TCONS_00048386-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00048386-protein
Unique Name	TCONS_00048386-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	635

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00048386-protein ID=TCONS_00048386-protein|Name=TCONS_00048386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=635bp
MKKFVTCSEAFDGYLKELALDNFPTGNGQWRNNLRYRSDLLQSSKTKEPS
LITTESLHELNQKGPFKKDVKWSRDVKKLQSDSVEDPALIDKKNLHLYIK
HLRLVDKNISTLDYDFHKFSNLSELILSANYIEEVNAAALPSKLKVLELC
GNRLISVESLSLHGPPLQHLGLGYNLIKSVNDFVEPQSWECLLSLDLSFN
RVDNLKETSAILSTLPKLRNLLLQGNPVFLFAGYRGYVIDTIKTLSILDD
VKITADERHVFKGISTLKDLPLEEFQFNVNIDHLKGFEKQDDCGNIEEFP
RTIIKYHVEIDFISSYEVKDQEHSETTTVVSHVASHGADGEHRDSNSSHQ
KQPPQVVTSKLIQTNELPIPTPLVENETDVEISFQFAKAISSNNLSETHE
LLSKKIAIRVVENRILVKNEPKPNASPPVVEKIDATLKEPMTKKDGKSKS
KISLAKQQKDEKDKAATKGGGGGGGGGKAPKKLSDNEAHEWSRTQYTIAC
SNIELDQLLTEDCSRHEQVIKFERLPVPAAEPRVESAANNNTLNNSHNKK
SDSTKKLKNKDKDLSGRSPSRTTSVRNSSRNKMKCDTPSTTATTISETIP
PKDITLSVAVELVRWKSVKDGALHTKDVSRSVSFC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030783	XLOC_030783	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00048386	TCONS_00048386	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	L_dom-like
IPR001611	Leu-rich_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 78..588 e-value: 5.8E-20 score: 70.6
IPR032675	Leucine-rich repeat domain, L domain-like	SUPERFAMILY	52058	L domain-like	coord: 107..256
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 531..595
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 437..488
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 329..357
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 166..187 score: 6.01
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 121..141 score: 5.71
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 191..212 score: 5.902
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 143..164 score: 7.011

Blast

[Close]

BLAST of TCONS_00048386-protein vs. Swiss-Prot (Human)
Match: LRC43 (Leucine-rich repeat-containing protein 43 OS=Homo sapiens GN=LRRC43 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 2.267e-39
Identity = 121/344 (35.17%), Postives = 183/344 (53.20%), Query Frame = 0

Query:    6 TCSEAFDGYLKELALDNFPTGNGQWRNNLRY--------RSDLLQSSKTKEPSLITTESLHEL--NQKGPFKKDVKWSRDVKKLQSDSVEDPALIDKKNLHLYIKHLRLVDKNISTLDYDFHKFSNLSELILSANYIEEVNAAALPSKLKVLELCGNRLISVESLSLHGPP-LQHLGLGYN-LIKSVND-FVEPQSWECLLSLDLSFNRVDNLKETSAILSTLPKLRNLLLQGNPVFLFAGYRGYVIDTIKTLSILDDVKITADERHVFKGISTLKDLPLEEFQFNVNIDHLKGFEKQD--DCGNIEEFPRTIIKYHVEIDFISSYEVKDQEHSETTTVVSHVA 334
            T S A   +L++L L  FP G G W N  R+        R  + +      P   T E+L  L  ++  P+      + +   L+  ++ +P  I     + Y + LR++DK ++ +D D  KF  L EL+LSAN I+EV+A  LP  LKVLEL GN + S+E L  H P  LQHLGLG+N L+  +   +V    W  L+SLDL FN + +L+     L TL  LR L+LQGNP+ L   YRG  ID++  L +LDD+ ++ +E+H+F+G+S   DL  +E QF V I +++G       D     E P     Y+V  DF+     ++ E +E+  V++ + 
Sbjct:   26 TVSAAVREHLRKLCLREFPCGAGSW-NKSRFLPQTWRTWRELVPREEDVVSPGEETVEALLGLVRSRHSPWALLNNSNAEDSFLRELAIRNPLTITDTFFYSYFRSLRVIDKKVTLVDKDLLKFLKLEELVLSANRIKEVDATNLPPTLKVLELYGNEISSMECLCAHPPAGLQHLGLGHNKLLGPLESLYVTANHWPNLVSLDLGFNDLTDLQSMVTSLRTLRHLRLLVLQGNPLALVPYYRGLTIDSLAQLCVLDDITVSPNEKHLFRGLSLNGDLLAQEAQFVVTIGNIRGVLDTSVLDPEPRPEGPFITYNYYVTYDFVKD---EEGEMNESAGVLAEIV 365

The following BLAST results are available for this feature:

BLAST of TCONS_00048386-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00048386-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LRC43	2.267e-39	35.17	Leucine-rich repeat-containing protein 43 OS=Homo ...	[more]

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TCONS_00048386-protein (polypeptide) - C. hemisphaerica