTAGATCTAGAGCAG
CAAGCTCCTATGGAAAAAGCCCTTCCTACAGTGCAAGCTCAATCAGTACT
AACTCTTTGTTGGACTCATTTGAAGCAATAAGTGTTTCTGATTGTGAAGC
CAATGACCGTGAGGAATTGACGTCAGTTGCTGTTATAGAgcatttgaaaa
taaaacaacttGTGCGTGAAAGTGAGAATAAAGAGGAAAGTGATGCAGAT
AGTTTGAAAGGAATGCAGGAGgatgaaaagaattttgacCTTTTGGATGA
TGAACCGGTGAAGGATAAAAACAATGGTTCTCAGAATAGTCTGGCTGAAT
GTGATAGACAGGACAAATAACATAACAAAATGttactttaattttttatt
ttgatataaaacatatttttctaaaatatagATAAACTACTCTTTCAATC
ATAGGGTTTGGGTGGAAAGGCTCTTAAGGCCATGTTAGACACAACATTTT
TTGCCAACATTTTAgagaattttctaaaaattggtaTAATTTTACCATAT
TTGAGCGTGTAAACATGTCTTCAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00050326TCONS_00050326Clytia hemisphaericatranscript
TCONS_00050327TCONS_00050327Clytia hemisphaericatranscript
TCONS_00050328TCONS_00050328Clytia hemisphaericatranscript
TCONS_00050329TCONS_00050329Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00050328-proteinTCONS_00050328-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_169supercontigscaffold_169:450546..460369 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08	1.21	0.64	1.16	12.33	8.66	11.99	12.49	9.24	10.03	9.68	5.52	6.76	4.39	7.87	7.2	6.39	6.37	5.74	4.89	8.54	6.4	3.47	5.53	7.16	6.75	3.13	1.77	5.78	4.82