TCONS_00051435-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051435-protein
Unique NameTCONS_00051435-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051435-protein ID=TCONS_00051435-protein|Name=TCONS_00051435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MASALRNCDPELRNYLVDHHVPELFEALMCALTVNQPEDGRQFIIECILQ
LKEDPSMLQELQWDTFIDDDKKPLNHMMKATTMRFSLCYEDERYRPTYDM
LRTAFQFYNQYLLRYYYGGLYAYWQYKKNKRIMLAEKLTSADRYYDLKIC
GRSFKAWLGWKRWEIDRQTTFVNSLTKIVNLSLKRLIFNQWSSISAESRK
TREYFEKIERGELIDPTEINTEKKDHISELPKLLAIRIFMFLELPDLVAC
SKICRSWKEITQANILWSRIDLANSDKGLITGRAIGILLQKCRPFICHLN
MRSCDFLSARTLTMIGDCKNLQDLNLSQCKAVCDDVIKDITVGCPSLLYI
NLSDTEISDASLRHISRNCNGLQYLNIARCVNITNRGLHYLSSGKGSQKL
IYLDMSACDQITREGFRMLAKGCVRLDKLLLNEMHSLTDECIEVG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032589XLOC_032589Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051435TCONS_00051435Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001810F-box_dom
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR003117cAMP_dep_PK_reg_su_I/II_a/b
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 397..422
e-value: 13.0
score: 13.6
coord: 369..394
e-value: 1.0E-4
score: 31.7
coord: 318..343
e-value: 25.0
score: 11.5
coord: 344..368
e-value: 3.5
score: 16.6
IPR001810F-box domainSMARTSM00256fbox_2coord: 230..270
e-value: 1.2E-4
score: 31.4
IPR001810F-box domainPFAMPF12937F-box-likecoord: 227..272
e-value: 2.4E-8
score: 33.6
IPR001810F-box domainPROSITEPS50181FBOXcoord: 224..270
score: 12.306
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 218..274
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 355..444
e-value: 1.1E-9
score: 37.2
coord: 260..354
e-value: 5.5E-8
score: 31.7
NoneNo IPR availableGENE3D1.20.890.10coord: 10..53
e-value: 5.2E-9
score: 35.3
NoneNo IPR availableGENE3D1.20.1280.50coord: 219..259
e-value: 2.5E-12
score: 46.1
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 279..441
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 344..365
e-value: 1.6
score: 8.9
IPR003117cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domainSUPERFAMILY47391Dimerization-anchoring domain of cAMP-dependent PK regulatory subunitcoord: 11..53

Blast
[Close]
BLAST of TCONS_00051435-protein vs. Swiss-Prot (Human)
Match: FXL13 (F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 6.762e-50
Identity = 113/382 (29.58%), Postives = 194/382 (50.79%), Query Frame = 0 
Query:   97 TYDMLRTAFQFYNQYLLRYYYGGLYAYWQ--YKKNKRIMLAEKLTSADRYYDLKICGRSFKAWLGWKRWEIDRQTTFVNSLTKIVNLSLKRLIFNQWSSISAESRKTREYFEKIERGELIDPTEINTEK--------------------------------KDHISELPKLLAIRIFMFLELPDLVACSKICRSWKEITQANILWSRIDLANSDKGLITGRAIGILLQKCRPFICHLNMRSCDFLSARTLTMIGDCKNLQDLNLSQCKAVCDDVIKDITVGCPSLLYINLSDTEISDASLRHISRNCNGLQYLNIARCVNITNRGLHYLSSGKGSQKLIYLDMSACDQITREGFRMLAKGCVRLDKLLLNEMHSLTDECIEV 444
            T +++  A  FY  +L++ ++      W+   + N+ ++LAEK+  A   Y+ ++    F  W  +   + ++    +  + +I+      +I  +W       R T  +  K +  ELI   E+  +K                                K  IS LP+   ++IF +L L D++ C ++  +W  +TQ N LW+ ID + S K +I  + I   LQ+ R  +  LN R C  L  +T   +  C+NLQ+LN+S C    D+ ++ I+ GCP +L +NLS+T I++ ++R + R+ + LQ L++A C   T++GL YL+ G G  KLIYLD+S C QI+ +GFR +A  C  +  L +N+M +LTD C++ 
Sbjct:    2 TPELMIKACSFYTGHLVKTHF----CTWRDIARTNENVVLAEKMNRAVTCYNFRLQKSVFHHWHSYMEDQKEKLKNILLRIQQIIYCHKLTIILTKW-------RNTARHKSKKKEDELILKHELQLKKWKNRLILKRAAAEESNFPERSSSEVFLVDETLKCDISLLPERAILQIFFYLSLKDVIICGQVNHAWMLMTQLNSLWNAIDFS-SVKNVIPDKYIVSTLQRWRLNVLRLNFRGC-LLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDNCVKA 370
The following BLAST results are available for this feature:
BLAST of TCONS_00051435-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FXL136.762e-5029.58F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBX... [more]
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