TCONS_00048556-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048556-protein
Unique NameTCONS_00048556-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048556-protein ID=TCONS_00048556-protein|Name=TCONS_00048556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MPVKEETKNLPWVEKYRPKSLEDLISHKDIISTIQRFVKEDKLPHLLFYG
PPGTGKTSTILAVARQLYKPSEFNSMVLELNASDDRGIGIVREQILGFSS
TRTIFKSKFKLVILDEADAMTNDAQNALRRIMEKYTENTRFCLICNYLTG
IIPAIQSRCTRFRFGPLDMEQMSSRLKHVIQEENVECTEDGMKAVVRLAK
GDMRRSLNVLQSTHVGYKLVNEDNVYTCTGNPLRSEIQSIIDWTLNESYT
DAYKSKDDRRDQLRPPLPCSL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030871XLOC_030871Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048556TCONS_00048556Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR003959ATPase_AAA_core
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 114..134
NoneNo IPR availableGENE3D3.40.50.300coord: 2..155
e-value: 6.4E-40
score: 136.1
NoneNo IPR availableGENE3D1.10.8.60coord: 156..231
e-value: 8.7E-21
score: 73.2
NoneNo IPR availableCDDcd00009AAAcoord: 25..166
e-value: 1.05916E-25
score: 98.7575
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 42..170
e-value: 3.2E-12
score: 56.6
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 46..163
e-value: 3.1E-16
score: 59.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 9..227

Blast
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BLAST of TCONS_00048556-protein vs. Swiss-Prot (Human)
Match: RFC5 (Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 1.053e-138
Identity = 178/254 (70.08%), Postives = 217/254 (85.43%), Query Frame = 0 
Query:    2 PVKEETKNLPWVEKYRPKSLEDLISHKDIISTIQRFVKEDKLPHLLFYGPPGTGKTSTILAVARQLYKPSEFNSMVLELNASDDRGIGIVREQILGFSSTRTIFKSKFKLVILDEADAMTNDAQNALRRIMEKYTENTRFCLICNYLTGIIPAIQSRCTRFRFGPLDMEQMSSRLKHVIQEENVECTEDGMKAVVRLAKGDMRRSLNVLQSTHVGYKLVNEDNVYTCTGNPLRSEIQSIIDWTLNESYTDAYKS 255
            P   + +NLPWVEKYRP++L DLISH+DI+STIQ+F+ ED+LPHLL YGPPGTGKTSTILA A+QLYK  EF SMVLELNASDDRGI I+R  IL F+STRTIFK  FKLVILDEADAMT DAQNALRR++EK+TENTRFCLICNYL+ IIPA+QSRCTRFRFGPL  E M  RL+HV++EE V+ +EDGMKA+V L+ GDMRR+LN+LQST++ +  V E+ VYTCTG+PL+S+I +I+DW LN+ +T AY++
Sbjct:   12 PAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 265
The following BLAST results are available for this feature:
BLAST of TCONS_00048556-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFC51.053e-13870.08Replication factor C subunit 5 OS=Homo sapiens GN=... [more]
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