XLOC_035157 (gene) - C. hemisphaerica

Overview
NameXLOC_035157
Unique NameXLOC_035157
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_262:54259..57872+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035157 ID=XLOC_035157|Name=XLOC_035157|organism=Clytia hemisphaerica|type=gene|length=3614bp|location=Sequence derived from alignment at scaffold_262:54259..57872+ (Clytia hemisphaerica)
GACTGAAGCTTTCATCGACAAACAGTTCACAGACGctctgaaaattgaag
ttctTGATGAAATAAAGACATTcgtctcaagaaaaataaaagatgaaCTT
GAGTTTCTGAAACCGTTGAATCATGAAAATTCTTCAAGACATGAACAAAG
TTACCATACTGAAGAAAAATTTATTGACCACTTGAAAAGGGAGGTAGAAT
TTTTAAGGAGGCAGCTTGAAAATCGGGATGATATCATCTACACGCTTCTA
CAAGAAAAGTCctctgtaaatcaaaacattaaaaaagacaCACAAAATGA
CGAATTTCTTTTACCGAAAAATCCTATTAAGCCTATTAACAACGCTCAAC
TTGATGGAAAAATAACACTTGATAATCAATATGATGCACTTTTCATTCAA
GAAAATGATAATGAGAATTTAATTGCTTCGGAACAAAATGATAATGTTAC
AAGGCGTAAGTCTCGCAATAGGAATAACAAAAAGAGAAACTCTGTTAACA
ATAATAATGATAACAGAAAGACTGTTGCGGTTGTTGGTGATTCAATGATC
AAATACATTAAAGGTTTCAAACTATCAAATAAATCAAACAAAGTTGTTGT
GAAAACTTTTCCTGGGGCTAAGGTGGATTGTATGAAACACTACATTAAAC
CAACATTAGATAAAAAGCCGGATGCTGTTATCATACACTAATTTTACTGA
CTATGGAGCATTTGACCATGGCATCATGTGCATAGATGTCAACATTGTCC
TGATTATCAATTTGGTGTCATACCTACATTTAAGGAGACACTTCCGCTCT
CTCAATCATCAGTCCAAAGGGATAGAAAATAGAGGAGGTTGCACGTTGCA
GGTTGCACGTTGCTTTCTattcaatttcctttgttttgcaacaaagaaaa
atcgcCTTTGAAGTGAGCTGAGTTATGCCGCCAATCGAGAAGGAAGCAAA
CATGGCGGGTCGAAGCGGTAATTTTTCTGctgttatttttgttatgtCTA
TTCGAGTTATGACTAAAACAACGTCTACAGCAAGTACTACATTGTTTAAA
ACATCTCAAATGCTTTTGGATATAtatatttcaaccaatcaaatgatTTG
TTTACGTTTTGACTAAGGATACAGTGAAATTATCATCGAAGAAAGATAGC
CTGTCTTGTTGAGTAGCTAACAGTACCTACTGATGGAATTCACTCGAAAT
CGAAAAAatggacaatttttttcaaatagggAACAATTTTCCTTGGTAGA
GGATGCCTTGAGGTATGTATATCTGAAGTTTCTAGTTTGGTCTGGCTCTT
ATCACTGTGGTCTGGCTCTTTGAGTTCAGcccatttttaaatttcatgta
CTCAAACATCGACTAGGTAGTTCTTCCAGTTCTTGTTGTCTTTAACTTTG
TTTACGTGATCAGCTAAAAGTTGGCAGTTAATTTCGAAAAGTTTGCTTCT
TGGTAATACTGAAGAAAGAGATGGAAGAAGAATTTGAATTTCGTCGCAAA
CAAACAGCTGACTGCCTTAGTAAAGTAGTGTAGATTATTATGCGGCCGGT
GCGTGATATGATAAGCCGattcatcataaaaagtaagacTGTAGAAAACT
TAAAGAGACAGCTTCTTTTAAAGATGCTTTCAATGCTTTGGGAGTTGATA
TTACTAATGATGCTGTTGATGTTCATCCTGAGAAAATAGCTGTGAAAAGT
GTAGAGTTGTTTGTACGAGTTTGAAACAGCATTGAAAGGCACCCAGAGGC
ACCCAAGCTGAAAGTAGGAAAAAAGAGAAAGCTAGGCATAAATCAACACA
GTGTGtataaaacaacaacaacatcagaCATTGATACCAGTGGTTTCGCA
GATTGTGTTGATGGagagaaaatttcagaaattaaagAGACCGTGGCTTT
GTTTAATTATTGATGCTGAAGACTTTATATTTGTTATTGATTGGTTTTTT
GAATTGGGTGAAATAAATGAGGAAATCAATGATAAGTTGGAAAGGCAATG
TGATGAGGAGGGCCAACAAGCAAGACAATCAGCCTCGCATGTTTTAGCTT
TCATAGTACGAAGTATCTACACTGgattacttttgtttttgtttttttcc
ctACTGCCATCTGCTTCAAGTGATGAGTTATTTCCTGTTGTCTGGGAGCT
GTTGAAGTGTTGgaatatttgagtttgaaagtCAGGTGTTTGGTATCTGA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAATGGTTTGTCTAT
TATTTCCAGAGGAAATACCTTAAATGATATCAATGATgatttgtttgaaa
tatttatcaCTACCAGgtgttgaaattcaaaaaaaaaagattgaaattat
ATGGTCTAATTCCTTTCCTTTTAGCTGGACAAACACTCAATCAGTTGGAA
CCATGTGGTACAACTCTGGGAGTTCAAGAATACTAAAATCCTAGGGCTTT
ATACATGATCAAATTAACAAGAGAACACATCGACTAAATATGATGAACGT
TTAAACTTGCAGCTCAGGTAACTTAGATGATTACCATATTAACTCAAAAA
AAATGCCTATATGTTATCTAATCAGGCTAGGTAAAATCTGAGAATTAGGT
TTGTCTGAAATAAAATGGCCTATTTATGACAATAAAAATCCCATGATATG
TATTCAGGTATTCAGTTGTTGTCAATGACATTGAAATGACTATAGCTACA
AGTCTGGCCTCgataattttagtttgatgactAGCTTGATATAAacagaa
attttgaataattttctgGGCTCAACATCAAAACTTCTTGAGTGGCTTTT
TCAGCTGTGAAACACAAATATTGAATGTTTGGATGGTGACAAAGACTCTa
gcttattttcattatttgtcCCGGATTCCTTTTGAAAGTTACTTCAGTCT
CAGTACTAGAGTCATGCTCTTCAGTATCAAAGGCAAGCCCAAAACTAGAG
GTACACAAAAGTTTGTCAGGATCTGCGACAAAATTGCCTAAATGGACAGT
ATCCTAACCAAGATATGGCAACAAGAAAACCAGCAAAACCTGCTCTCAGA
CAGTACACAGAAACAAAAGACAAATGttttgaggtaatttttatccTATA
TTTTTCAATGGGATTAGTTTTTGTAGGTATTGTCACTAGCTGCTAGTTCC
CTTCAAGGGTTACGTGTTACTATATCCAGATAATTCTACTCCATACAATA
TgtgaattgaaataaaatacatTGCATGATTTTAAAGgagcatttttttt
tattagagatAATGTTGACATGACTGTTCACTTGTGTGTTGTGACCAAAt
tataactttttatcattttagtgGCTGAcgaatacatttttgaaaagtgg
gAAAACAGAGGCACCTACACCTGGCTTGCAAAGGAGGAAAGAAAAAAGGA
GACTGTACCTGGCTATTCAAACTGTTGAAGGGCTGCATGCAAACTACAGG
TTTGTAATGATTTTGCATTCAAAGGTTTTTTAGTGTGAAAtagtacaatg
ttaattttaagCAATCAATGTTTCTGCGAGTGCTCCTGGCCTTGTATGTT
TTAGAggtggtttt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00055839TCONS_00055839Clytia hemisphaericatranscript
TCONS_00055840TCONS_00055840Clytia hemisphaericatranscript
TCONS_00055841TCONS_00055841Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00055839-proteinTCONS_00055839-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_262supercontigscaffold_262:54259..57872 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.62	0.52	0.46	0.38	1.67	1.55	0.35	1.35	2.05	1.98	2.52	2.82	1.68	0.77	0.96	0.64	0.92	0.6	2.59	2.28	1.04	0.2	0.59	0.94	0	0.12	1.41	0.96	1.11	1.17