TCONS_00055011-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00055011-protein
Unique Name	TCONS_00055011-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	491

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00055011-protein ID=TCONS_00055011-protein|Name=TCONS_00055011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp
MASARGDIFVQNDSAFEGKNNKDKMWTACFAAFSAALATVNFGYALGFTA
EAELSEQFNSNNSAIDLSMLNGNSSKGFSMCDPDFDIFASVVALGALVGG
LLAGILIDKIGRKTTIISTTIFYFLGWVLIANSYCYYGKHGGIGDPEFCR
KHSKQWYYSMLYCGRVITGIGVGMSSLVVPVYIAEIASARMRGALGNINQ
LSINFGFVVAYLTGYKQNLPTTAYVPIGISILNLILMVFFLPETPRYLLA
NNRRHDAILALYWLRGQDYPVEEECFEIEGHVNFGTQEQWQWKDLKSSTF
YWPLIIALFLMFFQEFSVDRFGRRKLLLSGSVGMFISLILVSVYVHSYPV
YYNNVDDISNFFSKQENTTYAILAFVCILCFIAMFSIGWGPLPWLLMSEL
FPIKTRGIATTIVTLSNWLFVFTTTSSFCFLVNKXXXXXXSIETWRYTYI
GYFDERLRRICNICVFHTVHFHRNFLLFSGPVWTPKTPLIR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034657	XLOC_034657	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00055011	TCONS_00055011	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003663	Sugar/inositol_transpt
IPR005828	MFS_sugar_transport-like
IPR005829	Sugar_transporter_CS
IPR020846	MFS_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0022891	substrate-specific transmembrane transporter activity
GO:0022857	transmembrane transporter activity
GO:0005215	transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0022891	substrate-specific transmembrane transporter activity
molecular_function	GO:0022857	transmembrane transporter activity
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003663	Sugar/inositol transporter	PRINTS	PR00171	SUGRTRNSPORT	coord: 375..396 score: 35.38 coord: 398..410 score: 39.62 coord: 162..181 score: 39.42 coord: 39..49 score: 32.05
IPR005828	Major facilitator, sugar transporter-like	PFAM	PF00083	Sugar_tr	coord: 32..317 e-value: 4.7E-46 score: 157.5
None	No IPR available	GENE3D	1.20.1250.20		coord: 11..257 e-value: 2.4E-29 score: 101.6
None	No IPR available	GENE3D	1.20.1250.20		coord: 284..453 e-value: 4.2E-16 score: 58.7
IPR005829	Sugar transporter, conserved site	PROSITE	PS00217	SUGAR_TRANSPORT_2	coord: 167..192
IPR005829	Sugar transporter, conserved site	PROSITE	PS00216	SUGAR_TRANSPORT_1	coord: 103..120
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 27..491 score: 20.31
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 87..422 e-value: 6.31554E-17 score: 79.6653
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 283..434 coord: 25..256

Blast

[Close]

BLAST of TCONS_00055011-protein vs. Swiss-Prot (Human)
Match: GTR6 (Solute carrier family 2, facilitated glucose transporter member 6 OS=Homo sapiens GN=SLC2A6 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.116e-41
Identity = 134/484 (27.69%), Postives = 211/484 (43.60%), Query Frame = 0

Query:   12 NDSAFEGKNNKDKMWTACFAAFSAALATVNFGYALGFTAEAELSEQFNSNNSAIDLSMLNGNSSKGFSMCDPDFDI-------FASVVALGALVGGLLAGILIDKIGRKTTIISTTIFYFLGWVLIANSYCYYGKHGGIGDPEFCRKHSKQWYYSMLYCGRVITGIGVGMSSLVVPVYIAEIASARMRGALGNINQLSINFGFVVAYLTGYKQN---LPTTAYVPIGISILNLILMVFFLPETPRYLLANNRRHDAILALYWLRGQDYPVEEECFEIEGHVNFGTQEQWQWKDLKSSTFYWPLIIALFLMFFQE-------------------------------------------FSVDRFGRRKLLLSGSVGMFISLILVSVYVH--SYPVYYNNVDDISNF----FSKQENTTYAILAFVCILC---FIAMFSIGWGPLPWLLMSELFPIKTRGIATTIVTLSNWLFVFTTTSSFCFLVN 433
             D A  G     +++ A FAA    L   +FGYAL +T+             A++ S+            DPD  +       F SV  LGA  GGL A IL D +GRK +I+ + +    G+ L+A      G HG              W   ML  GR +TG   G+++  +PVY++EIA   +RGALG   QL   FG +  Y  G       L      P    +L +IL++ F+P +PR+LL+  R  +A+ AL WLRG D  V  E  +I+ +V      +  W + ++     P+ +AL +   Q+                                            ++D  GR+ LL   +  MF + + + +Y+H    P+  N+   + +      ++        L  V +L    FI  +++GWGP+ WLLMSE+ P++ RG+A+ +  L++WL  F  T SF  +V+
Sbjct:   25 GDRARVGTLQNKRVFLATFAAV---LGNFSFGYALVYTSPV---------IPALERSL------------DPDLHLTKSQASWFGSVFTLGAAAGGLSAMILNDLLGRKLSIMFSAVPSAAGYALMA------GAHG-------------LW---MLLLGRTLTGFAGGLTAACIPVYVSEIAPPGVRGALGATPQLMAVFGSLSLYALGLLLPWRWLAVAGEAP----VLIMILLLSFMPNSPRFLLSRGRDEEALRALAWLRGTDVDVHWEFEQIQDNVR-RQSSRVSWAEARAPHVCRPITVALLMRLLQQLTGITPILVYLQSIFDSTAVLLPPKDDAAIVGAVRLLSVLIAALTMDLAGRKVLLFVSAAIMFAANLTLGLYIHFGPRPLSPNSTAGLESESWGDLAQPLAAPAGYLTLVPLLATMLFIMGYAVGWGPITWLLMSEVLPLRARGVASGLCVLASWLTAFVLTKSFLPVVS 457

The following BLAST results are available for this feature:

BLAST of TCONS_00055011-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00055011-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GTR6	1.116e-41	27.69	Solute carrier family 2, facilitated glucose trans...	[more]

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TCONS_00055011-protein (polypeptide) - C. hemisphaerica