TCONS_00052810-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052810-protein
Unique NameTCONS_00052810-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length791

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052810-protein ID=TCONS_00052810-protein|Name=TCONS_00052810-protein|organism=Clytia hemisphaerica|type=polypeptide|length=791bp
LFQVNNEDFKLFKNIVHIDASDNQLSLELFKTFPSLENLDLQVNNIKHIK
AKNTDFIQLKRLDLSYNNLSHDAMLNLGRLRNVQELLLRGCSLKSLPPQL
ARGYQVSQSDAEEKRQRAEEKTRFPKLISLDLSENNLTDISTFASLAGLR
RLRILNLSCNKISGVPHLRLMAAHRHFSMSTLAEEGRSNYSLGVRDENTP
HLPISGDGSGRNSKNSKCSCGSDMAGKGTPDNSLKSERLNTGDTPHDEMN
TTIEKNGDNEEVSGMESTREEEQEETGNQGESSEQDAAAGLLDGLEDVIS
AISSNKDVEETNELLNLDFAQELNFRLNSPDAILTTPTTTKRVKASDMVH
VDRVIPGTPSLNDDPNGDDVIIQDPFISDEHSAKDLLGEELKIPFACLTS
LDLSYNHISEEESLLAVTSWPLLHELKLWGNPLTRSSKGIPHVLHHHLKV
MCGINIVRDEPRPIPRQIPVAPVMALTTKAHRVEDKYIPIKRNDMAAIEN
MIQQAIENKSITDGVGGGQGRHENENENVPASSNVVNDEEKGGEGVAKQD
SDDTFFLTQIDEEGVSSHDAEQEILDAPKDYEEEENDHTNKLDDELGLVE
LTDYDSLLELNDEDLADLVIPDSVQGSVAALRHVLRNELVFKSGHHNHKK
KQNNNALVKPNLSPVKNRNEVENALQVIRNANTSHQENLAVVLDKFDDKE
SGIHKKFPDANHMMSRVQKRYDYVRSKSLRPLSETRQKLKECSTRSEPNS
QELVMSRMRKVRIGDFYSPSRGTTPHVKIRGTRFDKVTPNR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033375XLOC_033375Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052810TCONS_00052810Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR025875Leu-rich_rpt_4
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 668..688
NoneNo IPR availableCOILSCoilCoilcoord: 101..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 513..549
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 33..55
e-value: 250.0
score: 1.9
coord: 80..103
e-value: 6.6
score: 14.7
coord: 395..421
e-value: 350.0
score: 0.6
coord: 124..147
e-value: 17.0
score: 11.3
coord: 56..77
e-value: 410.0
score: 0.0
coord: 149..170
e-value: 43.0
score: 8.1
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 2..290
e-value: 3.4E-26
score: 91.1
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 312..764
e-value: 1.0E-5
score: 24.0
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 6..166
coord: 389..439
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 397..409
e-value: 0.54
score: 10.4
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 58..79
score: 6.341
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 35..56
score: 6.565
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 126..147
score: 8.721
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 397..418
score: 7.581
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 151..172
score: 7.928
IPR025875Leucine rich repeat 4PFAMPF12799LRR_4coord: 125..165
e-value: 6.2E-7
score: 29.5

Blast
[Close]
BLAST of TCONS_00052810-protein vs. Swiss-Prot (Human)
Match: XRRA1 (X-ray radiation resistance-associated protein 1 OS=Homo sapiens GN=XRRA1 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 8.154e-31
Identity = 77/163 (47.24%), Postives = 106/163 (65.03%), Query Frame = 0 
Query:    8 DFKLFKNIVHIDASDNQLSLELFKTFPSLENLDLQVNNIKHIKAKNTDFIQLKRLDLSYNNLSHDAMLNLGRLRNVQELLLRGCSLKSLPPQLARGYQ-VSQSDAEEKRQRAEEKTRFPKLISLDLSENNLTDISTFASLAGLRRLRILNLSCNKISGVPHLR 169
            DFK F ++++I+AS+N L LE F TFP+L+ LDL  N IK I  K  DF  L+ LDLS+N+L+ +A+ +LG L +++ LLL G  L SLPP LA   Q  S +    KR       RFP L +L L +N L++ S FASLAGLRRL+ L+L  N+I  +P+L+
Sbjct:  114 DFKHFHSVIYINASENLLPLEAFHTFPALKELDLAFNGIKTIYVKYGDFKLLEFLDLSFNSLTVEAICDLGILPHLRVLLLTGNGLTSLPPNLAVAEQEASVTSLTSKRY----ILRFPALETLMLDDNRLSNPSCFASLAGLRRLKKLSLDENRIIRIPYLQ 272
The following BLAST results are available for this feature:
BLAST of TCONS_00052810-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XRRA18.154e-3147.24X-ray radiation resistance-associated protein 1 OS... [more]
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