Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00056067-protein ID=TCONS_00056067-protein|Name=TCONS_00056067-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp MLQCSRPTPIGSIRRLAVIAIFAYAAFKFYGRENTPDYTSKSHGATSRHL LSAFEWEQCNFEIGHTRNYSNPDSWYSPASAKGWVALYCILILIVFVALA IICDDFFVPSLEAISEKLDLSEDVAGATFMAAGSSAPELFTSIVGVTVES DVGVGTIVGSAIFNLLGIVALSAAFAGQVLHLDWRPLTRDAAFYCFSICF FIIFAWDGKFEIYESVILLALYFLYILLMKFNPKLMEKMAQWGSRKVDPS SDNSNKSDKEDGTETDALSSVLVARDGYGDMAVSNAIGSNVFDIDLGLGF PFLISSLIRNFEPVSILSKEEQVQYDNGEIVMIPHVKFGFILLLVLAMSL IVFGAAKFKLNKYLGLTFVIFYIIFVAYAYIQDLVCNGNC Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term | Definition |
IPR004837 | NaCa_Exmemb |
Vocabulary: Biological Process
Term | Definition |
GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055085 |
transmembrane transport |
cellular_component |
GO:0016021 |
integral component of membrane |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR004837 | Sodium/calcium exchanger membrane region | PFAM | PF01699 | Na_Ca_ex | coord: 266..380 e-value: 2.8E-14 score: 53.3 coord: 90..228 e-value: 2.2E-27 score: 95.8 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 245..265 |
Blast
BLAST of TCONS_00056067-protein vs. Swiss-Prot (Human)
Match: NCKX3 (Sodium/potassium/calcium exchanger 3 OS=Homo sapiens GN=SLC24A3 PE=2 SV=4) HSP 1 Score: 170.244 bits (430), Expect = 3.091e-47 Identity = 91/191 (47.64%), Postives = 129/191 (67.54%), Query Frame = 0 Query: 82 KGWVALYCILILIVFVALAIICDDFFVPSLEAISEKLDLSEDVAGATFMAAGSSAPELFTSIVGVTV-ESDVGVGTIVGSAIFNLLGIVALSAAFAGQVLHLDWRPLTRDAAFYCFSICFFIIFAWDGKFEIYESVILLALYFLYILLMKFNP---KLMEKMAQWGSRKVDPSSDNSNKSDKEDGTETDAL 268
+G V L+ + + +F ALAI+CDDFFVPSLE I E+L LSEDVAGATFMAAGSSAPELFTS++GV + + DVGVGTIVGSA+FN+L I+ + FAGQV+ L L RD+ +Y S+ I+F +D K +ES++L+ +Y +YI++MK+N + E+ + V+ ++N+ D + T L
Sbjct: 107 QGAVVLHVLCAIYMFYALAIVCDDFFVPSLEKICERLHLSEDVAGATFMAAGSSAPELFTSVIGVFITKGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVALSSWCLLRDSIYYTLSVIALIVFIYDEKVSWWESLVLVLMYLIYIVIMKYNACIHQCFERRTKGAGNMVNGLANNAEIDDSSNCDATVVL 297
The following BLAST results are available for this feature:
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