TCONS_00055262-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00055262-protein
Unique Name	TCONS_00055262-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	586

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00055262-protein ID=TCONS_00055262-protein|Name=TCONS_00055262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp
MTGANNEHKRRDSPIEYGRPRASSTPKIPKRTLPLDTTPPPQRHTPRNGG
DINIQLNDTTDESLQAKQQLCTPKIQSSFVLCCGFLCFGSSMAIIGPTVL
ELGCLTGQDVGAMSWVFFAQTFSALLGAIFSGVITDRFSINYNIFLSVVM
IIHGAALSILPFMRTLSSLIFVTSIHGLFAGIQDTATNLRMIIMHGQDVP
PYLQTLFFFYGVGAFLSPIIAGNFLNSECNMDQSDGLGDDFAFAKRHVIA
PPNGVSLWVNNIGTSLATNTSTTTLNQITKITTTRIHWAYFVIALLHLIV
TIGLIYLYFAEKKRKQELNLSLGMSRTESSMDDTASKSERSEIDPNIKTQ
VLFISFWIALMVFISDGLQGSFGSYIYTYAIKSGIGIDTDNAAFLNSLFW
GTLALGRLFAIFVSIYVSPRVMLLADVAGCLISIILMFLFRHHVISLWIG
TAFFGLCLSNIFPTSVSMAESYFRLTGTITCFFVVCSGIGEMAIPLLIGK
LFDVIGPISFLSVGCILCFTSVGIYIAVVITGKGISQRLRDIQPTTPDLI
EDDDGTLMEESEDRPKPNGKNNETLNSDDVLHLQEE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034805	XLOC_034805	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00055262	TCONS_00055262	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1250.20		coord: 329..568 e-value: 1.4E-11 score: 43.5
None	No IPR available	GENE3D	1.20.1250.20		coord: 72..320 e-value: 4.2E-14 score: 51.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 546..586
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 286..495 e-value: 1.4E-10 score: 40.5
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 79..529 e-value: 2.61024E-15 score: 75.0429
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 78..225 coord: 286..536

Blast

[Close]

BLAST of TCONS_00055262-protein vs. Swiss-Prot (Human)
Match: MFD4A (Major facilitator superfamily domain-containing protein 4A OS=Homo sapiens GN=MFSD4A PE=2 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 9.875e-56
Identity = 148/515 (28.74%), Postives = 252/515 (48.93%), Query Frame = 0

Query:   85 FLCFGSSMAIIGPTVLELGCLTGQDVGAMSWVFFAQTFSALLGAIFSGVITDRFSIN-YNIFLSVVMIIHGAALSILPFMRTLSSLIFVTSIHGLFAGIQDTATNLRMIIMHGQDVPPYLQTLFFFYGVGAFLSPIIAGNFLNSECNMDQSDGLGDDFA----------FAKRHVIAPPNGVSLWVNNIGTSLATNTSTTTLNQITKITTTRIHWAYFVIALLHLIVTIGLIYLYFAEK-----KRKQELNLSLGMSRTESSMDDTASKSERSEIDPNIKTQV----LF------------ISFWI-----ALMVFISDGLQGSFGSYIYTYAIKSGIGIDTDNAAFLNSLFWGTLALGRLFAIFVSIYVSPRVMLLADVAGCLISIILMFLFRHHVISLWIGTAFFGLCLSNIFPTSVSMAESYFRLTGTITCFFVVCSGIGEMAIPLLIGKLFDVIGPISFLSVGCILCFTSVGIYIAVVITGKGISQRLRDIQPTTPDLIEDDDGTLMEESE 562
            F  FG  +A +GPT+L+L C T   +  +SWVFF+Q    LLG+   GV     + + + +F S + I      +++PF R +  L  V ++ GL  G  DT  N++++ M+ +D   +LQ L FF G GA LSP+IA  FL SE N   ++   +  +            + HV A P     W N     L       T          R+ +A++++AL++L V + ++ L   E+      +++ L LS      E+   +   K + S + P  ++ +    LF             SF+      AL++F++DGL G++ +++Y+YA++  + +    A +L SLFWG + LGRL +I +S  + P  M+  +V G +++ +++ +F ++V+ L++GTA  GL LS+ FP+ ++  E   +  G  T   V  +G+GEM + +L+G +F   G  SFL  G I    +   YI ++            + P  P +   D    ME SE
Sbjct:   25 FFSFGLCIAFLGPTLLDLRCQTHSSLPQISWVFFSQQLCLLLGSALGGVFKRTLAQSLWALFTSSLAI--SLVFAVIPFCRDVKVLASVMALAGLAMGCIDTVANMQLVRMYQKDSAVFLQVLHFFVGFGALLSPLIADPFL-SEANCLPANSTANTTSRGHLFHVSRVLGQHHVDAKP-----WSNQTFPGLTPKDGAGT----------RVSYAFWIMALINLPVPMAVLMLLSKERLLTCCPQRRPLLLSADELALETQPPE---KEDASSLPPKFQSHLGHEDLFSCCQRKNLRGAPYSFFAIHITGALVLFMTDGLTGAYSAFVYSYAVEKPLSVGHKVAGYLPSLFWGFITLGRLLSIPISSRMKPATMVFINVVGVVVTFLVLLIFSYNVVFLFVGTASLGLFLSSTFPSMLAYTEDSLQYKGCATTVLVTGAGVGEMVLQMLVGSIFQAQGSYSFLVCGVIFGCLAFTFYILLLF--------FHRMHPGLPSVPTQDRSIGMENSE 510

The following BLAST results are available for this feature:

BLAST of TCONS_00055262-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00055262-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MFD4A	9.875e-56	28.74	Major facilitator superfamily domain-containing pr...	[more]

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TCONS_00055262-protein (polypeptide) - C. hemisphaerica