TCONS_00003489-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003489-protein
Unique NameTCONS_00003489-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length100

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003489-protein ID=TCONS_00003489-protein|Name=TCONS_00003489-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MSSEKTPITGDNKLQQTQKQVDQVVDIMRQNMDKVLERDSKLSELDNRAD
ALQAGASQFETNAGKLKRKMWWQNCKMWIILIVVILVIIAIIVIWVVSTN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001940XLOC_001940Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003489TCONS_00003489Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001388Synaptobrevin
IPR016444Synaptobrevin/VAMP
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..62
NoneNo IPR availableGENE3D1.20.5.110coord: 1..98
e-value: 2.6E-36
score: 123.3
NoneNo IPR availableCDDcd15870R-SNARE_VAMP2coord: 13..74
e-value: 1.93277E-30
score: 103.619
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 10..75
IPR001388SynaptobrevinPRINTSPR00219SYNAPTOBREVNcoord: 38..57
score: 60.95
coord: 18..37
score: 61.35
coord: 74..93
score: 37.84
IPR001388SynaptobrevinPFAMPF00957Synaptobrevincoord: 11..97
e-value: 2.3E-36
score: 123.3
IPR001388SynaptobrevinPROSITEPS00417SYNAPTOBREVINcoord: 31..50
IPR001388SynaptobrevinPROSITEPS50892V_SNAREcoord: 13..73
score: 17.911
IPR016444Synaptobrevin/Vesicle-associated membrane proteinPIRSFPIRSF005409VAMP-5_synaptobrevincoord: 1..100
e-value: 3.5E-38
score: 127.9

Blast
[Close]
BLAST of TCONS_00003489-protein vs. Swiss-Prot (Human)
Match: VAMP3 (Vesicle-associated membrane protein 3 OS=Homo sapiens GN=VAMP3 PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 6.992e-39
Identity = 62/81 (76.54%), Postives = 69/81 (85.19%), Query Frame = 0 
Query:    1 MSSEKTPITGDNK-LQQTQKQVDQVVDIMRQNMDKVLERDSKLSELDNRADALQAGASQFETNAGKLKRKMWWQNCKMWII 80
            MS+  T  TG N+ LQQTQ QVD+VVDIMR N+DKVLERD KLSELD+RADALQAGASQFET+A KLKRK WW+NCKMW I
Sbjct:    1 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAI 81
The following BLAST results are available for this feature:
BLAST of TCONS_00003489-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VAMP36.992e-3976.54Vesicle-associated membrane protein 3 OS=Homo sapi... [more]
back to top