TCONS_00050613-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050613-protein
Unique NameTCONS_00050613-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050613-protein ID=TCONS_00050613-protein|Name=TCONS_00050613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MLERDTEVSICVKYLLFFFNVFFWLLGGFLLGVGLWARVVYAQENESLGL
FGGWHLDPAVLFIIVGVIMFLLGFCGCIGALRENICLLKFFTISLSIIFF
TQLAGGIIGFVFRAKVKELVKTKLHDTIVHYRDNANLQNLIDFSQETFKC
CGLDSYQDWQQNAYFNCTQIGPEACSVPYSCCKTDMLNTQCGYGVNKASM
PASMRFKRIYTDGCVDGITGWFYEHIQVVGGLAVGGAVMQIIVIAFASSM
IADVRRQKAKWETPRNQFNEPLYPLNM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032059XLOC_032059Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050613TCONS_00050613Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR008952Tetraspanin_EC2
IPR018499Tetraspanin/Peripherin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000301TetraspaninPRINTSPR00259TMFOURcoord: 82..110
score: 34.56
coord: 14..37
score: 45.74
coord: 55..81
score: 35.7
coord: 228..254
score: 21.43
IPR000301TetraspaninPIRSFPIRSF002419Tetraspanincoord: 6..270
e-value: 4.4E-55
score: 183.8
IPR008952Tetraspanin, EC2 domainGENE3D1.10.1450.10coord: 110..226
e-value: 1.1E-18
score: 66.8
IPR008952Tetraspanin, EC2 domainSUPERFAMILY48652Tetraspanincoord: 110..225
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 12..249
e-value: 7.7E-62
score: 208.9

Blast
[Close]
BLAST of TCONS_00050613-protein vs. Swiss-Prot (Human)
Match: TSN33 (Tetraspanin-33 OS=Homo sapiens GN=TSPAN33 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.326e-77
Identity = 120/262 (45.80%), Postives = 173/262 (66.03%), Query Frame = 0 
Query:    3 ERDTEVSICVKYLLFFFNVFFWLLGGFLLGVGLWARVVYAQENESLGLFGGWHLDPAVLFIIVGVIMFLLGFCGCIGALRENICLLKFFTISLSIIFFTQLAGGIIGFVFRAKVKELVKTKLHDTIVHYRDNANLQNLIDFSQETFKCCGLDSYQDWQQNAYFNCTQIGP--EACSVPYSCC----KTDMLNTQCGYGVNKAS-MPASMRFKRIYTDGCVDGITGWFYEHIQVVGGLAVGGAVMQIIVIAFASSMIADVRRQ 257
            E  + VS  VKYLLFFFN+ FW++   ++ VG++AR++   E           +DPA+L I+VGV+MFLL FCGCIG+LRENICLL+ F++ L+ +F  QLA GI+GFVF  K +  V   +++ IVHYRD+ +LQNLIDF Q+ F CCG  SY+DW QN YFNC++  P  E CSVPYSCC       ++NT CG G+     + AS   K IYT+GC+D +  W + ++ ++GG+A+G A+ Q++ I  +  ++  ++ Q
Sbjct:   13 EEFSFVSPLVKYLLFFFNMLFWVISMVMVAVGVYARLMKHAE----AALACLAVDPAILLIVVGVLMFLLTFCGCIGSLRENICLLQTFSLCLTAVFLLQLAAGILGFVFSDKARGKVSEIINNAIVHYRDDLDLQNLIDFGQKKFSCCGGISYKDWSQNMYFNCSEDNPSRERCSVPYSCCLPTPDQAVINTMCGQGMQAFDYLEAS---KVIYTNGCIDKLVNWIHSNLFLLGGVALGLAIPQLVGILLSQILVNQIKDQ 267
The following BLAST results are available for this feature:
BLAST of TCONS_00050613-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN331.326e-7745.80Tetraspanin-33 OS=Homo sapiens GN=TSPAN33 PE=1 SV=... [more]
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