TCONS_00050300-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050300-protein
Unique Name	TCONS_00050300-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1493

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050300-protein ID=TCONS_00050300-protein|Name=TCONS_00050300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1493bp
MAVSMEEAKADYLAAKQAIGNKETKIIFVRKCKFEGKHDKPDNKILAITS
YRVYVISKKSSQAKVDFSFHLLDLITLDGSKPLTLSAQVNAGDKQFQYTF
SFVSQDDVDRCISYVKALLKKNLLDANVDKQLSIKVESEEKQQLIRNQTN
VIVQSFASSEEQCGGLAQAYLFLADYYNQLPIAEIVWDINKIYGSHSSKD
FKLEDFDHLEQRELVPLVAALGYNAWFEKLIVKNTKLTNELADTIIKVVK
RTSSIEEVIIVNCHLNKEHAHRLSQAITTNPNKVLKRIDLSRNNIEEKGV
SGFAGAFSLLSYGFEEINFSHSGITPKGASLLINSLKNNKNMSSTLTKLS
LSGNQLKADAAQPLCDFLAQPNALETLELSNSECALELMFGALMRGCQQN
LKVLDLSGNPFSYKKSKETQSLPTVQQFFSSCASLNTLSLSNTKLPSESV
KAMMVGLMSNPLLTDFELDLSHNELKSVTAQEVASVIGQIRCLRKLNLSN
NALDNDLVTICEAVEKSTSIKELDFSSTITKSKHINAISESLADMAMTDT
LPLEKLFIADNKLKLGASALFDCLGTNESIRTIDISGNGIGDIGARLLAK
ALQINTNLREVLLDRNNISYKGLQDISYAMHRNFTLQSLPLPINDFSQAL
KHNADLYMKYYKKIEEKLIKNQSSTDSSQEQAYKIHQGFLLSTSDSYTQS
TDALVVELQDLVSKNKTNATERVQSQIKRAKSLISETDTFRLVLAELFSD
PAAATLSLNDKISNVADDVATSVEDVIKESVDSMLSSAKKICPTVFTNEE
QLISVKGELSKDGLVDRSSISNIIVRLGKGDIVSKLCKSNLTTAVEVAEH
LKKILVEALQNAISSLKVALETPVTPVTTETPAPKSEETNEEETPQKEEE
EEKKESEKAAETTGEKEPEKPADLEKQTDSLEVTITSSEAELPPTSPLAS
PAVHVEKTTDLLGEIMGNKESFDMPWDVAAGNRLSMQISVSSDKTDDDED
FSLAVLKARDRLSTLQAKDFDRKKKKKSSLKRRPTFYRQEDKTPTATDEI
EVDIGIGGVDSGRSSSMSSTQTPSTPKSPPPPSVEDDDEEPVVIELDEID
SKAEPSVATTPAQSSVAVEDFDALSTNAAPLQVNKGRAKPMAGRRAPSRV
SKLAHMNVENTEKFIEEQSKAAPPPASTKPSPKQRPVSEMPTVALSPPET
DKPPRRSTSEKIKNALKPDPKPPKPAPSGSTPTSGDSKKEKKGKSPIGGI
KLPSLSLSSLKRNRASSKGTDIKKETDVKKEMEEQPSKAEEKVNSKPSSA
PEVAAPVEELKAPEPAQKPPSPAPKPSEETPSDAPLSPPAKEEEPEAKPT
PAPSPKPEATKRPMVPKAGLPMMGGAALMAEMKKRQNKDKPEQPAPPPAA
KPKPPPAAQKPGIGSRAGSVSGPKPSPPKRPVSLKPTEGKSDVPDEKPKP
AIRPRLNTTPKPSTPKPSAEPTEEKKTEESTTEAKDEDSEVKE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031851	XLOC_031851	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050300	TCONS_00050300	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001611	Leu-rich_rpt
IPR032675	L_dom-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 896..916
None	No IPR available	SMART	SM00368	LRR_RI_2	coord: 432..459 e-value: 250.0 score: 0.2 coord: 460..489 e-value: 64.0 score: 4.4 coord: 490..516 e-value: 83.0 score: 3.6 coord: 282..309 e-value: 27.0 score: 7.1 coord: 311..338 e-value: 120.0 score: 2.5 coord: 577..604 e-value: 3.6E-4 score: 29.8 coord: 343..370 e-value: 0.018 score: 24.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 873..927
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1016..1493
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 561..650 coord: 221..527
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 343..365 e-value: 0.11 score: 12.5 coord: 282..304 e-value: 1.5 score: 8.9 coord: 577..599 e-value: 0.0086 score: 16.0
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 185..343 e-value: 5.2E-14 score: 50.7 coord: 344..688 e-value: 2.2E-47 score: 160.7

Blast

[Close]

BLAST of TCONS_00050300-protein vs. Swiss-Prot (Human)
Match: CARL1 (F-actin-uncapping protein LRRC16A OS=Homo sapiens GN=CARMIL1 PE=1 SV=1)

HSP 1 Score: 496.893 bits (1278), Expect = 1.967e-151
Identity = 286/841 (34.01%), Postives = 490/841 (58.26%), Query Frame = 0

Query:   39 DKPDNKILAITSYRVYVISKKSSQAKVDFSFHLLDLITLDGSKPLTLSAQVNAGDKQFQYTFSFVSQDDVDRCISYVKALLKKNLLDANVDKQLSIKVESEEKQQLIRNQTNVIVQSFASSEEQCGGLAQAYLFLADYYNQLPIAEIVWDINKIYGSHSSKDFKLEDFDHLEQRELVPLVAALGYNAWFEKLIVKNTKLTNELADTIIKVVKRTSSIEEVIIVNCHLNKEHAHRLSQAITTNPNKVLKRIDLSRNNIEEKGVSGFAGAFSLLSYGFEEINFSHSGITPKGASLLINSLKNNKNMSSTLTKLSLSGNQLKADAAQPLCDFLAQPNALETLELSNSECALELMFGALMRGCQQNLKVLDLSGNPFSYKKSKETQSLPTVQQFFSSCASLNTLSLSNTKLPSESVKAMMVGLMSNPLLTDFELDLSHNELKSVTAQEVASVIGQIRCLRKLNLSNNALDNDLVTICEAVEKSTSIKELDFSSTIT--KSKHINAISESLADMAMTDTLPLEKLFIADNKLKLGASALFDCLGTNESIRTIDISGNGIGDIGARLLAKALQINTNLREVLLDRNNISYKGLQDISYAMHRNFTLQSLPLPINDFSQALKHNADLYMKYYKKIEEKLIKNQSSTDSSQEQAYKIHQGFLLSTSDSYTQSTDALVVELQDLVSKNKTNATERVQSQIKRAKSLISETDTFRLVLAELFSDPAAATLS--------LNDKISNVADDVATSVEDVIKESVDSMLSSAKKICPTVFTN---EEQLISVKGELSKDGLVDRSSISNIIVRLGKGDIVSKLCKSNLTTAVEVAEHLKKILVEALQNAISSL 866
            DK +NK+L +TS R ++++ +    K++ +F  L++  +  SK    SAQ+    ++   +    S +DV   ++++   L+K +       ++  KV  E  ++L   Q     Q+ A  +  CGG +Q Y  + D+       E+ WD++ IY +  +++  L+DF HL+ R+L+P++AAL YN WF KL  K+ KL+ ++ + I++VV R++ +EE+++ N  L  + A +L+ A+  NPN  L  I+L+ N +E++GVS  +  F+ L  G + +N S + ++PKG + L  SL  N   +STL  L LSGN L+ D    + +FLAQPNA+  L+LSN+EC+L+++ GAL+RGC Q L VL+LS   FS++K KE    P+ +QFFSS  +L  ++LS TKL  E +KA+++GL  N  L    LDLS+ EL+S  AQ +   I +I  +  L++S+N L++DL T+   + K+ SI+ L         KSK++  + ++L  M   +  PL+ L +AD+KLK   + + + LG+N S+  +DISGNG+GD+GA++LAKALQINT LR V+ D+NNI+ +G QDI+ AM +N+TL+ +P+P+ D SQALK N +      +KIE  L++N  +    QEQAY++ QG + ST+    Q  D + V++QD ++  +    + +Q  +K A+ L+ +    + +L  L+    A+           + + + ++A +V   V++ +K  ++SM+ +A+ +CP V       + LI    E      + R+ + N+++     DI++K+ +  LT A  +++ +   +++AL +    L
Sbjct:   39 DKVENKVLVLTSCRAFLVTARIP-TKLELTFSYLEIHGVVCSK----SAQMIVETEKCSISMKMASPEDVSEVLAHIGTCLRK-IFPGLSPVRIMKKVSMEPSERLASLQALWDSQTVAE-QGPCGGFSQMYACVCDWLGFSYREEVQWDVDTIYLTQDTRELNLQDFSHLDHRDLIPIIAALEYNQWFTKLSSKDLKLSTDVCEQILRVVSRSNRLEELVLENAGLRTDFAQKLASALAHNPNSGLHTINLAGNPLEDRGVSSLSIQFAKLPKGLKHLNLSKTSLSPKGVNSLSQSLSANPLTASTLVHLDLSGNVLRGDDLSHMYNFLAQPNAIVHLDLSNTECSLDMVCGALLRGCLQYLAVLNLSRTVFSHRKGKEVP--PSFKQFFSSSLALMHINLSGTKLSPEPLKALLLGLACNHNLKGVSLDLSNCELRSGGAQVLEGCIAEIHNITSLDISDNGLESDLSTLIVWLSKNRSIQHLALGKNFNNMKSKNLTPVLDNLVQMIQDEESPLQSLSLADSKLKTEVTIIINALGSNTSLTKVDISGNGMGDMGAKMLAKALQINTKLRTVIWDKNNITAQGFQDIAVAMEKNYTLRFMPIPMYDASQALKTNPEKTEDALQKIENYLLRNHETRKYLQEQAYRLQQGIVTSTTQ---QMIDRICVKVQDHLNSLRNCGGDAIQEDLKSAERLMRDAKNSKTLLPNLYHVGGASWAGASGLLSSPIQETLESMAGEVTRVVDEQLKALLESMVDAAENLCPNVMKKAHIRQDLIHASTEKIS---IPRTFVKNVLLEQSGIDILNKISEVKLTVASFLSDRIVDEILDALSHCHHKL 864

The following BLAST results are available for this feature:

BLAST of TCONS_00050300-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050300-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CARL1	1.967e-151	34.01	F-actin-uncapping protein LRRC16A OS=Homo sapiens ...	[more]

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TCONS_00050300-protein (polypeptide) - C. hemisphaerica