TCONS_00049048-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049048-protein
Unique Name	TCONS_00049048-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	431

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049048-protein ID=TCONS_00049048-protein|Name=TCONS_00049048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp
MYHQYPIMYHGCVRFLAILVITALLPSSRQSEFGIMEPMDYKSSNGSVVE
QGSGGSGGDEIDIDISDKSLQEVCQMFNFTEYLCVCPSFHPIVQQICAIE
ARRSQPDIRLRCSDEEFMPRGIIMVSITIIGIIGNILVMLVAKHRWRTST
ISQKLIGALALSDLIFSVLTFVNEVHFLWTCKWPLGKFMCKFLSSSTNMT
STMALGFILIISVERYFGIVHPFNEYVTKNKIFLMIGTNVLVSFIVVIPG
FIIMNVKGESCTEDWADPKHSLIYSWVMFLITFLFPIMAISIFYIRMLMS
LRAAQFRTKQTFDAKQQSQRKQEDTRITLILACLLISFVILVLPNRIYWI
LEDHGVWKENLTQSQQKGVRLFSFSVYLLHASINPFIYSIVDKRFRSNLM
TIFFGRNKSTEPINNTHPTVLSSTNAGLSME

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031158	XLOC_031158	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049048	TCONS_00049048	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 327..351 score: 20.32 coord: 119..143 score: 23.85 coord: 370..396 score: 25.47 coord: 197..219 score: 23.94 coord: 152..173 score: 25.93 coord: 275..298 score: 21.45
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 134..388 e-value: 3.5E-34 score: 118.2
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 203..219
None	No IPR available	GENE3D	1.20.1070.10		coord: 98..429 e-value: 5.7E-57 score: 192.5
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 81..413
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 134..388 score: 31.906

Blast

[Close]

BLAST of TCONS_00049048-protein vs. Swiss-Prot (Human)
Match: GHSR (Growth hormone secretagogue receptor type 1 OS=Homo sapiens GN=GHSR PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.940e-19
Identity = 78/285 (27.37%), Postives = 140/285 (49.12%), Query Frame = 0

Query:  125 VSITIIGIIGNILVMLVAKHRWRTSTISQKLIGALALSDLIFSVLTFVNEVHFLWTCK-WPLGKFMCK---FLSSSTNMTSTMALGFILIISVERYFGIVHPFNE--YVTKNKIFLMIGTNVLVSFIVVIPGFIIMNVKGESCTEDW----ADPKHSLIYSWVMFLITFLFPI-MAISIFYIRMLMSLRAAQFRTKQTFDA-KQQSQRKQEDTRITLILACLLISFVILVLPNRIYWILEDHGVWKENLTQSQ-QKGVRLFSFSVYLLHASINPFIYSIVDKRFR 396
            V++ ++GI GN+L MLV        T +   + ++A SDL+  +   ++ V  LW  + W  G  +CK   F+S S    + +    I  +SVERYF I  P      VTK ++ L+I     V+F    P F+++ V+ E+ T+ W      P    + S ++ ++ ++  I   + +F + +L SL   +   ++  DA    S R Q   +   +LA ++ +F++  LP  +   L        +L  +Q  +   L SF ++ L A+INP +Y+I+ K++R
Sbjct:   51 VALFVVGIAGNLLTMLVVSRFRELRTTTNLYLSSMAFSDLLIFLCMPLDLVR-LWQYRPWNFGDLLCKLFQFVSESCTYATVLT---ITALSVERYFAICFPLRAKVVVTKGRVKLVIFVIWAVAFCSAGPIFVLVGVEHENGTDPWDTNECRPTEFAVRSGLLTVMVWVSSIFFFLPVFCLTVLYSLIGRKLWRRRRGDAVVGASLRDQNHKQTVKMLAVVVFAFILCWLPFHVGRYLFSKSFEPGSLEIAQISQYCNLVSFVLFYLSAAINPILYNIMSKKYR 331

The following BLAST results are available for this feature:

BLAST of TCONS_00049048-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049048-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GHSR	3.940e-19	27.37	Growth hormone secretagogue receptor type 1 OS=Hom...	[more]

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TCONS_00049048-protein (polypeptide) - C. hemisphaerica