TCONS_00050710-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050710-protein
Unique NameTCONS_00050710-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length193

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050710-protein ID=TCONS_00050710-protein|Name=TCONS_00050710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MIKAILVFNNHGKPRLSKFFTHYSEEVQQQIIRESFHLVSRRDDNVCNFL
EGGTALGGADSRLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKC
FENVCELDLIFHVDKVQYILQEIVMGGMVLETNMTEILTHIEAQNKIEKQ
EGGISANTTKALNAVKNMSPNLPNLPKNINLPNISLPNISFNR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032134XLOC_032134Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050710TCONS_00050710Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022775AP_mu_sigma_su
IPR000804Clathrin_sm-chain_CS
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0030117membrane coat
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030117 membrane coat
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.450.60coord: 1..148
e-value: 3.2E-56
score: 188.7
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..147
e-value: 2.7E-51
score: 173.2
IPR000804Clathrin adaptor complex, small chainPROSITEPS00989CLAT_ADAPTOR_Scoord: 63..73
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 1..147

Blast
[Close]
BLAST of TCONS_00050710-protein vs. Swiss-Prot (Human)
Match: AP3S2 (AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 1.368e-106
Identity = 142/192 (73.96%), Postives = 170/192 (88.54%), Query Frame = 0 
Query:    1 MIKAILVFNNHGKPRLSKFFTHYSEEVQQQIIRESFHLVSRRDDNVCNFLEGGTALGGADSRLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVQYILQEIVMGGMVLETNMTEILTHIEAQNKIEKQEGGISANTTKALNAVKNMSPNLPNLPKNINLP--NISLPNIS 190
            MI+AILVFNNHGKPRL +F+  + EE+QQQI+RE+FHLV +RDDN+CNFLEGG+ +GG+D +LIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFH+DKV YILQE+VMGGMVLETNM EI+  IEAQN++EK EGG+SA   +A++AVKN+  NLP +P+NIN+   NI +PN+S
Sbjct:    1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLSAAPARAVSAVKNI--NLPEIPRNINIGDLNIKVPNLS 190
The following BLAST results are available for this feature:
BLAST of TCONS_00050710-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP3S21.368e-10673.96AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP... [more]
back to top