TCONS_00050300-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050300-protein
Unique NameTCONS_00050300-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1493

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050300-protein ID=TCONS_00050300-protein|Name=TCONS_00050300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1493bp
MAVSMEEAKADYLAAKQAIGNKETKIIFVRKCKFEGKHDKPDNKILAITS
YRVYVISKKSSQAKVDFSFHLLDLITLDGSKPLTLSAQVNAGDKQFQYTF
SFVSQDDVDRCISYVKALLKKNLLDANVDKQLSIKVESEEKQQLIRNQTN
VIVQSFASSEEQCGGLAQAYLFLADYYNQLPIAEIVWDINKIYGSHSSKD
FKLEDFDHLEQRELVPLVAALGYNAWFEKLIVKNTKLTNELADTIIKVVK
RTSSIEEVIIVNCHLNKEHAHRLSQAITTNPNKVLKRIDLSRNNIEEKGV
SGFAGAFSLLSYGFEEINFSHSGITPKGASLLINSLKNNKNMSSTLTKLS
LSGNQLKADAAQPLCDFLAQPNALETLELSNSECALELMFGALMRGCQQN
LKVLDLSGNPFSYKKSKETQSLPTVQQFFSSCASLNTLSLSNTKLPSESV
KAMMVGLMSNPLLTDFELDLSHNELKSVTAQEVASVIGQIRCLRKLNLSN
NALDNDLVTICEAVEKSTSIKELDFSSTITKSKHINAISESLADMAMTDT
LPLEKLFIADNKLKLGASALFDCLGTNESIRTIDISGNGIGDIGARLLAK
ALQINTNLREVLLDRNNISYKGLQDISYAMHRNFTLQSLPLPINDFSQAL
KHNADLYMKYYKKIEEKLIKNQSSTDSSQEQAYKIHQGFLLSTSDSYTQS
TDALVVELQDLVSKNKTNATERVQSQIKRAKSLISETDTFRLVLAELFSD
PAAATLSLNDKISNVADDVATSVEDVIKESVDSMLSSAKKICPTVFTNEE
QLISVKGELSKDGLVDRSSISNIIVRLGKGDIVSKLCKSNLTTAVEVAEH
LKKILVEALQNAISSLKVALETPVTPVTTETPAPKSEETNEEETPQKEEE
EEKKESEKAAETTGEKEPEKPADLEKQTDSLEVTITSSEAELPPTSPLAS
PAVHVEKTTDLLGEIMGNKESFDMPWDVAAGNRLSMQISVSSDKTDDDED
FSLAVLKARDRLSTLQAKDFDRKKKKKSSLKRRPTFYRQEDKTPTATDEI
EVDIGIGGVDSGRSSSMSSTQTPSTPKSPPPPSVEDDDEEPVVIELDEID
SKAEPSVATTPAQSSVAVEDFDALSTNAAPLQVNKGRAKPMAGRRAPSRV
SKLAHMNVENTEKFIEEQSKAAPPPASTKPSPKQRPVSEMPTVALSPPET
DKPPRRSTSEKIKNALKPDPKPPKPAPSGSTPTSGDSKKEKKGKSPIGGI
KLPSLSLSSLKRNRASSKGTDIKKETDVKKEMEEQPSKAEEKVNSKPSSA
PEVAAPVEELKAPEPAQKPPSPAPKPSEETPSDAPLSPPAKEEEPEAKPT
PAPSPKPEATKRPMVPKAGLPMMGGAALMAEMKKRQNKDKPEQPAPPPAA
KPKPPPAAQKPGIGSRAGSVSGPKPSPPKRPVSLKPTEGKSDVPDEKPKP
AIRPRLNTTPKPSTPKPSAEPTEEKKTEESTTEAKDEDSEVKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031851XLOC_031851Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050300TCONS_00050300Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 896..916
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 432..459
e-value: 250.0
score: 0.2
coord: 460..489
e-value: 64.0
score: 4.4
coord: 490..516
e-value: 83.0
score: 3.6
coord: 282..309
e-value: 27.0
score: 7.1
coord: 311..338
e-value: 120.0
score: 2.5
coord: 577..604
e-value: 3.6E-4
score: 29.8
coord: 343..370
e-value: 0.018
score: 24.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 873..927
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1016..1493
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 561..650
coord: 221..527
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 343..365
e-value: 0.11
score: 12.5
coord: 282..304
e-value: 1.5
score: 8.9
coord: 577..599
e-value: 0.0086
score: 16.0
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 185..343
e-value: 5.2E-14
score: 50.7
coord: 344..688
e-value: 2.2E-47
score: 160.7

Blast
BLAST of TCONS_00050300-protein vs. Swiss-Prot (Human)
Match: CARL1 (F-actin-uncapping protein LRRC16A OS=Homo sapiens GN=CARMIL1 PE=1 SV=1)

HSP 1 Score: 496.893 bits (1278), Expect = 1.967e-151
Identity = 286/841 (34.01%), Postives = 490/841 (58.26%), Query Frame = 0
Query:   39 DKPDNKILAITSYRVYVISKKSSQAKVDFSFHLLDLITLDGSKPLTLSAQVNAGDKQFQYTFSFVSQDDVDRCISYVKALLKKNLLDANVDKQLSIKVESEEKQQLIRNQTNVIVQSFASSEEQCGGLAQAYLFLADYYNQLPIAEIVWDINKIYGSHSSKDFKLEDFDHLEQRELVPLVAALGYNAWFEKLIVKNTKLTNELADTIIKVVKRTSSIEEVIIVNCHLNKEHAHRLSQAITTNPNKVLKRIDLSRNNIEEKGVSGFAGAFSLLSYGFEEINFSHSGITPKGASLLINSLKNNKNMSSTLTKLSLSGNQLKADAAQPLCDFLAQPNALETLELSNSECALELMFGALMRGCQQNLKVLDLSGNPFSYKKSKETQSLPTVQQFFSSCASLNTLSLSNTKLPSESVKAMMVGLMSNPLLTDFELDLSHNELKSVTAQEVASVIGQIRCLRKLNLSNNALDNDLVTICEAVEKSTSIKELDFSSTIT--KSKHINAISESLADMAMTDTLPLEKLFIADNKLKLGASALFDCLGTNESIRTIDISGNGIGDIGARLLAKALQINTNLREVLLDRNNISYKGLQDISYAMHRNFTLQSLPLPINDFSQALKHNADLYMKYYKKIEEKLIKNQSSTDSSQEQAYKIHQGFLLSTSDSYTQSTDALVVELQDLVSKNKTNATERVQSQIKRAKSLISETDTFRLVLAELFSDPAAATLS--------LNDKISNVADDVATSVEDVIKESVDSMLSSAKKICPTVFTN---EEQLISVKGELSKDGLVDRSSISNIIVRLGKGDIVSKLCKSNLTTAVEVAEHLKKILVEALQNAISSL 866
            DK +NK+L +TS R ++++ +    K++ +F  L++  +  SK    SAQ+    ++   +    S +DV   ++++   L+K +       ++  KV  E  ++L   Q     Q+ A  +  CGG +Q Y  + D+       E+ WD++ IY +  +++  L+DF HL+ R+L+P++AAL YN WF KL  K+ KL+ ++ + I++VV R++ +EE+++ N  L  + A +L+ A+  NPN  L  I+L+ N +E++GVS  +  F+ L  G + +N S + ++PKG + L  SL  N   +STL  L LSGN L+ D    + +FLAQPNA+  L+LSN+EC+L+++ GAL+RGC Q L VL+LS   FS++K KE    P+ +QFFSS  +L  ++LS TKL  E +KA+++GL  N  L    LDLS+ EL+S  AQ +   I +I  +  L++S+N L++DL T+   + K+ SI+ L         KSK++  + ++L  M   +  PL+ L +AD+KLK   + + + LG+N S+  +DISGNG+GD+GA++LAKALQINT LR V+ D+NNI+ +G QDI+ AM +N+TL+ +P+P+ D SQALK N +      +KIE  L++N  +    QEQAY++ QG + ST+    Q  D + V++QD ++  +    + +Q  +K A+ L+ +    + +L  L+    A+           + + + ++A +V   V++ +K  ++SM+ +A+ +CP V       + LI    E      + R+ + N+++     DI++K+ +  LT A  +++ +   +++AL +    L
Sbjct:   39 DKVENKVLVLTSCRAFLVTARIP-TKLELTFSYLEIHGVVCSK----SAQMIVETEKCSISMKMASPEDVSEVLAHIGTCLRK-IFPGLSPVRIMKKVSMEPSERLASLQALWDSQTVAE-QGPCGGFSQMYACVCDWLGFSYREEVQWDVDTIYLTQDTRELNLQDFSHLDHRDLIPIIAALEYNQWFTKLSSKDLKLSTDVCEQILRVVSRSNRLEELVLENAGLRTDFAQKLASALAHNPNSGLHTINLAGNPLEDRGVSSLSIQFAKLPKGLKHLNLSKTSLSPKGVNSLSQSLSANPLTASTLVHLDLSGNVLRGDDLSHMYNFLAQPNAIVHLDLSNTECSLDMVCGALLRGCLQYLAVLNLSRTVFSHRKGKEVP--PSFKQFFSSSLALMHINLSGTKLSPEPLKALLLGLACNHNLKGVSLDLSNCELRSGGAQVLEGCIAEIHNITSLDISDNGLESDLSTLIVWLSKNRSIQHLALGKNFNNMKSKNLTPVLDNLVQMIQDEESPLQSLSLADSKLKTEVTIIINALGSNTSLTKVDISGNGMGDMGAKMLAKALQINTKLRTVIWDKNNITAQGFQDIAVAMEKNYTLRFMPIPMYDASQALKTNPEKTEDALQKIENYLLRNHETRKYLQEQAYRLQQGIVTSTTQ---QMIDRICVKVQDHLNSLRNCGGDAIQEDLKSAERLMRDAKNSKTLLPNLYHVGGASWAGASGLLSSPIQETLESMAGEVTRVVDEQLKALLESMVDAAENLCPNVMKKAHIRQDLIHASTEKIS---IPRTFVKNVLLEQSGIDILNKISEVKLTVASFLSDRIVDEILDALSHCHHKL 864          
The following BLAST results are available for this feature:
BLAST of TCONS_00050300-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CARL11.967e-15134.01F-actin-uncapping protein LRRC16A OS=Homo sapiens ... [more]
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