TCONS_00053868-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053868-protein
Unique NameTCONS_00053868-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053868-protein ID=TCONS_00053868-protein|Name=TCONS_00053868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MDSSYQSWLNIFLYSFVLIFGIIANSLVVIFFAFKIKRHTTFRWFIVQLA
IADCIVCIITPVLTFYLMSNNGNWYLGPFLCKVITPIGFITVNVSAWILC
AIAYERYRAIGNPLKPRYSRKHVNLICTFMWIGSTIVALPLFLYTDVRGS
QCVPVWNRDQHLVLGIIGLISQSVIPILLMGLTYLAIRNAFKKQELNMNS
TLKGFNDKHKSKSIRLKSKMTTQTLLIAFAVFVLCSLPYNMLYVIAVIMF
RFDVYTTKEKMHQIQIYDQVGFWLSYLVVLNSVMNCLIYAGKFPTFRRFI
LTQICRRRPGNPCQNNNLKEISLTTVKSYALTVINNDNGDLCPFDEVPEK
GERI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033997XLOC_033997Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053868TCONS_00053868Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000276G protein-coupled receptor, rhodopsin-likePRINTSPR00237GPCRRHODOPSNcoord: 88..110
score: 30.65
coord: 221..245
score: 26.26
coord: 165..188
score: 21.44
coord: 271..297
score: 25.67
coord: 42..63
score: 27.26
coord: 122..143
score: 19.93
coord: 9..33
score: 25.49
IPR000276G protein-coupled receptor, rhodopsin-likePFAMPF000017tm_1coord: 25..289
e-value: 7.1E-37
score: 127.0
IPR000276G protein-coupled receptor, rhodopsin-likePROSITEPS00237G_PROTEIN_RECEP_F1_1coord: 94..110
NoneNo IPR availableGENE3D1.20.1070.10coord: 1..333
e-value: 1.1E-53
score: 181.7
NoneNo IPR availableSUPERFAMILY81321Family A G protein-coupled receptor-likecoord: 5..312
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 24..289
score: 35.477

Blast
[Close]
BLAST of TCONS_00053868-protein vs. Swiss-Prot (Human)
Match: NK3R (Neuromedin-K receptor OS=Homo sapiens GN=TACR3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.096e-17
Identity = 70/272 (25.74%), Postives = 124/272 (45.59%), Query Frame = 0 
Query:   25 NSLVVIFFAFKIKR-HTTFRWFIVQLAIADCIVCIITPVLTFYLMSNNGNWYLGPFLCKVITPIGFITVNVSAWILCAIAYERYRAIGNPLKPRYSRKHVNLICTFMWIGSTIVALPLFLYTDVR----GSQCVPVWNR--DQHLVLGIIGLISQSVIPILLMGLTYLAIRNAFKKQELNMNSTLKGFNDKHKSKSIRLKSKMTTQTLLIAFAVFVLCSLPYNMLYVIAVIMFRFDVYTTKEKMHQIQIYDQVGFWLSYLVVLNSVMNCLIY 289
             +L+VI+     KR  T   +F+V LA +D  +     ++ F + + +  WY G   C+         V  S + + AIA +RY AI +PLKPR S     ++   +WI + ++A P  LY+  +     + C   W     QH    II +I     P+L+MG+TY  +       E+    T   ++++ K+K      +   + ++I    F +C LPY++ +++  I      Y    +   IQ      FWL+   + +++ N +IY
Sbjct:  102 GNLIVIWIILAHKRMRTVTNYFLVNLAFSDASMAAFNTLVNF-IYALHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVDRYMAIIDPLKPRLSATATKIVIGSIWILAFLLAFPQCLYSKTKVMPGRTLCFVQWPEGPKQHFTYHIIVIILVYCFPLLIMGITYTIVGITLWGGEIP-GDTCDKYHEQLKAK------RKVVKMMIIVVMTFAICWLPYHIYFILTAI------YQQLNRWKYIQQVYLASFWLA---MSSTMYNPIIY 356
The following BLAST results are available for this feature:
BLAST of TCONS_00053868-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NK3R6.096e-1725.74Neuromedin-K receptor OS=Homo sapiens GN=TACR3 PE=... [more]
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