TCONS_00055025-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055025-protein
Unique NameTCONS_00055025-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055025-protein ID=TCONS_00055025-protein|Name=TCONS_00055025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=483bp
MDKAAKLQMQIRENSSELTDFLQDLTKWEENVKKEDEYLRTSKRIDEKLP
PVRKGKKSTDAESIGKSTDTEGDQNNNKNKKSPQVKKEKIKSYDYDAWSK
FDVEAACADVDKEIESESDFEKEEEDEEEMERIEEQRKLQQAAMEKDKGN
QFFKEGKYEAAINRYTTAINIDPNNQIFYANRGMALLKMERFGAAEQDCT
FALQLDPKYTKALLRRATARLKLKKWKMALEDFNNVLEEEPSNKQAVTEI
KNIEKMMKTEQDSQKRTHKEEQTKTKTEKQEKRKKRSTKPLKRIYIQEVG
GSEDESEQPQKTNEKSPVHNKHEEALEKRVPALHESSTLSKPPTSPPKTT
RDDEDVTDVDLVIPTTSFMFETELKRLKDQPDVFYHFLKMIPCAQYTKLF
RQCVDSLISIFLSTLHGYYIRDKLCVHLELENFCKVERFAMATMFLSKND
KKVIVELLNYMESAEYPVKLTEQQIASLRKSYK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034663XLOC_034663Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055025TCONS_00055025Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR025986RPAP3-like_C
IPR011989ARM-like
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 123..150
NoneNo IPR availableGENE3D1.10.150.160coord: 133..189
e-value: 1.4E-14
score: 53.4
NoneNo IPR availablePFAMPF13414TPR_11coord: 149..189
e-value: 1.9E-11
score: 43.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 258..356
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 176..209
e-value: 0.056
score: 22.6
coord: 142..175
e-value: 0.0013
score: 28.0
coord: 210..243
e-value: 1.7E-4
score: 31.0
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 176..209
score: 7.139
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 142..175
score: 11.033
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 210..243
score: 9.086
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 217..248
e-value: 5.7E-9
score: 35.5
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 190..216
e-value: 3.2E-9
score: 36.1
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 140..265
IPR025986RNA-polymerase II-associated protein 3-like, C-terminal domainPFAMPF13877RPAP3_Ccoord: 364..451
e-value: 2.2E-12
score: 47.2
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 249..474
e-value: 3.3E-4
score: 18.6
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 142..243
score: 23.88

Blast
[Close]
BLAST of TCONS_00055025-protein vs. Swiss-Prot (Human)
Match: RPAP3 (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 4.588e-51
Identity = 136/412 (33.01%), Postives = 200/412 (48.54%), Query Frame = 0 
Query:  127 EEEMERIEEQRKLQQAAMEKDKGNQFFKEGKYEAAINRYTTAINIDPNNQIFYANRGMALLKMERFGAAEQDCTFALQLDPKYTKALLRRATARLKLKKWKMALEDFNNVLEEEPSNKQAVTEIKNIEKMMKTEQDSQKRTHKEEQTKTKTEKQEKRK-------KRSTKPLKRIYIQEVGGSEDESEQPQKTNEKSPVHNKHEEALEKRVPALHESSTLSKP--------PTS--PPKTTRDDEDVTDVDLV------------------------------------IPTTSFMFETELKRLKDQPDVFYHFLKMIPCAQYTKLFRQCVD-SLISIFLSTLHGYYIRDK--LCVHLELENFCKVERFAMATMFLSKNDKKVIVELLNYMESAEYPVKLTEQQIASLRKSY 482
            E E ++IE Q+  QQA  EKD+GN FFKEGKYE AI  YT  I  D  N +  ANR MA LK++++  AE+DCT A+ LD  Y+KA  RR TAR  L K   A +DF  VL  EP NKQAVTE+  I+K +       ++ H ++     T++Q   K         STKPLK++ I+E G      + P  T   +P +N    A       +  + T SK         PTS  P       E+V+D   +                                    IP  SF  E++ ++LK  PD+ Y +LK I  + Y KLF++ +D  + +  +  LH +YI  +  L +   L+   +++RF MA MF+S+ +KK+   L N+++ +     L +  +  L+K Y
Sbjct:  267 EGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKELI------EKGHWDDVFLDSTQRQNVVKPIDNPPHPGSTKPLKKVIIEETGNLIQTIDVPDSTTAAAPENNPINLA-----NVIAATGTTSKKNSSQDDLFPTSDTPRAKVLKIEEVSDTSSLQPQASLKQDVCQSYSEKMPIEIEQKPAQFATTVLPPIPANSFQLESDFRQLKSSPDMLYQYLKQIEPSLYPKLFQKNLDPDVFNQIVKILHDFYIEKEKPLLIFEILQRLSELKRFDMAVMFMSETEKKIARALFNHIDKS----GLKDSSVEELKKRY 663

HSP 2 Score: 167.933 bits (424), Expect = 2.418e-45
Identity = 95/263 (36.12%), Postives = 159/263 (60.46%), Query Frame = 0 
Query:    2 DKAAKLQMQIRENSSELTDFLQDLTKWEENVKKEDEYLRTSKRI-DEKLPPVRKGKKSTDAESIGKSTDTEGDQNNNKNKKSPQVKKEKIKSYDYDAWSKFDVEAACADVDKEIESESDFEKEEEDEEEMERIEEQRKLQQAAMEKDKGNQFFKEGKYEAAINRYTTAINIDPNNQIFYANRGMALLKMERFGAAEQDCTFALQLDPKYTKALLRRATARLKLKKWKMALEDFNNVLEEEPSNKQAVTEIKNIEKMMKTEQDS 263
            +KA +LQ+Q+++N+ EL DF++DL  WE+++K++D  LR    + +E LPP+R G      +   K +  +  + N KN+         IKSYDY+AW+K DV+    ++DK+  +     +E E EE+   ++ Q+ L    + K+KGN++FK+GKY+ AI+ YT  ++ DP N +   NR  A  ++++F  AE DC  A+ L+  YTKA  RR  AR  L+K + A +D+  VLE EP+N +A  E++ I + + ++++S
Sbjct:    5 NKAIELQLQVKQNAEELQDFMRDLENWEKDIKQKDMELRRQNGVPEENLPPIRNGNFRKKKKGKAKESSKKTREENTKNR---------IKSYDYEAWAKLDVDRILDELDKDDSTHESLSQESESEEDGIHVDSQKAL----VLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENS 254
The following BLAST results are available for this feature:
BLAST of TCONS_00055025-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPAP34.588e-5133.01RNA polymerase II-associated protein 3 OS=Homo sap... [more]
back to top