TCONS_00050522-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050522-protein
Unique NameTCONS_00050522-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050522-protein ID=TCONS_00050522-protein|Name=TCONS_00050522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
CGTANCQIDGGWSSWSWGACDAPCGPGTQIEERSCTNPSVSNGGLSCCGS
ATGNTQSCEVVPCPVNGGWTAWGTWGACSDPCGTGSQERSRTCTNPTPAH
GGDPCAGDTSESQDCNTNPCPVNGGWTAWGTWGACTATCGTGSQERSRTC
TNPTPAHGGDPCAGDTSESQDCNTDPCPVNGGWTAWGTWGACTATCGTGS
QERSRTCTNPTPAHGGDPCAGDTSEPQDCNTNPCPIHGVWTSWGSWETCS
LTCGTGSQNRTRTCTDPAPQHGGDNCAGDASEPQDCNTNPCPVNGNWGQW
SNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCNGTHTNETQMCNFNYCP
DMCNQYFKMCGCEDIPVIYDMTLLTTNATYYGIDETDVNVTLNSLGTWDS
EAIKLLCKNSQCSDTSLQSAINDIQAEIDRIQISLDTVSLSKKLIRKMID
CKANVWGRRGELYDHYEALCKRKVIVRQVHEDLKIKKNILEKEKKRCADR
SWLRQVLENSWSKM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031996XLOC_031996Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050522TCONS_00050522Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 480..500
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 67..80
score: 45.22
coord: 85..96
score: 45.98
coord: 104..115
score: 35.64
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 126..178
e-value: 2.1E-15
score: 67.2
coord: 183..235
e-value: 2.2E-14
score: 63.8
coord: 69..121
e-value: 7.5E-14
score: 62.0
coord: 297..350
e-value: 4.2E-14
score: 62.9
coord: 240..292
e-value: 6.2E-14
score: 62.3
coord: 12..64
e-value: 7.5E-6
score: 35.4
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 293..350
e-value: 8.4E-16
score: 57.7
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 179..234
e-value: 3.7E-16
score: 58.7
coord: 65..120
e-value: 1.8E-16
score: 59.7
coord: 122..177
e-value: 7.4E-17
score: 60.9
coord: 236..291
e-value: 2.2E-16
score: 59.4
coord: 8..63
e-value: 1.8E-8
score: 34.1
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 71..120
e-value: 1.9E-11
score: 43.9
coord: 15..63
e-value: 3.7E-4
score: 20.6
coord: 185..234
e-value: 1.0E-11
score: 44.8
coord: 128..177
e-value: 1.5E-12
score: 47.4
coord: 242..291
e-value: 6.3E-11
score: 42.2
coord: 299..349
e-value: 1.5E-11
score: 44.2
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 123..178
score: 14.147
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 180..235
score: 13.415
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 294..350
score: 12.782
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 66..121
score: 13.869
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 237..292
score: 13.263
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 9..64
score: 10.948
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 176..234
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 233..291
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 62..120
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 290..349
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 6..63
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 119..177

Blast
[Close]
BLAST of TCONS_00050522-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 2.262e-101
Identity = 159/346 (45.95%), Postives = 208/346 (60.12%), Query Frame = 0 
Query:    6 CQIDGGWSSWS-WGACDAPCGPGTQIEERSCTNPSVSNGGLSCCGSATGNTQSCEVVPCPVNGGWTAWGTWGACSDPCGTGSQERSRTCTNPTPAHGGDPCAGDTSESQDCNTNPCPVNGGWTAWGTWGACTATCGTGSQERSRTCTNPTPAHGGDPCAGDTSESQDCNTDPCPVNGGWTAWGTWGACTATCGTGSQERSRTCTNPTPAHGGDPCAGDTSEPQDCNTNPCPIHGVWTSWGSWETCSLTCGTGSQNRTRTCTDPAPQHGGDNCAGDASEPQDCNTNPCPVNGNWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCNGTHTNETQMCNFNYCP 350
             Q+ GG+S WS W AC   CG G Q   R C  P  +NGG  C GS     ++C+  PCPV+G W+ W  W  C+  CG G+Q R+RTC NP+  HGG PC G+  E   CN  PCPV+G W+AW  WG C+ +CG G+Q R+R C NP PA GG  C G  ++ Q CN   CP++G W  W +W AC+ +CG G+++R+R C++P P +GG  C G   +   CN++PCP HG W+ W  W TCS TC  G   R RTC +P P +GG  C G  S+ Q CNT+ CPV+G+WG W +W++C   CG G + R R+CD P P  GG  C G  T  T+ CN   CP
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDL-EMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTR-CNVQACP 4869

HSP 2 Score: 285.804 bits (730), Expect = 1.995e-84
Identity = 142/326 (43.56%), Postives = 184/326 (56.44%), Query Frame = 0 
Query:    1 CGTANCQIDGGWSSWS-WGACDAPCGPGTQIEERSCTNPSVSNGGLSCCGSATGNTQSCEVVPCPVNGGWTAWGTWGACSDPCGTGSQERSRTCTNPTPAHGGDPCAGDTSESQDCNTNPCPVNGGWTAWGTWGACTATCGTGSQERSRTCTNPTPAHGGDPCAGDTSESQDCNTDPCPVNGGWTAWGTWGACTATCGTGSQERSRTCTNPTPAHGGDPCAGDTSEPQDCNTNPCPIHGVWTSWGSWETCSLTCGTGSQNRTRTCTDPAPQHGGDNCAGDASEPQDCNTNPCPVNGNWGQWSNWTEC-DKPCGVGFQNRSRVCDDP 324
            C    C +DG WS WS W  C   CG G Q   R+C NPSV +GG  C G+A      C + PCPV+G W+AW  WG CS+ CG G+Q R+R C NP PA GG  C G  ++ Q CN   CP++G W  W +W AC+ +CG G+++R+R C++P P +GG  C G   +S  CN+DPCP +G W+ W  WG C+ TC  G   R RTC NP P++GG  C G  S+ Q CNT+ CP+ G W SW SW  CS +CG G + R R C  P P  GG  C GD ++   CN   CP      + S      D   G+ F N + + D P
Sbjct: 4578 CQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAV-EIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPGGPQRARGSVIGNINDVEFGIAFLN-ATITDSP 4901
The following BLAST results are available for this feature:
BLAST of TCONS_00050522-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN12.262e-10145.95Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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