TCONS_00052348-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052348-protein
Unique NameTCONS_00052348-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length613

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052348-protein ID=TCONS_00052348-protein|Name=TCONS_00052348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=613bp
MPDGKKYELKKTFAGLPRTTRGQPINLKGDPKGKSFTYVNGNSIFIRDVE
DTAECDVYTQHAKETTVATFSPSGFYMASGDVSGKIRIWDLTQKEHLLKY
EYQPISGKIKDIAWTEDSKRLAVCGEGREKYAAAFLWDTGSSVGNLNGPA
KYCNSIDIKQNRPYRLCLASEDYSSYFYEGPPFKTKDWKTDHSNFVNVCR
FSPDGSKYVTAGADGKAFIYDGKTGELIGELNEPSGRIHKGGVYGVAWSA
DSKKLMTCSADKTVKIWNLSERNYISNKEETVFEMGSAVEDMQVGCAWIN
DTLLSVSLSGHINFLDVENPKQPKKVIKGHNKAIIASSFNDDRTLLFTSS
FDGSICCWNVATGDAEIISGDGHKSQVSAIHAKGNTLYTCGIDDTVRYVS
IGEKKYENQCVKLPSQPQAIAAGNLGLVVVACLNEVVVIQDGKITNKYET
GSENYAVAVNADLGKVCVGIDESKVLVYDIKGDSLEQFGSFSTNGRVTDI
KFSGDNQYVAISTAKKQVKVVQTSDFKTEKDNWGFHSVKVNGVSWSPGST
HVASCGTDGHAFVYQLGKSHDPIEMRGAHAQSIDVTSIQFKDDSTLLTTG
RQDCSIRVWNVTL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033097XLOC_033097Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052348TCONS_00052348Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 77..91
score: 30.9
coord: 597..611
score: 29.14
coord: 255..269
score: 39.98
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 441..479
e-value: 280.0
score: 1.5
coord: 224..268
e-value: 5.9E-8
score: 42.4
coord: 181..221
e-value: 7.6E-4
score: 28.8
coord: 95..138
e-value: 8.8
score: 11.0
coord: 526..565
e-value: 0.036
score: 23.2
coord: 363..400
e-value: 19.0
score: 8.9
coord: 139..179
e-value: 42.0
score: 6.7
coord: 484..522
e-value: 2.0
score: 15.0
coord: 569..610
e-value: 0.47
score: 19.0
coord: 51..90
e-value: 8.2E-4
score: 28.7
coord: 320..359
e-value: 6.1E-7
score: 39.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 58..90
e-value: 0.017
score: 15.9
coord: 578..610
e-value: 1.6E-4
score: 22.3
coord: 536..564
e-value: 0.038
score: 14.8
coord: 322..359
e-value: 0.013
score: 16.3
coord: 239..268
e-value: 5.0E-6
score: 27.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 236..277
score: 13.282
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 327..368
score: 12.012
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 189..230
score: 9.807
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 58..99
score: 12.146
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 578..613
score: 11.745
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 15..312
e-value: 1.4E-54
score: 184.7
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 313..502
e-value: 8.5E-26
score: 90.4
NoneNo IPR availableGENE3D2.130.10.120coord: 503..612
e-value: 1.8E-17
score: 63.1
NoneNo IPR availableCDDcd00200WD40coord: 61..397
e-value: 9.71648E-45
score: 160.193
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 255..269
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 597..611
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 58..613
score: 30.268
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 17..278
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 484..611
coord: 188..402

Blast
[Close]
BLAST of TCONS_00052348-protein vs. Swiss-Prot (Human)
Match: WDR1 (WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4)

HSP 1 Score: 529.635 bits (1363), Expect = 0.000e+0
Identity = 279/612 (45.59%), Postives = 388/612 (63.40%), Query Frame = 0 
Query:    7 YELKKTFAGLPRTTRGQPINLKGDPKGKSFTYVNGNSIFIRDVEDTAECDVYTQHAKETTVATFSPSGFYMASGDVSGKIRIWDLTQKEHLLKYEYQPISGKIKDIAWTEDSKRLAVCGEGREKYAAAFLWDTGSSVGNLNGPAKYCNSIDIKQNRPYRLCLASEDYSSYFYEGPPFKTKDWKTDHSNFVNVCRFSPDGSKYVTAGADGKAFIYDGKTGELIGELNEPSGRIHKGGVYGVAWSADSKKLMTCSADKTVKIWNLSERNYISNKEETVFEMGSAVEDMQVGCAWINDTLLSVSLSGHINFLDVENPKQPKKVIKGHNKAI--IASSFNDDRTLLFTSSFDGSICCWNVATGDAEIISGDGHKSQVSAIHA-KGNTLYTCGIDDTVRYVSIGEKKYENQ-CVKLPSQPQAIAAGNLGLVVVACLNEVVVIQDGKITNKYET-GSENYAVAVNADLGKVCVGIDESKVLVYDIKGDSLEQFGS-FSTNGRVTDIKFSGDNQYVAISTAKKQVKVVQTSDFKTEKDNWGFHSVKVNGVSWSPGSTHVASCGTDGHAFVYQLGKSHDPIEMRGAHAQSIDVTSIQFKDDSTLLTTGRQDCSIRVWNVT 612
            YE+KK FA LP+  RG    + GDPKG +F Y NG  + +R++++ A  D+YT+HA +  VA ++PSGFY+ASGDVSGK+RIWD TQKEHLLKYEYQP +GKIKDIAWTEDSKR+AV GEGREK+ A FLWD+GSSVG + G  K  NS+DIKQ+RPYRL   S+D  + F+EGPPFK K    DHS FVN  RFSPDG+++ TA ADG+ +IYDGKTGE +  L     + H GG+Y ++WS DS  L++ S DKT KIW++S  + +S      F MGS V D Q+GC W  D LLSVSLSG+IN+LD  NP +P  VIKGH+K+I  +    N  ++ +++ S DG I  W+  TG+ +  +G GH +QVS +   +   L +C +DDTVRY S+  + Y  Q  VKL  QP+ +A G  G  VV C+ ++V+++D +     +  G E   VAV+     V +G  +  V +Y I G +L+  G      G VTD+ +S D  ++A+  A K V V   +D  +E + +  H  K+  ++WSP + H AS G D   +V+ L      ++++ AH     V+S+ + D+ TL+TT   D S++ W +T
Sbjct:    3 YEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALG--GSKAHDGGIYAISWSPDSTHLLSASGDKTSKIWDVSVNSVVST-----FPMGSTVLDQQLGCLWQKDHLLSVSLSGYINYLDRNNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQGVVKLDVQPKCVAVGPGGYAVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVRLYSILGTTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLH-HVSSLAWLDEHTLVTT-SHDASVKEWTIT 605
The following BLAST results are available for this feature:
BLAST of TCONS_00052348-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR10.000e+045.59WD repeat-containing protein 1 OS=Homo sapiens GN=... [more]
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