XLOC_032554 (gene) - C. hemisphaerica

Overview
NameXLOC_032554
Unique NameXLOC_032554
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_201:122541..127989+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_032554 ID=XLOC_032554|Name=XLOC_032554|organism=Clytia hemisphaerica|type=gene|length=5449bp|location=Sequence derived from alignment at scaffold_201:122541..127989+ (Clytia hemisphaerica)
AAGGAGAGGCGAGAAGGGAAAAACACCTTTTTTCTTCAACAAGTCAAGAC
CGAGTATgtacttttctctttttctgaTACTAATGAAGTTGTTTTTAGTT
TCAAAACATGTCATGTCCTGACATGAGGatttaatgttaatttttcgGCC
GCAGCAATATTAGACAATATTAgactttttaaaggttttctaaGGCATTA
Aagggacatgttttttaattcttaccaaaatgacattttaaaaaattcta
aattttgaaaaaagcaatttaggggtTTTTAATATTAAAAAAGTGATTTG
TTGACCTGATATGAGCTATTTTTTAGCATTTGACACTATATTCTAAATTG
CTAATTTTGTGCATATGAGCATGAATTTTCTTAATCTGACtgaaaaaatt
gttatttgGATAGTTATTTTGAATGCAAATTGTTAAAGGGCCCAGATTTT
CCCGTTCTATGGCCCTGTTTTGAGCCAGTAATTAGCAACCCTATTTGAAA
GAAAAGCTAATAATTTGCTCTAATTAAAGGACCTTGGAACTTCAAAAGTG
GTATATTTGAGTTTTCTACACACATGCTAATAGACAATGAAGATAAAACC
AAGAATAAAAACGCCATATGgttaaaaaagagcaaaaaattaGCTTTATG
GAAGAAATGCTAAACAATTGCTCATTTTGGGTCCATAATACAGTAGtttt
attctaaatttattAGAAGTTAGTTCCTGTAAACATTATAGAATAGACTT
TCACTTAAAGAAAATGTAAGAAATTataaatgtttccaaatttaATGACT
AAAATAAGATATCATAGTTTCCAGAATTCGAAAATAGACCAAAGCTAAAT
TAGGCCTTTTAATGACTCTATAATCATAAATTTGGCTTTTTATCAATAAT
TAAGGGCTTAATAAACATAATTGATCAAAATTAAAGCCATACTGCAGTTA
TTTTTAGCACAGTGAGAGGTTTTTAAAAAGCAACAACCAGTGCTAATTAT
CTGCTCACAATTAGGCCCTACAACCATTTTAGATGCTAATTCATACGGGA
AATTATTTATAAAAGGTGTATGGGTGTccctgcaaaatttcagctacATA
GCAGTAGAAGTGATAGAGTTATGTAGAGTTAAAGTTCAATGCTAATTTTT
TGCTCGTGCTAAAATGCTAagttattggtatatattttcgcgtgttacaa
attttcgcgggtacttaatttcgcaagttttttggtcaattttcgcggaa
tttaatactatttaaatttttcaaaattacaaaatcgcgaaattaaatac
gcgcgaaaaattttttcttagtattttgttagtatttttacatcaaaaac
gttgtgtttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTGCAAATAAGTTaaagatcgaaagttgtttcgagatgtgacct
cacattctattgattttgtaaacaaaaaaatagcaaagttgatttcgagc
aaatttacaatcgaatgttttgattataagataTAAAACGTAttgaggaa
tgttttttttttattcaatgtattttcattatttcaaaacctttttctaa
tcgtgtcgcacttgtttttactacatcagcatcatcaaacctttaaatca
aaacaaaacgaaaTTTTAGTATTCCAGAAGTGGAATActatcaaatcaaa
agaaaattcaaaaaaaatctgaaaatgaaaaataagaaaatcaacttctt
ttaGAGTCGTGCTatgatcttgatttttttattcaattcttCGATCTTTT
AGAACTTCATGATACCCCCCAACTTTTTTCCCCTGATAAGGTATTTCTTT
ATTATTGCTTTGAATTATACGAacttaaaaatagtttttaaaaaGATCTG
TTATCGTCGTTTCAGGATTTATTGCGTTAGGATACGAGAAGGAAACATCA
AAAACCATTCTCTCACTATCCTTAACATATGCTGATTGTTTTCATCGATT
TCATCCATCAGGCTAGTCACGAAGAAATCATTCATCGTCAGTCTACAAAA
AGAAAGGGGCGTGCGTTTTCAAAGTTCTGCCCAATTTCATTACACTTGCT
TGGTTTATAAGAATCAATCATGCTCTACTATAACAATACaacttttataa
gcaaccaaaCCACCGAAAATCCACTCGTTAATACACTTCCAACGACGCGA
TCATTCCCAGCCTTCTTGGTTGTTTATTTATGCTTTGGTTGTGTTTCACT
TTTCGGACACGCACTTGTATCTCGGACAGTTTTTCATCATGTCACCTTGA
ATTATGCACCGTATCATTTATTGATGAATCTAGGTTTGTACGCTAAAATG
AAGTATACTTTTTTACTCACTCTTGACCCTTTCGTACACTCTCTGGTGGT
GTAATGTCAATTGGGGTTACTTACATAAAAGAGGGGTAACTTTCTTAGCC
ATTGCAAACAGCAGACTTTTCTGGTCAGGGATTTATAACTCATGTTGCGT
CCAAGACGTTGAACGTCGGTAGAATAGAATATAAACAAGTGAAATTGTGG
TTTTCTGACTAATACTTAAATCAAGAACCAGATTAAGTTGTACTTTGGAT
GCTTTGAAAGTTATCCCACATTTATaaaaagtgagtttatgtatttgctt
TTTTGATGACGGCGGATTGACTGAAGCGATCGATTTGGAATATTAACCCC
CACTTTTGACCCGTGAAATCAAGGAcgagtgctgatttaccgtcgttcta
agtcaatcaggatctagacaaatcagaagctaaccgtctccATCGTAGAA
AAAACATAAACTCGCTTAACCCCGAATGACGCACCTAAAAAGGGTCCTCC
tattaataatttttcaaatgtcttAAAATCCTAGATTCAGACATTCTTCT
CTAGCTTTCGGTTTTATCTCAATAGCTATATtcataaaaatcactttttc
tCGCTTTCTTTTTGTACGACCCATAGGTTTATGTGACGTTGGTTATTCAG
CTATTGGAATGCTCATCCTCATCATATCCACACTGACCGATTCAACCATG
GATGCACCTAAAGCATTTTGCCGGATATGTTTCATCGCTTCTATCTTTAC
GTCATCATGTCTAGCCTACGATCGTGTACTCAGTGTTCGGAATCTGTTCC
GATACCAACACATCGCACAAAAGAAAGTACCCATCCTAATGATCACATTC
TCATGGTTCGCTGCTTTGTTTTGCCAAATGGTCATTATGATTTTCGAATA
TGCGCCATCTACAATTTTCTCTTACAGAGGATCTCGGATACCCATGCGTT
TCAGCGCCGCCTTCATTAATTCCCTAATTATCACATCAAATagtattttt
attgtttattgtcTTTTATACGCACGTCAAGTCGCCAAACAAGAGTTAGC
ACGTCTTGGAGGGTTATCGCGTTATTTGCACGGTGAGACAGCAGAGTTGT
ATTTCTCATTGACGCGAcgtcaaaaattaaataacGATATCACGATTGTA
TCTATCTTTTCACTGGCAACTTTGATTCCACCTAACattacttttttgaa
gattttcatccGGCCTGGCGACAATGATGCATCTTTATTGCTATTTAATT
GGCTAATTGGAGCAGTCTATTGCGCAATAAATCCATTTGTGTACTTAAGA
TGGATGCGAAAGTTGAAACTATGTTTTGTCAGAGATTTGGCAAGGATACG
CCGTTTTATCAACGTCAAAAGAAATGGGAGAGTTAGACCAACTTGAGTAT
GcttaactttaaaatctaaatatttAGAGCTCAAAATTAAAACGTTATTT
ATAGTTAAACATATTTAAACTAACTTTATCCCGTAACAGTTACCGCGTca
ttagtctagcaagctagacgactaattcagaaatagtaaaaataaagcaa
aaagtaatggagggaacaattattatcttatacaaactaaattcaataac
aataatcgtattatcatataacgcctatactactgtattacacgcattat
aagcGACTCCAgtccacagatatctaagcccgaagggctagataagcaac
tttaagctttctccagcaaaaaaaagtgaagctaaaatttgactttttaa
atttcgtgccgatggataggatctagcattttaattgttttcggagcgc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00051372TCONS_00051372Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00051372-proteinTCONS_00051372-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:122541..127989 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19	1.03	0.61	0.85	0.96	0.52	5.8	6.76	4.84	4.39	3.09	5.2	2.1	1.92	1.66	1.72	1.46	2.29	0.96	0.87	1.56	1.48	0.8	1.43	3.66	4.15	1.26	0.74	1.15	0.69