TCONS_00052451-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052451-protein
Unique NameTCONS_00052451-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052451-protein ID=TCONS_00052451-protein|Name=TCONS_00052451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
MHKGDTKPSNTASLQQNFEIKKTHSFLSIMSHKKANANSLPRQKTVHSGW
LWKKGLMKSPLANRRWFEIKGDQLYYFKSKGDTTPLGQIPLAGNEVKRIQ
SSDTNNKYSFQLVAGQERKGRPVTENFDTLLFAASTPYELDEWIRAINRV
IYTYCFQPLGGGMFGRSIRETMNIESRRGAGMVPIIVELCVEYIKKHGLH
EEGIFRIPGAQEEVDALKNKFNTGSLKELKDGEYKVHIVASVLKKYLGDL
PQSVIPPDNYDQFIAVGGLFKEDSDEAMKKFSPVLKDIPKAHFDLLKYLC
RFLYELKEYHNETKMTVENLALVFGPNILRPQNEDPAMLLQCLSEANTTT
VALINNQANLFPVTNDECYYDPNRTLLNDHRMNDLIDFDSEQRSATFDYH
KCKSIPTLAVNGELKRSLSESSLHDIVIENERTKSLSGSPSSMEEAASLR
QEMVDMKLDYEEQISDLEKRLGEEKQVQKLLKIRLVDEQKARQALEERLE
LYRAGIEEYCRKFGHVDISIR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033170XLOC_033170Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052451TCONS_00052451Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000198RhoGAP_dom
IPR001849PH_domain
IPR011993PH_dom-like
IPR008936Rho_GTPase_activation_prot
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 450..512
NoneNo IPR availableGENE3D1.10.555.10coord: 157..374
e-value: 3.4E-54
score: 182.9
IPR000198Rho GTPase-activating protein domainSMARTSM00324RhoGAP_3coord: 181..358
e-value: 6.2E-54
score: 195.2
IPR000198Rho GTPase-activating protein domainPFAMPF00620RhoGAPcoord: 184..334
e-value: 6.6E-45
score: 152.5
IPR000198Rho GTPase-activating protein domainPROSITEPS50238RHOGAPcoord: 172..361
score: 39.515
IPR001849Pleckstrin homology domainSMARTSM00233PH_updatecoord: 45..154
e-value: 1.9E-19
score: 80.6
IPR001849Pleckstrin homology domainPFAMPF00169PHcoord: 46..151
e-value: 2.5E-18
score: 66.4
IPR001849Pleckstrin homology domainPROSITEPS50003PH_DOMAINcoord: 44..152
score: 15.867
IPR011993PH domain-likeGENE3D2.30.29.30coord: 34..155
e-value: 5.9E-24
score: 83.6
IPR011993PH domain-likeSUPERFAMILY50729PH domain-likecoord: 24..151
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 163..361

Blast
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BLAST of TCONS_00052451-protein vs. Swiss-Prot (Human)
Match: RHG24 (Rho GTPase-activating protein 24 OS=Homo sapiens GN=ARHGAP24 PE=1 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 1.769e-74
Identity = 129/323 (39.94%), Postives = 200/323 (61.92%), Query Frame = 0 
Query:   42 RQKTVHSGWLWKKG-LMKSPLANRRWFEIKGDQLYYFKSKGDTTPLGQIPLAGNEVKRIQSSDTN-NKYSFQLVAGQERKGRPVTENFDTLLFAASTPYELDEWIRAINRVIYTYCFQPLGGGMFGRSIRETMNIESRRGAGMVPIIVELCVEYIKKHGLHEEGIFRIPGAQEEVDALKNKFNTGSLKELKDGEYKVHIVASVLKKYLGDLPQSVIPPDNYDQFIAVGGLFKEDSDEAMKKFSPVLKDIPKAHFDLLKYLCRFLYELKEYHNETKMTVENLALVFGPNILRPQNEDPAMLLQCLSEANTTTVALINNQANLFP 362
            RQ  +  GWL K+G  +K+   + RWF +KGDQLYYFK + +T PLG I L GN+V     ++ N  K+ F++V G +R    +T N ++ L  AST  ++++W+++I RVI+     P GGG+FG+ + +T+  E R G  + P++VE CV++I++ GL EEG+FR+PG    V  L++ F+ G  K   D    VH VAS+LK YL +LP+ VIP   Y+ F++   L  ++ +  +K+ +  +K +P  +++LLKY+CRFL E++ Y    KM+V+NLA VFGPNILRP+ EDP  +++           +I+    LFP
Sbjct:   17 RQNAIKCGWLRKQGGFVKT--WHTRWFVLKGDQLYYFKDEDETKPLGTIFLPGNKVSEHPCNEENPGKFLFEVVPGGDRDR--MTANHESYLLMASTQNDMEDWVKSIRRVIWG----PFGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGE-KPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMISKHDCLFP 330
The following BLAST results are available for this feature:
BLAST of TCONS_00052451-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHG241.769e-7439.94Rho GTPase-activating protein 24 OS=Homo sapiens G... [more]
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