TCONS_00050078-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050078-protein
Unique Name	TCONS_00050078-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	988

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050078-protein ID=TCONS_00050078-protein|Name=TCONS_00050078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=988bp
KRMEKSPEKMNKDQHEVKEDLKSESKPLETINPFDCQENNADSLVKIRTK
DQKVILIDHMMLLFISDAFENIIENEEGQKFIDASEFSPENIVQAISFHL
PRFNGKLNDKCDFAGLLSICSKWSLSNYRNHIEEYLLTQHKAGIEKFNGC
LQPQHLDILHLADRFQLEKILTKLMSNLSSIGFEYSTNIKVSLEKLNREI
KYEILKTLIVGKATRESMAASVSMELDCIFNFLDLLIFEDRVLDMYAKNK
FKDFASHKEYLIYSKLRKEDFTAKQRSSDVKLVVNGDELFVNPYILSNNS
PVLKDMLVKAGKENDGDCLNLLWKSTDEIVLLLTFLTKSMELNGDCDLYT
LASLCEEYKIEWLMSKIEKFVQYLDISKLSAKETLLYLKLSSIFGFTKAE
QRLVNKIDDKFPRLQVHQEFTWLNTRAKVLLARKRLWNLLKNFQERSYLL
NKSNVGLLSVLQTYEQTEFEFNDEDSNVSKFSLSMRHISGGALSGAGAQL
FGAPAEEPKSPGYFNNEEDDDILVEAIVQVSKLDSLVTGKENEETIFENR
SKLYRFDSENKQWKERGLGVLKITRTKGQNSCRVLMRRDQVHKLCANHAV
VSTMEFKPLSEKSYKHWTLFTQADFSEEEQKPEYFCAIFKTSEIAKEFKE
KFDECIQIVGGKSATASTPVQKATTPNATKVTPEVSKSPSFSFQTSGPSN
AFSNMNGFSFTSLNGNQATSASAPAFSLGHKATEKAKPTTQAPTSNIFSK
FAAQKGAWECETCLVENEEEVPQCLSCETANPNTPKTDTKPVSATASSGF
SFGNSGSNQQLSSGFSFGGTNTATNQQSAGFPFGNTSTSSQPASGFSFGA
KTNDSQSSGFSFGGGASKADPEHSSGFSFGKVSSTTENTEQKPSFSFAKT
SDNPFSQFTPGEGSWECDACLIENTKEVTECESCETPKPTTTPKKTPKPF
PTQQPKASDLVFWKCQNCFFKFNREDSVKCICCWVVKI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031710	XLOC_031710	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050078	TCONS_00050078	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001876	Znf_RanBP2
IPR000156	Ran_bind_dom
IPR011993	PH_dom-like
IPR000210	BTB/POZ_dom
IPR011333	SKP1/BTB/POZ

Vocabulary: **Biological Process**
Term	Definition
GO:0046907	intracellular transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 961..986 e-value: 11.0 score: 3.6 coord: 913..937 e-value: 6.4E-5 score: 32.4 coord: 756..780 e-value: 0.0032 score: 26.7
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 912..939 e-value: 1.2E-6 score: 27.6 coord: 755..782 e-value: 7.7E-5 score: 21.8
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 915..934
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 758..777
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 754..783 score: 9.665
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 911..940 score: 10.252
IPR001876	Zinc finger, RanBP2-type	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 755..782
IPR001876	Zinc finger, RanBP2-type	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 912..939
IPR000156	Ran binding domain	SMART	SM00160	ranbd_3	coord: 524..655 e-value: 5.7E-39 score: 145.5
IPR000156	Ran binding domain	PFAM	PF00638	Ran_BP1	coord: 536..656 e-value: 2.6E-37 score: 127.7
IPR000156	Ran binding domain	PROSITE	PS50196	RANBD1	coord: 523..661 score: 31.585
None	No IPR available	GENE3D	3.30.710.10		coord: 263..373 e-value: 7.7E-8 score: 31.8
None	No IPR available	GENE3D	3.30.710.10		coord: 25..180 e-value: 0.4 score: 10.1
None	No IPR available	GENE3D	4.10.1060.10		coord: 748..822 e-value: 1.6E-7 score: 30.1 coord: 904..952 e-value: 2.6E-9 score: 35.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 779..804
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 933..952
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 826..903
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 668..692
IPR011993	PH domain-like	GENE3D	2.30.29.30		coord: 531..667 e-value: 3.8E-34 score: 117.0
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 529..657
IPR000210	BTB/POZ domain	PROSITE	PS50097	BTB	coord: 278..336 score: 9.351
IPR011333	SKP1/BTB/POZ domain	SUPERFAMILY	54695	POZ domain	coord: 272..370

Blast

[Close]

BLAST of TCONS_00050078-protein vs. Swiss-Prot (Human)
Match: RBP2 (E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 1.042e-37
Identity = 151/532 (28.38%), Postives = 226/532 (42.48%), Query Frame = 0

Query:  525 EAIVQVSKLDSLVTGKENEETIFENRSKLYRFDSENKQWKERGLGVLKITRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEFKP--LSEKSYKHWTLFTQADFSEEEQKPEYFCAIFKTSEIAKEFKEKFDECIQIV---GGKSATASTPVQKATTPNATKVTPEVSKSPS----FSFQTSGPSNAFSNMNGFSFTSLNGNQATSASAPAFSLGHKATEKAKP-------TTQAPTSNIFSKFA----AQKGAWECETCLVENEEEVPQCLSCETANPNTPKTDTKPVSATASSGFSFGNSGSNQQLSSGFSF------------------GGTNT----ATNQQSAGFPFGNTSTSSQPASGFSFG-AKTNDSQSSGFSFGGGASKADPEHSSGFSFGKVSSTTENTEQKP-------------SFSF--AKTSDNPFS----QFTPGEGSWECDACLIENTKEVTECESCETP-KPTTTPKKTPKPFPTQQPKASDLVF----------WKCQNCFFKFNREDSVKCICC 983
            E +V +     + TG+E+EE  F NR+KL+RFD E+K+WKERG+G +KI R K     R+LMRR+QV K+CANH +   M+  P   S++S+    ++   D+++E  KPE     FKT E A  FK KF+E   I+   G   A AS    +      +    ++ KS +    F FQ +    ++ + N     SL             +L     E   P       T +    N+  +FA     ++G W+C  CLV NE  V +C++C+    NT   +    S    + F FG     + ++S F                     G++T      N +    P  +  T   PAS F FG ++T+ +  SGF       +   + SS     + ++T     Q P             SF F  ++TS  P S     FT  EG W+C  CL+ N    T+C +C+ P K   T      P  ++  KA    F          W C  C  + N   + KCI C
Sbjct: 1173 EPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSF----VWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQSILKAPGTNVAMASNQAVRIVKEPTSHDNKDICKSDAGNLNFEFQVAKKEGSWWHCNS---CSLKNASTAKKCVSCQNLNPSNKELVGPPLAETVFTPKTSPENVQDRFALVTPKKEGHWDCSICLVRNEPTVSRCIACQ----NTKSANKSGSSFVHQASFKFGQGDLPKPINSDFRSVFSTKEGQWDCSACLVQNEGSSTKCAACQNPRKQSLPATSIPT---PAS-FKFGTSETSKTLKSGFEDMFAKKEGQWDCSSCLVRNEANATRCVACQNPDKPSPSTSVPAPASFKFGTSETSKAPKSGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQNPGKQNQTTSAVSTPASSETSKAPKSGFEGMFTKKEGQWDCSVCLVR-NEASATKCIAC 1688

HSP 2 Score: 145.206 bits (365), Expect = 5.765e-35
Identity = 84/202 (41.58%), Postives = 121/202 (59.90%), Query Frame = 0

Query:  469 FEFNDEDSNVSKFSLSMRHISGGALSGAGAQLF----GAPAEEPKSPGYFNNEED-------DDILVEAIVQVSKLDSLVTGKENEETIFENRSKLYRFDSENKQWKERGLGVLKITRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEFKPLSEKSYKHWTLFTQADFSEEEQKPEYFCAIFKTSEIAKEFKEKFDECIQIV 659
            F+F  +D N   FS            GAG +LF    G  A +  + G F  ++D       DDI  E +VQ+ +   LVTG+E+E+ ++  R KL+RFD+E  QWKERGLG LKI + +     R+LMRR+QV K+CANH + +TM  KPLS  S + W ++  +DFS+ + K E   A FKT E+A+EFK+KF+EC +++
Sbjct: 1959 FQFGKKDPNFKGFS------------GAGEKLFSSQYGKMANKANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLS-GSDRAW-MWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLL 2146

HSP 3 Score: 126.716 bits (317), Expect = 2.924e-29
Identity = 69/170 (40.59%), Postives = 105/170 (61.76%), Query Frame = 0

Query:  497 GAQLFGAPAEEPKSPGYFNNEED---------DDILVEAIVQVSKLDSLVTGKENEETIFENRSKLYRFDSENKQWKERGLGVLKITRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEFKPLSEKSYKHWTLFTQADFSEEEQKPEYFCAIFKTSEIAKEFKEKFDECIQ 657
            GA +FG  +   +S G    +ED         +DI  E IV + +++ + +G+E+EE +F+ R+KLYR+D +  QWKERG+G +KI     +N  R+LMRRDQV K+CANH +  TME KPL+  +  +  ++T +D+++ E K E     FKT E+A  FK+ F+EC Q
Sbjct: 2876 GAAVFGTQSVGTQSAGKVGEDEDGSDEEVVHNEDIHFEPIVSLPEVE-VKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHTMKNYYRILMRRDQVFKVCANHVITKTMELKPLNVSN--NALVWTASDYADGEAKVEQLAVRFKTKEVADCFKKTFEECQQ 3042

HSP 4 Score: 117.472 bits (293), Expect = 1.983e-26
Identity = 77/234 (32.91%), Postives = 121/234 (51.71%), Query Frame = 0

Query:  517 EEDDDILVEAIVQVSKLDSLVTGKENEETIFENRSKLYRFDSENKQWKERGLGVLKITRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEFKPLSEKSYKHWTLFTQADFSEEEQKPEYFCAIFKTSEIAKEFKEKFDECI------QIVGGKSATASTPVQKATTPNATKVTPEVSKSPSFSFQTSGPSNAFSNMNGFSFTSLNGNQATSASAPAFSLGHK------ATEKAKP 738
            EE D    E +V +  L  + +G+ENE+ +F +R+KLYR+D +  QWKERG+G +KI +       R++MRRDQV KLCANH +   M  + +  K  +   L+T  DF++ E+K E+    FK  ++A  FK+ FDE         ++    + +STP +      A  V  E ++  +   Q    ++A S +   S TS    +A   S P F  G +      ++EK+KP
Sbjct: 2303 EERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNM--KGTERVWLWTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADATSEVE-VSSTSETTPKAV-VSPPKFVFGSESVKSIFSSEKSKP 2532

The following BLAST results are available for this feature:

BLAST of TCONS_00050078-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050078-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RBP2	1.042e-37	28.38	E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=R...	[more]

You are here

TCONS_00050078-protein (polypeptide) - C. hemisphaerica